Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_03560 and deoC are separated by 232 nucleotides deoC and yjjI are separated by 257 nucleotides
NOLOHH_03560: NOLOHH_03560 - IS110-like element IS621 family transposase, at 632,125 to 633,105
_03560
NOLOHH_03565: deoC - deoxyribose-phosphate aldolase, at 633,338 to 634,117
deoC
NOLOHH_03570: yjjI - Uncharacterized protein YjjI, at 634,375 to 635,925
yjjI
Position (kb) 633
634
635 Strain fitness (log2 ratio) -2
-1
0
1 at 633.290 kb on + strand at 633.290 kb on + strand at 633.293 kb on + strand at 633.293 kb on + strand at 633.293 kb on + strand at 633.293 kb on + strand at 633.293 kb on + strand at 633.293 kb on + strand at 633.293 kb on + strand at 633.293 kb on + strand at 633.293 kb on + strand at 633.293 kb on + strand at 633.293 kb on + strand at 633.293 kb on + strand at 633.335 kb on + strand at 633.335 kb on + strand at 633.335 kb on + strand at 633.335 kb on + strand at 633.336 kb on - strand at 633.339 kb on + strand at 633.339 kb on + strand at 633.339 kb on + strand at 633.339 kb on + strand at 633.339 kb on + strand at 633.340 kb on - strand at 633.340 kb on - strand at 633.340 kb on - strand at 633.340 kb on - strand at 633.340 kb on - strand at 633.474 kb on + strand, within deoC at 633.544 kb on + strand, within deoC at 633.973 kb on - strand, within deoC at 633.976 kb on + strand, within deoC at 633.976 kb on + strand, within deoC at 633.977 kb on - strand, within deoC at 633.977 kb on - strand, within deoC at 633.977 kb on - strand, within deoC at 633.977 kb on - strand, within deoC at 634.032 kb on - strand, within deoC at 634.169 kb on - strand at 634.202 kb on + strand at 634.202 kb on + strand at 634.202 kb on + strand at 634.246 kb on - strand at 634.336 kb on + strand at 634.337 kb on - strand at 634.360 kb on + strand at 634.541 kb on + strand, within yjjI at 634.541 kb on + strand, within yjjI at 634.551 kb on + strand, within yjjI at 634.552 kb on - strand, within yjjI at 634.574 kb on - strand, within yjjI at 634.585 kb on + strand, within yjjI at 634.586 kb on - strand, within yjjI at 634.701 kb on - strand, within yjjI at 634.727 kb on - strand, within yjjI at 634.946 kb on - strand, within yjjI at 634.946 kb on - strand, within yjjI at 635.044 kb on - strand, within yjjI at 635.083 kb on + strand, within yjjI
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 633,290 + -0.3 633,290 + +1.5 633,293 + +0.1 633,293 + +0.9 633,293 + +0.7 633,293 + -0.4 633,293 + +0.2 633,293 + +0.8 633,293 + -2.5 633,293 + +0.3 633,293 + -0.4 633,293 + +0.1 633,293 + -0.5 633,293 + +0.0 633,335 + +0.7 633,335 + +0.7 633,335 + -1.7 633,335 + -0.3 633,336 - -0.4 633,339 + +1.5 633,339 + +0.5 633,339 + -0.1 633,339 + -0.7 633,339 + +0.3 633,340 - -1.0 633,340 - -0.3 633,340 - +0.1 633,340 - +0.6 633,340 - +1.0 633,474 + deoC NOLOHH_03565 0.17 -0.3 633,544 + deoC NOLOHH_03565 0.26 +0.1 633,973 - deoC NOLOHH_03565 0.81 -1.1 633,976 + deoC NOLOHH_03565 0.82 +1.5 633,976 + deoC NOLOHH_03565 0.82 +1.1 633,977 - deoC NOLOHH_03565 0.82 -0.4 633,977 - deoC NOLOHH_03565 0.82 -0.5 633,977 - deoC NOLOHH_03565 0.82 -0.1 633,977 - deoC NOLOHH_03565 0.82 +0.6 634,032 - deoC NOLOHH_03565 0.89 -0.1 634,169 - +0.7 634,202 + -0.8 634,202 + +0.5 634,202 + +0.1 634,246 - -0.2 634,336 + -0.4 634,337 - -0.5 634,360 + +0.9 634,541 + yjjI NOLOHH_03570 0.11 -0.9 634,541 + yjjI NOLOHH_03570 0.11 +1.5 634,551 + yjjI NOLOHH_03570 0.11 -0.7 634,552 - yjjI NOLOHH_03570 0.11 +1.3 634,574 - yjjI NOLOHH_03570 0.13 -0.5 634,585 + yjjI NOLOHH_03570 0.14 +0.1 634,586 - yjjI NOLOHH_03570 0.14 -2.7 634,701 - yjjI NOLOHH_03570 0.21 +0.5 634,727 - yjjI NOLOHH_03570 0.23 -1.5 634,946 - yjjI NOLOHH_03570 0.37 -0.0 634,946 - yjjI NOLOHH_03570 0.37 +0.8 635,044 - yjjI NOLOHH_03570 0.43 +0.5 635,083 + yjjI NOLOHH_03570 0.46 -1.2
Or see this region's nucleotide sequence