Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nanM and nanS are separated by 64 nucleotides nanS and NOLOHH_03960 are separated by 211 nucleotides NOLOHH_03960 and NOLOHH_03965 overlap by 21 nucleotides
NOLOHH_03950: nanM - N-acetylneuraminate epimerase, at 710,684 to 711,790
nanM
NOLOHH_03955: nanS - putative 9-O-acetyl-N-acetylneuraminic acid deacetylase, at 711,855 to 712,835
nanS
NOLOHH_03960: NOLOHH_03960 - HNHc domain-containing protein, at 713,047 to 713,679
_03960
NOLOHH_03965: NOLOHH_03965 - Integrase catalytic domain-containing protein, at 713,659 to 713,979
_03965
Position (kb) 711
712
713 Strain fitness (log2 ratio) -2
-1
0
1
2 at 710.929 kb on + strand, within nanM at 711.011 kb on + strand, within nanM at 711.012 kb on - strand, within nanM at 711.012 kb on - strand, within nanM at 711.029 kb on - strand, within nanM at 711.037 kb on + strand, within nanM at 711.104 kb on + strand, within nanM at 711.104 kb on + strand, within nanM at 711.185 kb on - strand, within nanM at 711.185 kb on - strand, within nanM at 711.185 kb on - strand, within nanM at 711.305 kb on + strand, within nanM at 711.356 kb on - strand, within nanM at 711.507 kb on + strand, within nanM at 711.508 kb on - strand, within nanM at 711.595 kb on + strand, within nanM at 711.688 kb on + strand at 711.788 kb on + strand at 711.829 kb on + strand at 711.880 kb on - strand at 711.883 kb on - strand at 711.885 kb on + strand at 711.885 kb on + strand at 711.886 kb on - strand at 711.886 kb on - strand at 711.917 kb on + strand at 712.001 kb on + strand, within nanS at 712.149 kb on - strand, within nanS at 712.149 kb on - strand, within nanS at 712.163 kb on - strand, within nanS at 712.163 kb on - strand, within nanS at 712.172 kb on + strand, within nanS at 712.172 kb on + strand, within nanS at 712.251 kb on + strand, within nanS at 712.251 kb on + strand, within nanS at 712.252 kb on - strand, within nanS at 712.322 kb on - strand, within nanS at 712.378 kb on + strand, within nanS at 712.405 kb on + strand, within nanS at 712.442 kb on + strand, within nanS at 712.443 kb on - strand, within nanS at 712.443 kb on - strand, within nanS at 712.449 kb on - strand, within nanS at 712.500 kb on - strand, within nanS at 712.502 kb on + strand, within nanS at 712.503 kb on - strand, within nanS at 712.570 kb on - strand, within nanS at 712.578 kb on - strand, within nanS at 712.578 kb on - strand, within nanS at 712.582 kb on - strand, within nanS at 712.598 kb on + strand, within nanS at 712.607 kb on - strand, within nanS at 712.616 kb on + strand, within nanS at 712.688 kb on - strand, within nanS at 712.702 kb on - strand, within nanS at 712.702 kb on - strand, within nanS at 712.801 kb on + strand at 712.802 kb on - strand at 712.802 kb on - strand at 712.802 kb on - strand at 712.844 kb on + strand at 712.854 kb on + strand at 712.929 kb on + strand at 712.930 kb on - strand at 712.968 kb on + strand at 712.969 kb on - strand at 712.971 kb on + strand at 713.144 kb on - strand, within NOLOHH_03960 at 713.147 kb on + strand, within NOLOHH_03960 at 713.189 kb on - strand, within NOLOHH_03960 at 713.203 kb on + strand, within NOLOHH_03960 at 713.283 kb on - strand, within NOLOHH_03960 at 713.283 kb on - strand, within NOLOHH_03960 at 713.306 kb on + strand, within NOLOHH_03960 at 713.306 kb on + strand, within NOLOHH_03960 at 713.307 kb on - strand, within NOLOHH_03960 at 713.307 kb on - strand, within NOLOHH_03960 at 713.307 kb on - strand, within NOLOHH_03960 at 713.307 kb on - strand, within NOLOHH_03960 at 713.375 kb on - strand, within NOLOHH_03960 at 713.459 kb on + strand, within NOLOHH_03960 at 713.484 kb on + strand, within NOLOHH_03960 at 713.484 kb on + strand, within NOLOHH_03960 at 713.485 kb on - strand, within NOLOHH_03960 at 713.579 kb on - strand, within NOLOHH_03960 at 713.579 kb on - strand, within NOLOHH_03960 at 713.580 kb on + strand, within NOLOHH_03960 at 713.580 kb on + strand, within NOLOHH_03960 at 713.581 kb on - strand, within NOLOHH_03960 at 713.581 kb on - strand, within NOLOHH_03960 at 713.608 kb on + strand, within NOLOHH_03960 at 713.610 kb on + strand, within NOLOHH_03960 at 713.610 kb on + strand, within NOLOHH_03960 at 713.645 kb on + strand at 713.725 kb on - strand, within NOLOHH_03965 at 713.800 kb on + strand, within NOLOHH_03965
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 710,929 + nanM NOLOHH_03950 0.22 +0.8 711,011 + nanM NOLOHH_03950 0.30 -0.2 711,012 - nanM NOLOHH_03950 0.30 +2.1 711,012 - nanM NOLOHH_03950 0.30 -0.6 711,029 - nanM NOLOHH_03950 0.31 +0.2 711,037 + nanM NOLOHH_03950 0.32 -2.7 711,104 + nanM NOLOHH_03950 0.38 +1.5 711,104 + nanM NOLOHH_03950 0.38 -0.6 711,185 - nanM NOLOHH_03950 0.45 -0.2 711,185 - nanM NOLOHH_03950 0.45 +0.5 711,185 - nanM NOLOHH_03950 0.45 -0.8 711,305 + nanM NOLOHH_03950 0.56 -0.5 711,356 - nanM NOLOHH_03950 0.61 +0.5 711,507 + nanM NOLOHH_03950 0.74 +0.1 711,508 - nanM NOLOHH_03950 0.74 -0.5 711,595 + nanM NOLOHH_03950 0.82 -1.1 711,688 + +1.1 711,788 + -0.0 711,829 + -0.7 711,880 - +0.2 711,883 - +0.5 711,885 + -0.7 711,885 + +1.1 711,886 - -0.1 711,886 - -0.5 711,917 + -0.4 712,001 + nanS NOLOHH_03955 0.15 +0.7 712,149 - nanS NOLOHH_03955 0.30 +0.2 712,149 - nanS NOLOHH_03955 0.30 -1.1 712,163 - nanS NOLOHH_03955 0.31 +0.8 712,163 - nanS NOLOHH_03955 0.31 -2.1 712,172 + nanS NOLOHH_03955 0.32 +1.8 712,172 + nanS NOLOHH_03955 0.32 +0.9 712,251 + nanS NOLOHH_03955 0.40 +0.3 712,251 + nanS NOLOHH_03955 0.40 -1.8 712,252 - nanS NOLOHH_03955 0.40 +0.2 712,322 - nanS NOLOHH_03955 0.48 +1.1 712,378 + nanS NOLOHH_03955 0.53 +1.1 712,405 + nanS NOLOHH_03955 0.56 +0.5 712,442 + nanS NOLOHH_03955 0.60 -1.1 712,443 - nanS NOLOHH_03955 0.60 -0.5 712,443 - nanS NOLOHH_03955 0.60 +0.5 712,449 - nanS NOLOHH_03955 0.61 +1.1 712,500 - nanS NOLOHH_03955 0.66 +1.7 712,502 + nanS NOLOHH_03955 0.66 -1.1 712,503 - nanS NOLOHH_03955 0.66 -0.1 712,570 - nanS NOLOHH_03955 0.73 -1.1 712,578 - nanS NOLOHH_03955 0.74 +1.1 712,578 - nanS NOLOHH_03955 0.74 +0.5 712,582 - nanS NOLOHH_03955 0.74 +0.5 712,598 + nanS NOLOHH_03955 0.76 +0.8 712,607 - nanS NOLOHH_03955 0.77 -2.3 712,616 + nanS NOLOHH_03955 0.78 -0.1 712,688 - nanS NOLOHH_03955 0.85 -1.3 712,702 - nanS NOLOHH_03955 0.86 -0.1 712,702 - nanS NOLOHH_03955 0.86 -0.7 712,801 + +1.2 712,802 - +1.2 712,802 - +0.7 712,802 - -2.7 712,844 + +2.6 712,854 + +0.4 712,929 + +0.0 712,930 - +0.5 712,968 + -1.1 712,969 - +1.0 712,971 + +0.3 713,144 - NOLOHH_03960 0.15 -0.6 713,147 + NOLOHH_03960 0.16 +1.2 713,189 - NOLOHH_03960 0.22 +0.4 713,203 + NOLOHH_03960 0.25 -0.1 713,283 - NOLOHH_03960 0.37 +0.7 713,283 - NOLOHH_03960 0.37 -0.1 713,306 + NOLOHH_03960 0.41 -0.1 713,306 + NOLOHH_03960 0.41 +1.2 713,307 - NOLOHH_03960 0.41 -0.5 713,307 - NOLOHH_03960 0.41 +2.5 713,307 - NOLOHH_03960 0.41 +0.5 713,307 - NOLOHH_03960 0.41 -0.0 713,375 - NOLOHH_03960 0.52 +0.2 713,459 + NOLOHH_03960 0.65 +0.2 713,484 + NOLOHH_03960 0.69 +0.7 713,484 + NOLOHH_03960 0.69 -0.1 713,485 - NOLOHH_03960 0.69 -0.1 713,579 - NOLOHH_03960 0.84 +0.0 713,579 - NOLOHH_03960 0.84 -0.5 713,580 + NOLOHH_03960 0.84 -0.7 713,580 + NOLOHH_03960 0.84 -1.0 713,581 - NOLOHH_03960 0.84 +0.5 713,581 - NOLOHH_03960 0.84 -0.0 713,608 + NOLOHH_03960 0.89 -0.8 713,610 + NOLOHH_03960 0.89 -0.1 713,610 + NOLOHH_03960 0.89 -0.7 713,645 + +0.5 713,725 - NOLOHH_03965 0.21 +1.5 713,800 + NOLOHH_03965 0.44 +0.8
Or see this region's nucleotide sequence