Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt deoC and yjjI are separated by 257 nucleotides yjjI and yjjW overlap by 29 nucleotides yjjW and yjjV are separated by 112 nucleotides
NOLOHH_03565: deoC - deoxyribose-phosphate aldolase, at 633,338 to 634,117
deoC
NOLOHH_03570: yjjI - Uncharacterized protein YjjI, at 634,375 to 635,925
yjjI
NOLOHH_03575: yjjW - Putative glycyl-radical enzyme activating enzyme YjjW, at 635,897 to 636,760
yjjW
NOLOHH_03580: yjjV - metal-dependent hydrolase, at 636,873 to 637,655
yjjV
Position (kb) 634
635
636 Strain fitness (log2 ratio) -2
-1
0
1
2 at 633.474 kb on + strand, within deoC at 633.544 kb on + strand, within deoC at 633.973 kb on - strand, within deoC at 633.976 kb on + strand, within deoC at 633.976 kb on + strand, within deoC at 633.977 kb on - strand, within deoC at 633.977 kb on - strand, within deoC at 633.977 kb on - strand, within deoC at 633.977 kb on - strand, within deoC at 634.032 kb on - strand, within deoC at 634.169 kb on - strand at 634.202 kb on + strand at 634.202 kb on + strand at 634.202 kb on + strand at 634.246 kb on - strand at 634.336 kb on + strand at 634.337 kb on - strand at 634.360 kb on + strand at 634.541 kb on + strand, within yjjI at 634.541 kb on + strand, within yjjI at 634.551 kb on + strand, within yjjI at 634.552 kb on - strand, within yjjI at 634.574 kb on - strand, within yjjI at 634.585 kb on + strand, within yjjI at 634.586 kb on - strand, within yjjI at 634.701 kb on - strand, within yjjI at 634.727 kb on - strand, within yjjI at 634.946 kb on - strand, within yjjI at 634.946 kb on - strand, within yjjI at 635.044 kb on - strand, within yjjI at 635.083 kb on + strand, within yjjI at 635.178 kb on + strand, within yjjI at 635.189 kb on + strand, within yjjI at 635.271 kb on + strand, within yjjI at 635.332 kb on + strand, within yjjI at 635.332 kb on + strand, within yjjI at 635.333 kb on - strand, within yjjI at 635.333 kb on - strand, within yjjI at 635.333 kb on - strand, within yjjI at 635.333 kb on - strand, within yjjI at 635.333 kb on - strand, within yjjI at 635.333 kb on - strand, within yjjI at 635.364 kb on + strand, within yjjI at 635.364 kb on + strand, within yjjI at 635.365 kb on - strand, within yjjI at 635.365 kb on - strand, within yjjI at 635.365 kb on - strand, within yjjI at 635.473 kb on + strand, within yjjI at 635.473 kb on + strand, within yjjI at 635.473 kb on + strand, within yjjI at 635.473 kb on + strand, within yjjI at 635.473 kb on + strand, within yjjI at 635.614 kb on + strand, within yjjI at 635.615 kb on - strand, within yjjI at 635.615 kb on - strand, within yjjI at 635.615 kb on - strand, within yjjI at 635.615 kb on - strand, within yjjI at 635.617 kb on + strand, within yjjI at 635.618 kb on - strand, within yjjI at 635.620 kb on + strand, within yjjI at 635.667 kb on + strand, within yjjI at 635.684 kb on + strand, within yjjI at 635.706 kb on + strand, within yjjI at 635.770 kb on + strand, within yjjI at 635.771 kb on - strand at 635.771 kb on - strand at 635.771 kb on - strand at 635.772 kb on + strand at 635.772 kb on + strand at 635.772 kb on + strand at 635.772 kb on + strand at 635.772 kb on + strand at 635.773 kb on - strand at 635.773 kb on - strand at 635.773 kb on - strand at 635.773 kb on - strand at 635.866 kb on - strand at 635.923 kb on + strand at 635.924 kb on - strand at 635.924 kb on - strand at 636.206 kb on - strand, within yjjW at 636.232 kb on + strand, within yjjW at 636.298 kb on + strand, within yjjW at 636.298 kb on + strand, within yjjW at 636.359 kb on - strand, within yjjW at 636.557 kb on + strand, within yjjW at 636.557 kb on + strand, within yjjW at 636.557 kb on + strand, within yjjW at 636.558 kb on - strand, within yjjW at 636.558 kb on - strand, within yjjW at 636.558 kb on - strand, within yjjW at 636.590 kb on - strand, within yjjW at 636.753 kb on - strand at 636.797 kb on + strand at 636.797 kb on + strand at 636.807 kb on - strand at 636.807 kb on - strand at 636.898 kb on + strand at 636.898 kb on + strand at 636.898 kb on + strand at 636.898 kb on + strand at 636.899 kb on - strand at 636.899 kb on - strand at 636.899 kb on - strand at 636.899 kb on - strand at 636.902 kb on + strand at 636.902 kb on + strand at 636.902 kb on + strand at 636.902 kb on + strand at 636.902 kb on + strand at 636.903 kb on - strand at 636.903 kb on - strand at 636.903 kb on - strand at 636.903 kb on - strand at 636.903 kb on - strand at 636.903 kb on - strand at 636.905 kb on + strand at 636.905 kb on + strand at 636.906 kb on - strand at 636.908 kb on + strand at 636.908 kb on + strand at 636.908 kb on + strand at 636.909 kb on - strand at 636.909 kb on - strand at 636.909 kb on - strand at 636.909 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 633,474 + deoC NOLOHH_03565 0.17 -0.3 633,544 + deoC NOLOHH_03565 0.26 +0.1 633,973 - deoC NOLOHH_03565 0.81 -1.1 633,976 + deoC NOLOHH_03565 0.82 +1.5 633,976 + deoC NOLOHH_03565 0.82 +1.1 633,977 - deoC NOLOHH_03565 0.82 -0.4 633,977 - deoC NOLOHH_03565 0.82 -0.5 633,977 - deoC NOLOHH_03565 0.82 -0.1 633,977 - deoC NOLOHH_03565 0.82 +0.6 634,032 - deoC NOLOHH_03565 0.89 -0.1 634,169 - +0.7 634,202 + -0.8 634,202 + +0.5 634,202 + +0.1 634,246 - -0.2 634,336 + -0.4 634,337 - -0.5 634,360 + +0.9 634,541 + yjjI NOLOHH_03570 0.11 -0.9 634,541 + yjjI NOLOHH_03570 0.11 +1.5 634,551 + yjjI NOLOHH_03570 0.11 -0.7 634,552 - yjjI NOLOHH_03570 0.11 +1.3 634,574 - yjjI NOLOHH_03570 0.13 -0.5 634,585 + yjjI NOLOHH_03570 0.14 +0.1 634,586 - yjjI NOLOHH_03570 0.14 -2.7 634,701 - yjjI NOLOHH_03570 0.21 +0.5 634,727 - yjjI NOLOHH_03570 0.23 -1.5 634,946 - yjjI NOLOHH_03570 0.37 -0.0 634,946 - yjjI NOLOHH_03570 0.37 +0.8 635,044 - yjjI NOLOHH_03570 0.43 +0.5 635,083 + yjjI NOLOHH_03570 0.46 -1.2 635,178 + yjjI NOLOHH_03570 0.52 -0.2 635,189 + yjjI NOLOHH_03570 0.52 -0.0 635,271 + yjjI NOLOHH_03570 0.58 +0.8 635,332 + yjjI NOLOHH_03570 0.62 +0.7 635,332 + yjjI NOLOHH_03570 0.62 -0.0 635,333 - yjjI NOLOHH_03570 0.62 +0.5 635,333 - yjjI NOLOHH_03570 0.62 +0.5 635,333 - yjjI NOLOHH_03570 0.62 +0.8 635,333 - yjjI NOLOHH_03570 0.62 +1.2 635,333 - yjjI NOLOHH_03570 0.62 +0.5 635,333 - yjjI NOLOHH_03570 0.62 -0.3 635,364 + yjjI NOLOHH_03570 0.64 +1.5 635,364 + yjjI NOLOHH_03570 0.64 -1.7 635,365 - yjjI NOLOHH_03570 0.64 -0.1 635,365 - yjjI NOLOHH_03570 0.64 -0.1 635,365 - yjjI NOLOHH_03570 0.64 +0.3 635,473 + yjjI NOLOHH_03570 0.71 +0.5 635,473 + yjjI NOLOHH_03570 0.71 -1.1 635,473 + yjjI NOLOHH_03570 0.71 +0.3 635,473 + yjjI NOLOHH_03570 0.71 +0.3 635,473 + yjjI NOLOHH_03570 0.71 +0.1 635,614 + yjjI NOLOHH_03570 0.80 -0.7 635,615 - yjjI NOLOHH_03570 0.80 -1.0 635,615 - yjjI NOLOHH_03570 0.80 +0.8 635,615 - yjjI NOLOHH_03570 0.80 +1.0 635,615 - yjjI NOLOHH_03570 0.80 -0.0 635,617 + yjjI NOLOHH_03570 0.80 +1.7 635,618 - yjjI NOLOHH_03570 0.80 +0.2 635,620 + yjjI NOLOHH_03570 0.80 +0.2 635,667 + yjjI NOLOHH_03570 0.83 +0.1 635,684 + yjjI NOLOHH_03570 0.84 +2.1 635,706 + yjjI NOLOHH_03570 0.86 +0.8 635,770 + yjjI NOLOHH_03570 0.90 +0.9 635,771 - -1.0 635,771 - +0.2 635,771 - -0.6 635,772 + -0.3 635,772 + -0.3 635,772 + +0.7 635,772 + -0.3 635,772 + +0.3 635,773 - +0.5 635,773 - -1.8 635,773 - +0.2 635,773 - +0.1 635,866 - +0.0 635,923 + -0.2 635,924 - +0.0 635,924 - +0.1 636,206 - yjjW NOLOHH_03575 0.36 +2.1 636,232 + yjjW NOLOHH_03575 0.39 +1.0 636,298 + yjjW NOLOHH_03575 0.46 -0.3 636,298 + yjjW NOLOHH_03575 0.46 -0.8 636,359 - yjjW NOLOHH_03575 0.53 -0.7 636,557 + yjjW NOLOHH_03575 0.76 +0.4 636,557 + yjjW NOLOHH_03575 0.76 -0.0 636,557 + yjjW NOLOHH_03575 0.76 -0.3 636,558 - yjjW NOLOHH_03575 0.77 -0.2 636,558 - yjjW NOLOHH_03575 0.77 -0.5 636,558 - yjjW NOLOHH_03575 0.77 +0.2 636,590 - yjjW NOLOHH_03575 0.80 +0.3 636,753 - -0.2 636,797 + +0.1 636,797 + +0.7 636,807 - -0.6 636,807 - +0.7 636,898 + +0.1 636,898 + +1.5 636,898 + +0.1 636,898 + +0.4 636,899 - -0.0 636,899 - +0.5 636,899 - -0.1 636,899 - +0.2 636,902 + +0.2 636,902 + +0.5 636,902 + -1.1 636,902 + -0.0 636,902 + -1.4 636,903 - +1.1 636,903 - -0.6 636,903 - -0.7 636,903 - -0.8 636,903 - -0.8 636,903 - +1.7 636,905 + +0.5 636,905 + -0.3 636,906 - +1.5 636,908 + +0.5 636,908 + -0.9 636,908 + +0.7 636,909 - -0.1 636,909 - +1.5 636,909 - -1.8 636,909 - -1.1
Or see this region's nucleotide sequence