Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fhuF and bglJ are separated by 37 nucleotides bglJ and yjjQ overlap by 43 nucleotides yjjQ and yjjP are separated by 618 nucleotides
NOLOHH_03645: fhuF - siderophore-iron reductase FhuF, at 645,473 to 646,261
fhuF
NOLOHH_03650: bglJ - DNA-binding transcriptional activator BglJ, at 646,299 to 646,976
bglJ
NOLOHH_03655: yjjQ - Putative transcription factor YjjQ, at 646,934 to 647,659
yjjQ
NOLOHH_03660: yjjP - putative succinate transporter subunit YjjP, at 648,278 to 649,048
yjjP
Position (kb) 646
647
648 Strain fitness (log2 ratio) -2
-1
0
1
2 at 645.987 kb on + strand, within fhuF at 645.988 kb on - strand, within fhuF at 645.988 kb on - strand, within fhuF at 646.027 kb on + strand, within fhuF at 646.027 kb on + strand, within fhuF at 646.028 kb on - strand, within fhuF at 646.028 kb on - strand, within fhuF at 646.037 kb on + strand, within fhuF at 646.052 kb on + strand, within fhuF at 646.052 kb on + strand, within fhuF at 646.053 kb on - strand, within fhuF at 646.057 kb on + strand, within fhuF at 646.057 kb on + strand, within fhuF at 646.058 kb on - strand, within fhuF at 646.136 kb on - strand, within fhuF at 646.136 kb on - strand, within fhuF at 646.147 kb on + strand, within fhuF at 646.147 kb on + strand, within fhuF at 646.250 kb on - strand at 646.250 kb on - strand at 646.290 kb on + strand at 646.304 kb on - strand at 646.319 kb on + strand at 646.320 kb on - strand at 646.340 kb on + strand at 646.341 kb on - strand at 646.341 kb on - strand at 646.341 kb on - strand at 646.341 kb on - strand at 646.341 kb on - strand at 646.345 kb on - strand at 646.345 kb on - strand at 646.345 kb on - strand at 646.415 kb on + strand, within bglJ at 646.416 kb on - strand, within bglJ at 646.416 kb on - strand, within bglJ at 646.437 kb on - strand, within bglJ at 646.474 kb on + strand, within bglJ at 646.487 kb on + strand, within bglJ at 646.487 kb on + strand, within bglJ at 646.487 kb on + strand, within bglJ at 646.497 kb on + strand, within bglJ at 646.498 kb on - strand, within bglJ at 646.498 kb on - strand, within bglJ at 646.540 kb on + strand, within bglJ at 646.540 kb on + strand, within bglJ at 646.540 kb on + strand, within bglJ at 646.575 kb on + strand, within bglJ at 646.575 kb on + strand, within bglJ at 646.575 kb on + strand, within bglJ at 646.585 kb on - strand, within bglJ at 646.635 kb on + strand, within bglJ at 646.636 kb on - strand, within bglJ at 646.636 kb on - strand, within bglJ at 646.689 kb on - strand, within bglJ at 646.708 kb on - strand, within bglJ at 646.708 kb on - strand, within bglJ at 646.755 kb on + strand, within bglJ at 646.756 kb on - strand, within bglJ at 646.756 kb on - strand, within bglJ at 646.856 kb on - strand, within bglJ at 646.856 kb on - strand, within bglJ at 646.856 kb on - strand, within bglJ at 646.856 kb on - strand, within bglJ at 646.860 kb on - strand, within bglJ at 646.860 kb on - strand, within bglJ at 646.868 kb on + strand, within bglJ at 646.869 kb on - strand, within bglJ at 646.869 kb on - strand, within bglJ at 646.958 kb on + strand at 646.959 kb on - strand at 647.009 kb on - strand, within yjjQ at 647.009 kb on - strand, within yjjQ at 647.036 kb on + strand, within yjjQ at 647.037 kb on - strand, within yjjQ at 647.044 kb on + strand, within yjjQ at 647.047 kb on - strand, within yjjQ at 647.047 kb on - strand, within yjjQ at 647.047 kb on - strand, within yjjQ at 647.116 kb on + strand, within yjjQ at 647.166 kb on - strand, within yjjQ at 647.166 kb on - strand, within yjjQ at 647.169 kb on - strand, within yjjQ at 647.178 kb on - strand, within yjjQ at 647.219 kb on - strand, within yjjQ at 647.267 kb on - strand, within yjjQ at 647.294 kb on + strand, within yjjQ at 647.295 kb on - strand, within yjjQ at 647.337 kb on - strand, within yjjQ at 647.514 kb on - strand, within yjjQ at 647.520 kb on - strand, within yjjQ at 647.875 kb on - strand at 648.045 kb on - strand at 648.104 kb on + strand at 648.104 kb on + strand at 648.105 kb on - strand at 648.105 kb on - strand at 648.125 kb on + strand at 648.168 kb on - strand at 648.220 kb on - strand at 648.248 kb on - strand at 648.248 kb on - strand at 648.260 kb on + strand at 648.317 kb on - strand at 648.457 kb on + strand, within yjjP at 648.457 kb on + strand, within yjjP at 648.508 kb on + strand, within yjjP at 648.509 kb on - strand, within yjjP at 648.509 kb on - strand, within yjjP at 648.511 kb on + strand, within yjjP at 648.511 kb on + strand, within yjjP at 648.511 kb on + strand, within yjjP at 648.511 kb on + strand, within yjjP at 648.511 kb on + strand, within yjjP at 648.512 kb on - strand, within yjjP at 648.512 kb on - strand, within yjjP at 648.512 kb on - strand, within yjjP at 648.512 kb on - strand, within yjjP at 648.512 kb on - strand, within yjjP at 648.512 kb on - strand, within yjjP at 648.512 kb on - strand, within yjjP at 648.512 kb on - strand, within yjjP at 648.573 kb on - strand, within yjjP at 648.612 kb on + strand, within yjjP at 648.612 kb on + strand, within yjjP at 648.612 kb on + strand, within yjjP at 648.613 kb on - strand, within yjjP at 648.613 kb on - strand, within yjjP at 648.613 kb on - strand, within yjjP at 648.613 kb on - strand, within yjjP at 648.613 kb on - strand, within yjjP at 648.634 kb on - strand, within yjjP at 648.634 kb on - strand, within yjjP at 648.634 kb on - strand, within yjjP
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 645,987 + fhuF NOLOHH_03645 0.65 +0.3 645,988 - fhuF NOLOHH_03645 0.65 -0.8 645,988 - fhuF NOLOHH_03645 0.65 +0.8 646,027 + fhuF NOLOHH_03645 0.70 -0.3 646,027 + fhuF NOLOHH_03645 0.70 -0.0 646,028 - fhuF NOLOHH_03645 0.70 +0.8 646,028 - fhuF NOLOHH_03645 0.70 +0.5 646,037 + fhuF NOLOHH_03645 0.71 -0.7 646,052 + fhuF NOLOHH_03645 0.73 -1.3 646,052 + fhuF NOLOHH_03645 0.73 -0.3 646,053 - fhuF NOLOHH_03645 0.74 -0.0 646,057 + fhuF NOLOHH_03645 0.74 +1.5 646,057 + fhuF NOLOHH_03645 0.74 -0.8 646,058 - fhuF NOLOHH_03645 0.74 -1.5 646,136 - fhuF NOLOHH_03645 0.84 -2.5 646,136 - fhuF NOLOHH_03645 0.84 -0.7 646,147 + fhuF NOLOHH_03645 0.85 -0.5 646,147 + fhuF NOLOHH_03645 0.85 -0.7 646,250 - -1.5 646,250 - -0.5 646,290 + -0.4 646,304 - +1.2 646,319 + +0.2 646,320 - +0.9 646,340 + +1.1 646,341 - -0.4 646,341 - +1.5 646,341 - +0.8 646,341 - -0.2 646,341 - +0.1 646,345 - +0.5 646,345 - +0.3 646,345 - +0.6 646,415 + bglJ NOLOHH_03650 0.17 -0.7 646,416 - bglJ NOLOHH_03650 0.17 -0.2 646,416 - bglJ NOLOHH_03650 0.17 +0.5 646,437 - bglJ NOLOHH_03650 0.20 +0.9 646,474 + bglJ NOLOHH_03650 0.26 -0.1 646,487 + bglJ NOLOHH_03650 0.28 +1.0 646,487 + bglJ NOLOHH_03650 0.28 +0.5 646,487 + bglJ NOLOHH_03650 0.28 -0.8 646,497 + bglJ NOLOHH_03650 0.29 -0.4 646,498 - bglJ NOLOHH_03650 0.29 -0.2 646,498 - bglJ NOLOHH_03650 0.29 -0.7 646,540 + bglJ NOLOHH_03650 0.36 +0.3 646,540 + bglJ NOLOHH_03650 0.36 -0.3 646,540 + bglJ NOLOHH_03650 0.36 -0.4 646,575 + bglJ NOLOHH_03650 0.41 +1.2 646,575 + bglJ NOLOHH_03650 0.41 -0.3 646,575 + bglJ NOLOHH_03650 0.41 +0.4 646,585 - bglJ NOLOHH_03650 0.42 -0.1 646,635 + bglJ NOLOHH_03650 0.50 +0.5 646,636 - bglJ NOLOHH_03650 0.50 -0.8 646,636 - bglJ NOLOHH_03650 0.50 +1.0 646,689 - bglJ NOLOHH_03650 0.58 +0.5 646,708 - bglJ NOLOHH_03650 0.60 -0.3 646,708 - bglJ NOLOHH_03650 0.60 -1.1 646,755 + bglJ NOLOHH_03650 0.67 -1.1 646,756 - bglJ NOLOHH_03650 0.67 -0.3 646,756 - bglJ NOLOHH_03650 0.67 +0.9 646,856 - bglJ NOLOHH_03650 0.82 +0.9 646,856 - bglJ NOLOHH_03650 0.82 -0.1 646,856 - bglJ NOLOHH_03650 0.82 +0.5 646,856 - bglJ NOLOHH_03650 0.82 +1.0 646,860 - bglJ NOLOHH_03650 0.83 +0.9 646,860 - bglJ NOLOHH_03650 0.83 +0.3 646,868 + bglJ NOLOHH_03650 0.84 +1.5 646,869 - bglJ NOLOHH_03650 0.84 +0.8 646,869 - bglJ NOLOHH_03650 0.84 +0.5 646,958 + -0.7 646,959 - +0.7 647,009 - yjjQ NOLOHH_03655 0.10 +2.1 647,009 - yjjQ NOLOHH_03655 0.10 +1.0 647,036 + yjjQ NOLOHH_03655 0.14 +0.1 647,037 - yjjQ NOLOHH_03655 0.14 +1.3 647,044 + yjjQ NOLOHH_03655 0.15 +2.6 647,047 - yjjQ NOLOHH_03655 0.16 -0.3 647,047 - yjjQ NOLOHH_03655 0.16 -2.3 647,047 - yjjQ NOLOHH_03655 0.16 +0.5 647,116 + yjjQ NOLOHH_03655 0.25 +0.5 647,166 - yjjQ NOLOHH_03655 0.32 +0.2 647,166 - yjjQ NOLOHH_03655 0.32 -1.6 647,169 - yjjQ NOLOHH_03655 0.32 +0.5 647,178 - yjjQ NOLOHH_03655 0.34 +1.1 647,219 - yjjQ NOLOHH_03655 0.39 -1.1 647,267 - yjjQ NOLOHH_03655 0.46 +0.1 647,294 + yjjQ NOLOHH_03655 0.50 -0.8 647,295 - yjjQ NOLOHH_03655 0.50 -0.5 647,337 - yjjQ NOLOHH_03655 0.56 -0.5 647,514 - yjjQ NOLOHH_03655 0.80 +2.1 647,520 - yjjQ NOLOHH_03655 0.81 +0.3 647,875 - -0.5 648,045 - -0.5 648,104 + -0.3 648,104 + +0.5 648,105 - +0.5 648,105 - +1.8 648,125 + +0.4 648,168 - -0.6 648,220 - -0.6 648,248 - -0.0 648,248 - -1.3 648,260 + +1.5 648,317 - +0.4 648,457 + yjjP NOLOHH_03660 0.23 +1.5 648,457 + yjjP NOLOHH_03660 0.23 +0.2 648,508 + yjjP NOLOHH_03660 0.30 -0.0 648,509 - yjjP NOLOHH_03660 0.30 -1.3 648,509 - yjjP NOLOHH_03660 0.30 -1.1 648,511 + yjjP NOLOHH_03660 0.30 +0.1 648,511 + yjjP NOLOHH_03660 0.30 +1.5 648,511 + yjjP NOLOHH_03660 0.30 +2.5 648,511 + yjjP NOLOHH_03660 0.30 -0.4 648,511 + yjjP NOLOHH_03660 0.30 +0.8 648,512 - yjjP NOLOHH_03660 0.30 +0.2 648,512 - yjjP NOLOHH_03660 0.30 -0.9 648,512 - yjjP NOLOHH_03660 0.30 +1.5 648,512 - yjjP NOLOHH_03660 0.30 -0.3 648,512 - yjjP NOLOHH_03660 0.30 -0.3 648,512 - yjjP NOLOHH_03660 0.30 -1.5 648,512 - yjjP NOLOHH_03660 0.30 -1.7 648,512 - yjjP NOLOHH_03660 0.30 -0.5 648,573 - yjjP NOLOHH_03660 0.38 +0.4 648,612 + yjjP NOLOHH_03660 0.43 +0.4 648,612 + yjjP NOLOHH_03660 0.43 -1.3 648,612 + yjjP NOLOHH_03660 0.43 -0.5 648,613 - yjjP NOLOHH_03660 0.43 -0.0 648,613 - yjjP NOLOHH_03660 0.43 +0.2 648,613 - yjjP NOLOHH_03660 0.43 -1.1 648,613 - yjjP NOLOHH_03660 0.43 -0.5 648,613 - yjjP NOLOHH_03660 0.43 +0.5 648,634 - yjjP NOLOHH_03660 0.46 -1.7 648,634 - yjjP NOLOHH_03660 0.46 -0.8 648,634 - yjjP NOLOHH_03660 0.46 +0.7
Or see this region's nucleotide sequence