Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt argF and NOLOHH_04095 are separated by 100 nucleotides NOLOHH_04095 and NOLOHH_04100 overlap by 14 nucleotides
NOLOHH_04090: argF - ornithine carbamoyltransferase, at 739,898 to 740,902
argF
NOLOHH_04095: NOLOHH_04095 - DNA-binding protein, at 741,003 to 741,233
_04095
NOLOHH_04100: NOLOHH_04100 - DNA-binding protein, at 741,220 to 742,563
_04100
Position (kb) 741
742 Strain fitness (log2 ratio) -2
-1
0
1
2 at 740.033 kb on - strand, within argF at 740.033 kb on - strand, within argF at 740.099 kb on + strand, within argF at 740.123 kb on + strand, within argF at 740.123 kb on + strand, within argF at 740.123 kb on + strand, within argF at 740.123 kb on + strand, within argF at 740.124 kb on - strand, within argF at 740.124 kb on - strand, within argF at 740.124 kb on - strand, within argF at 740.155 kb on + strand, within argF at 740.155 kb on + strand, within argF at 740.156 kb on - strand, within argF at 740.156 kb on - strand, within argF at 740.198 kb on + strand, within argF at 740.198 kb on + strand, within argF at 740.198 kb on + strand, within argF at 740.198 kb on + strand, within argF at 740.198 kb on + strand, within argF at 740.198 kb on + strand, within argF at 740.198 kb on + strand, within argF at 740.199 kb on - strand, within argF at 740.199 kb on - strand, within argF at 740.199 kb on - strand, within argF at 740.199 kb on - strand, within argF at 740.199 kb on - strand, within argF at 740.256 kb on - strand, within argF at 740.378 kb on + strand, within argF at 740.379 kb on - strand, within argF at 740.395 kb on + strand, within argF at 740.395 kb on + strand, within argF at 740.395 kb on + strand, within argF at 740.395 kb on + strand, within argF at 740.396 kb on - strand, within argF at 740.536 kb on + strand, within argF at 740.553 kb on + strand, within argF at 740.582 kb on - strand, within argF at 740.582 kb on - strand, within argF at 740.585 kb on + strand, within argF at 740.585 kb on + strand, within argF at 740.586 kb on - strand, within argF at 740.587 kb on + strand, within argF at 740.595 kb on + strand, within argF at 740.595 kb on + strand, within argF at 740.595 kb on + strand, within argF at 740.595 kb on + strand, within argF at 740.595 kb on + strand, within argF at 740.596 kb on - strand, within argF at 740.596 kb on - strand, within argF at 740.596 kb on - strand, within argF at 740.596 kb on - strand, within argF at 740.596 kb on - strand, within argF at 740.646 kb on + strand, within argF at 740.781 kb on + strand, within argF at 740.781 kb on + strand, within argF at 740.782 kb on - strand, within argF at 740.863 kb on + strand at 740.897 kb on - strand at 741.007 kb on - strand at 741.151 kb on - strand, within NOLOHH_04095 at 741.163 kb on + strand, within NOLOHH_04095 at 741.205 kb on + strand, within NOLOHH_04095 at 741.323 kb on - strand at 741.349 kb on + strand at 741.539 kb on + strand, within NOLOHH_04100 at 742.158 kb on + strand, within NOLOHH_04100 at 742.158 kb on + strand, within NOLOHH_04100
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 740,033 - argF NOLOHH_04090 0.13 -0.5 740,033 - argF NOLOHH_04090 0.13 +1.5 740,099 + argF NOLOHH_04090 0.20 +1.8 740,123 + argF NOLOHH_04090 0.22 -0.5 740,123 + argF NOLOHH_04090 0.22 +0.8 740,123 + argF NOLOHH_04090 0.22 -1.4 740,123 + argF NOLOHH_04090 0.22 -1.0 740,124 - argF NOLOHH_04090 0.22 -1.0 740,124 - argF NOLOHH_04090 0.22 -0.7 740,124 - argF NOLOHH_04090 0.22 -1.5 740,155 + argF NOLOHH_04090 0.26 -0.6 740,155 + argF NOLOHH_04090 0.26 +1.5 740,156 - argF NOLOHH_04090 0.26 +1.2 740,156 - argF NOLOHH_04090 0.26 -0.2 740,198 + argF NOLOHH_04090 0.30 -0.4 740,198 + argF NOLOHH_04090 0.30 +1.0 740,198 + argF NOLOHH_04090 0.30 +0.5 740,198 + argF NOLOHH_04090 0.30 -1.8 740,198 + argF NOLOHH_04090 0.30 -0.3 740,198 + argF NOLOHH_04090 0.30 +0.9 740,198 + argF NOLOHH_04090 0.30 -1.3 740,199 - argF NOLOHH_04090 0.30 -0.0 740,199 - argF NOLOHH_04090 0.30 +0.8 740,199 - argF NOLOHH_04090 0.30 -0.5 740,199 - argF NOLOHH_04090 0.30 +1.3 740,199 - argF NOLOHH_04090 0.30 -0.4 740,256 - argF NOLOHH_04090 0.36 -1.5 740,378 + argF NOLOHH_04090 0.48 +0.1 740,379 - argF NOLOHH_04090 0.48 +1.1 740,395 + argF NOLOHH_04090 0.49 +0.2 740,395 + argF NOLOHH_04090 0.49 -0.1 740,395 + argF NOLOHH_04090 0.49 -0.1 740,395 + argF NOLOHH_04090 0.49 -1.1 740,396 - argF NOLOHH_04090 0.50 -1.5 740,536 + argF NOLOHH_04090 0.63 +1.2 740,553 + argF NOLOHH_04090 0.65 +1.8 740,582 - argF NOLOHH_04090 0.68 +0.1 740,582 - argF NOLOHH_04090 0.68 -2.5 740,585 + argF NOLOHH_04090 0.68 +0.1 740,585 + argF NOLOHH_04090 0.68 -0.2 740,586 - argF NOLOHH_04090 0.68 +0.9 740,587 + argF NOLOHH_04090 0.69 +0.0 740,595 + argF NOLOHH_04090 0.69 -0.5 740,595 + argF NOLOHH_04090 0.69 -0.5 740,595 + argF NOLOHH_04090 0.69 +0.0 740,595 + argF NOLOHH_04090 0.69 +0.8 740,595 + argF NOLOHH_04090 0.69 +1.5 740,596 - argF NOLOHH_04090 0.69 +2.1 740,596 - argF NOLOHH_04090 0.69 -0.2 740,596 - argF NOLOHH_04090 0.69 +2.1 740,596 - argF NOLOHH_04090 0.69 +0.2 740,596 - argF NOLOHH_04090 0.69 +0.5 740,646 + argF NOLOHH_04090 0.74 +0.0 740,781 + argF NOLOHH_04090 0.88 +0.1 740,781 + argF NOLOHH_04090 0.88 -0.9 740,782 - argF NOLOHH_04090 0.88 -1.8 740,863 + +0.5 740,897 - +0.2 741,007 - -0.2 741,151 - NOLOHH_04095 0.64 -0.3 741,163 + NOLOHH_04095 0.69 -0.3 741,205 + NOLOHH_04095 0.87 -1.3 741,323 - +0.1 741,349 + +1.1 741,539 + NOLOHH_04100 0.24 -1.1 742,158 + NOLOHH_04100 0.70 +0.3 742,158 + NOLOHH_04100 0.70 +0.7
Or see this region's nucleotide sequence