Strain Fitness in Escherichia coli ECOR27 around NOLOHH_03950

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnanC and nanM are separated by 19 nucleotidesnanM and nanS are separated by 64 nucleotides NOLOHH_03945: nanC - N-acetylneuraminic acid outer membrane channel NanC, at 709,948 to 710,664 nanC NOLOHH_03950: nanM - N-acetylneuraminate epimerase, at 710,684 to 711,790 nanM NOLOHH_03955: nanS - putative 9-O-acetyl-N-acetylneuraminic acid deacetylase, at 711,855 to 712,835 nanS Position (kb) 710 711 712Strain fitness (log2 ratio) -2 -1 0 1 2at 709.720 kb on + strandat 709.855 kb on - strandat 709.980 kb on - strandat 710.062 kb on + strand, within nanCat 710.197 kb on + strand, within nanCat 710.285 kb on + strand, within nanCat 710.286 kb on - strand, within nanCat 710.286 kb on - strand, within nanCat 710.414 kb on - strand, within nanCat 710.422 kb on + strand, within nanCat 710.423 kb on - strand, within nanCat 710.423 kb on - strand, within nanCat 710.427 kb on + strand, within nanCat 710.430 kb on + strand, within nanCat 710.431 kb on - strand, within nanCat 710.434 kb on - strand, within nanCat 710.467 kb on + strand, within nanCat 710.545 kb on - strand, within nanCat 710.570 kb on + strand, within nanCat 710.571 kb on - strand, within nanCat 710.576 kb on - strand, within nanCat 710.616 kb on + strandat 710.617 kb on - strandat 710.770 kb on + strandat 710.807 kb on + strand, within nanMat 710.807 kb on + strand, within nanMat 710.808 kb on - strand, within nanMat 710.840 kb on + strand, within nanMat 710.929 kb on + strand, within nanMat 711.011 kb on + strand, within nanMat 711.012 kb on - strand, within nanMat 711.012 kb on - strand, within nanMat 711.029 kb on - strand, within nanMat 711.037 kb on + strand, within nanMat 711.104 kb on + strand, within nanMat 711.104 kb on + strand, within nanMat 711.185 kb on - strand, within nanMat 711.185 kb on - strand, within nanMat 711.185 kb on - strand, within nanMat 711.305 kb on + strand, within nanMat 711.356 kb on - strand, within nanMat 711.507 kb on + strand, within nanMat 711.508 kb on - strand, within nanMat 711.595 kb on + strand, within nanMat 711.688 kb on + strandat 711.788 kb on + strandat 711.829 kb on + strandat 711.880 kb on - strandat 711.883 kb on - strandat 711.885 kb on + strandat 711.885 kb on + strandat 711.886 kb on - strandat 711.886 kb on - strandat 711.917 kb on + strandat 712.001 kb on + strand, within nanSat 712.149 kb on - strand, within nanSat 712.149 kb on - strand, within nanSat 712.163 kb on - strand, within nanSat 712.163 kb on - strand, within nanSat 712.172 kb on + strand, within nanSat 712.172 kb on + strand, within nanSat 712.251 kb on + strand, within nanSat 712.251 kb on + strand, within nanSat 712.252 kb on - strand, within nanSat 712.322 kb on - strand, within nanSat 712.378 kb on + strand, within nanSat 712.405 kb on + strand, within nanSat 712.442 kb on + strand, within nanSat 712.443 kb on - strand, within nanSat 712.443 kb on - strand, within nanSat 712.449 kb on - strand, within nanSat 712.500 kb on - strand, within nanSat 712.502 kb on + strand, within nanSat 712.503 kb on - strand, within nanSat 712.570 kb on - strand, within nanSat 712.578 kb on - strand, within nanSat 712.578 kb on - strand, within nanSat 712.582 kb on - strand, within nanSat 712.598 kb on + strand, within nanSat 712.607 kb on - strand, within nanSat 712.616 kb on + strand, within nanSat 712.688 kb on - strand, within nanSat 712.702 kb on - strand, within nanSat 712.702 kb on - strand, within nanS

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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709,720 + -0.5
709,855 - -0.1
709,980 - -0.2
710,062 + nanC NOLOHH_03945 0.16 +0.4
710,197 + nanC NOLOHH_03945 0.35 -0.4
710,285 + nanC NOLOHH_03945 0.47 -1.1
710,286 - nanC NOLOHH_03945 0.47 -0.1
710,286 - nanC NOLOHH_03945 0.47 -0.1
710,414 - nanC NOLOHH_03945 0.65 -1.2
710,422 + nanC NOLOHH_03945 0.66 -0.2
710,423 - nanC NOLOHH_03945 0.66 +1.2
710,423 - nanC NOLOHH_03945 0.66 +1.6
710,427 + nanC NOLOHH_03945 0.67 +0.8
710,430 + nanC NOLOHH_03945 0.67 +0.6
710,431 - nanC NOLOHH_03945 0.67 -0.1
710,434 - nanC NOLOHH_03945 0.68 -0.7
710,467 + nanC NOLOHH_03945 0.72 +0.2
710,545 - nanC NOLOHH_03945 0.83 +0.5
710,570 + nanC NOLOHH_03945 0.87 +0.3
710,571 - nanC NOLOHH_03945 0.87 -0.7
710,576 - nanC NOLOHH_03945 0.88 +0.9
710,616 + +0.2
710,617 - +0.5
710,770 + -1.4
710,807 + nanM NOLOHH_03950 0.11 +0.1
710,807 + nanM NOLOHH_03950 0.11 +1.3
710,808 - nanM NOLOHH_03950 0.11 +1.2
710,840 + nanM NOLOHH_03950 0.14 -0.8
710,929 + nanM NOLOHH_03950 0.22 +0.8
711,011 + nanM NOLOHH_03950 0.30 -0.2
711,012 - nanM NOLOHH_03950 0.30 +2.1
711,012 - nanM NOLOHH_03950 0.30 -0.6
711,029 - nanM NOLOHH_03950 0.31 +0.2
711,037 + nanM NOLOHH_03950 0.32 -2.7
711,104 + nanM NOLOHH_03950 0.38 +1.5
711,104 + nanM NOLOHH_03950 0.38 -0.6
711,185 - nanM NOLOHH_03950 0.45 -0.2
711,185 - nanM NOLOHH_03950 0.45 +0.5
711,185 - nanM NOLOHH_03950 0.45 -0.8
711,305 + nanM NOLOHH_03950 0.56 -0.5
711,356 - nanM NOLOHH_03950 0.61 +0.5
711,507 + nanM NOLOHH_03950 0.74 +0.1
711,508 - nanM NOLOHH_03950 0.74 -0.5
711,595 + nanM NOLOHH_03950 0.82 -1.1
711,688 + +1.1
711,788 + -0.0
711,829 + -0.7
711,880 - +0.2
711,883 - +0.5
711,885 + -0.7
711,885 + +1.1
711,886 - -0.1
711,886 - -0.5
711,917 + -0.4
712,001 + nanS NOLOHH_03955 0.15 +0.7
712,149 - nanS NOLOHH_03955 0.30 +0.2
712,149 - nanS NOLOHH_03955 0.30 -1.1
712,163 - nanS NOLOHH_03955 0.31 +0.8
712,163 - nanS NOLOHH_03955 0.31 -2.1
712,172 + nanS NOLOHH_03955 0.32 +1.8
712,172 + nanS NOLOHH_03955 0.32 +0.9
712,251 + nanS NOLOHH_03955 0.40 +0.3
712,251 + nanS NOLOHH_03955 0.40 -1.8
712,252 - nanS NOLOHH_03955 0.40 +0.2
712,322 - nanS NOLOHH_03955 0.48 +1.1
712,378 + nanS NOLOHH_03955 0.53 +1.1
712,405 + nanS NOLOHH_03955 0.56 +0.5
712,442 + nanS NOLOHH_03955 0.60 -1.1
712,443 - nanS NOLOHH_03955 0.60 -0.5
712,443 - nanS NOLOHH_03955 0.60 +0.5
712,449 - nanS NOLOHH_03955 0.61 +1.1
712,500 - nanS NOLOHH_03955 0.66 +1.7
712,502 + nanS NOLOHH_03955 0.66 -1.1
712,503 - nanS NOLOHH_03955 0.66 -0.1
712,570 - nanS NOLOHH_03955 0.73 -1.1
712,578 - nanS NOLOHH_03955 0.74 +1.1
712,578 - nanS NOLOHH_03955 0.74 +0.5
712,582 - nanS NOLOHH_03955 0.74 +0.5
712,598 + nanS NOLOHH_03955 0.76 +0.8
712,607 - nanS NOLOHH_03955 0.77 -2.3
712,616 + nanS NOLOHH_03955 0.78 -0.1
712,688 - nanS NOLOHH_03955 0.85 -1.3
712,702 - nanS NOLOHH_03955 0.86 -0.1
712,702 - nanS NOLOHH_03955 0.86 -0.7

Or see this region's nucleotide sequence