Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt creD and creC are separated by 57 nucleotides creC and creB overlap by 1 nucleotides creB and creA are separated by 12 nucleotides
NOLOHH_03460: creD - cell envelope integrity protein CreD, at 611,757 to 613,109
creD
NOLOHH_03465: creC - two-component system sensor histidine kinase CreC, at 613,167 to 614,591
creC
NOLOHH_03470: creB - two-component system response regulator CreB, at 614,591 to 615,280
creB
NOLOHH_03475: creA - protein CreA, at 615,293 to 615,766
creA
Position (kb) 613
614
615 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 612.188 kb on + strand, within creD at 612.245 kb on - strand, within creD at 612.335 kb on + strand, within creD at 612.336 kb on - strand, within creD at 612.414 kb on + strand, within creD at 612.415 kb on - strand, within creD at 612.462 kb on - strand, within creD at 612.462 kb on - strand, within creD at 612.515 kb on + strand, within creD at 612.653 kb on + strand, within creD at 612.684 kb on - strand, within creD at 612.696 kb on + strand, within creD at 612.696 kb on + strand, within creD at 612.696 kb on + strand, within creD at 612.704 kb on + strand, within creD at 612.704 kb on + strand, within creD at 612.704 kb on + strand, within creD at 612.704 kb on + strand, within creD at 612.785 kb on + strand, within creD at 612.787 kb on + strand, within creD at 612.787 kb on + strand, within creD at 612.788 kb on - strand, within creD at 612.788 kb on - strand, within creD at 612.788 kb on - strand, within creD at 612.796 kb on - strand, within creD at 612.846 kb on + strand, within creD at 612.888 kb on - strand, within creD at 612.905 kb on + strand, within creD at 612.905 kb on + strand, within creD at 612.905 kb on + strand, within creD at 612.905 kb on + strand, within creD at 612.907 kb on + strand, within creD at 612.908 kb on - strand, within creD at 612.965 kb on + strand, within creD at 612.965 kb on + strand, within creD at 613.059 kb on + strand at 613.059 kb on + strand at 613.060 kb on - strand at 613.109 kb on + strand at 613.109 kb on + strand at 613.110 kb on - strand at 613.110 kb on - strand at 613.110 kb on - strand at 613.138 kb on + strand at 613.147 kb on + strand at 613.148 kb on - strand at 613.148 kb on - strand at 613.148 kb on - strand at 613.148 kb on - strand at 613.168 kb on + strand at 613.168 kb on + strand at 613.169 kb on - strand at 613.169 kb on - strand at 613.169 kb on - strand at 613.169 kb on - strand at 613.322 kb on - strand, within creC at 613.338 kb on - strand, within creC at 613.362 kb on - strand, within creC at 613.420 kb on - strand, within creC at 613.427 kb on + strand, within creC at 613.427 kb on + strand, within creC at 613.427 kb on + strand, within creC at 613.428 kb on - strand, within creC at 613.428 kb on - strand, within creC at 613.428 kb on - strand, within creC at 613.467 kb on + strand, within creC at 613.467 kb on + strand, within creC at 613.491 kb on + strand, within creC at 613.515 kb on - strand, within creC at 613.536 kb on + strand, within creC at 613.536 kb on + strand, within creC at 613.536 kb on + strand, within creC at 613.536 kb on + strand, within creC at 613.537 kb on - strand, within creC at 613.537 kb on - strand, within creC at 613.537 kb on - strand, within creC at 613.594 kb on - strand, within creC at 613.657 kb on - strand, within creC at 613.657 kb on - strand, within creC at 613.657 kb on - strand, within creC at 613.659 kb on + strand, within creC at 613.810 kb on + strand, within creC at 613.811 kb on - strand, within creC at 613.816 kb on + strand, within creC at 613.817 kb on - strand, within creC at 613.817 kb on - strand, within creC at 613.827 kb on - strand, within creC at 613.827 kb on - strand, within creC at 613.827 kb on - strand, within creC at 613.829 kb on - strand, within creC at 613.856 kb on + strand, within creC at 613.856 kb on + strand, within creC at 613.856 kb on + strand, within creC at 613.857 kb on - strand, within creC at 613.857 kb on - strand, within creC at 613.881 kb on - strand, within creC at 613.922 kb on + strand, within creC at 613.945 kb on + strand, within creC at 614.060 kb on + strand, within creC at 614.061 kb on - strand, within creC at 614.095 kb on - strand, within creC at 614.146 kb on + strand, within creC at 614.146 kb on + strand, within creC at 614.146 kb on + strand, within creC at 614.147 kb on - strand, within creC at 614.147 kb on - strand, within creC at 614.147 kb on - strand, within creC at 614.147 kb on - strand, within creC at 614.147 kb on - strand, within creC at 614.147 kb on - strand, within creC at 614.147 kb on - strand, within creC at 614.147 kb on - strand, within creC at 614.200 kb on + strand, within creC at 614.201 kb on - strand, within creC at 614.262 kb on - strand, within creC at 614.280 kb on + strand, within creC at 614.281 kb on - strand, within creC at 614.281 kb on - strand, within creC at 614.303 kb on + strand, within creC at 614.304 kb on - strand, within creC at 614.304 kb on - strand, within creC at 614.304 kb on - strand, within creC at 614.305 kb on + strand, within creC at 614.305 kb on + strand, within creC at 614.305 kb on + strand, within creC at 614.305 kb on + strand, within creC at 614.305 kb on + strand, within creC at 614.306 kb on - strand, within creC at 614.306 kb on - strand, within creC at 614.306 kb on - strand, within creC at 614.314 kb on + strand, within creC at 614.314 kb on + strand, within creC at 614.315 kb on - strand, within creC at 614.315 kb on - strand, within creC at 614.315 kb on - strand, within creC at 614.334 kb on - strand, within creC at 614.370 kb on + strand, within creC at 614.370 kb on + strand, within creC at 614.370 kb on + strand, within creC at 614.371 kb on - strand, within creC at 614.527 kb on - strand at 614.592 kb on + strand at 614.593 kb on - strand at 614.609 kb on - strand at 614.609 kb on - strand at 614.609 kb on - strand at 614.609 kb on - strand at 614.629 kb on + strand at 614.629 kb on + strand at 614.630 kb on - strand at 614.683 kb on + strand, within creB at 614.683 kb on + strand, within creB at 614.684 kb on - strand, within creB at 614.709 kb on + strand, within creB at 614.709 kb on + strand, within creB at 614.710 kb on - strand, within creB at 614.710 kb on - strand, within creB at 614.710 kb on - strand, within creB at 614.809 kb on - strand, within creB at 614.882 kb on - strand, within creB at 614.882 kb on - strand, within creB at 614.927 kb on + strand, within creB at 614.971 kb on + strand, within creB at 614.979 kb on + strand, within creB at 614.979 kb on + strand, within creB at 614.979 kb on + strand, within creB at 615.047 kb on + strand, within creB at 615.047 kb on + strand, within creB at 615.047 kb on + strand, within creB at 615.047 kb on - strand, within creB at 615.087 kb on - strand, within creB at 615.219 kb on + strand at 615.219 kb on + strand at 615.220 kb on - strand at 615.220 kb on - strand at 615.280 kb on + strand at 615.280 kb on + strand at 615.280 kb on + strand at 615.281 kb on - strand at 615.294 kb on + strand at 615.294 kb on + strand at 615.394 kb on + strand, within creA at 615.402 kb on + strand, within creA at 615.402 kb on + strand, within creA at 615.402 kb on + strand, within creA at 615.427 kb on + strand, within creA at 615.427 kb on + strand, within creA at 615.428 kb on - strand, within creA at 615.442 kb on + strand, within creA at 615.442 kb on + strand, within creA at 615.443 kb on - strand, within creA at 615.443 kb on - strand, within creA at 615.456 kb on - strand, within creA at 615.458 kb on + strand, within creA at 615.458 kb on + strand, within creA at 615.459 kb on - strand, within creA at 615.459 kb on - strand, within creA at 615.484 kb on + strand, within creA at 615.485 kb on - strand, within creA at 615.571 kb on + strand, within creA at 615.571 kb on + strand, within creA at 615.574 kb on + strand, within creA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 612,188 + creD NOLOHH_03460 0.32 +1.7 612,245 - creD NOLOHH_03460 0.36 +0.5 612,335 + creD NOLOHH_03460 0.43 -1.3 612,336 - creD NOLOHH_03460 0.43 -1.0 612,414 + creD NOLOHH_03460 0.49 -0.5 612,415 - creD NOLOHH_03460 0.49 +0.5 612,462 - creD NOLOHH_03460 0.52 -1.1 612,462 - creD NOLOHH_03460 0.52 -0.7 612,515 + creD NOLOHH_03460 0.56 -1.3 612,653 + creD NOLOHH_03460 0.66 -0.5 612,684 - creD NOLOHH_03460 0.69 +0.5 612,696 + creD NOLOHH_03460 0.69 +0.8 612,696 + creD NOLOHH_03460 0.69 +0.0 612,696 + creD NOLOHH_03460 0.69 -1.1 612,704 + creD NOLOHH_03460 0.70 -0.9 612,704 + creD NOLOHH_03460 0.70 +0.0 612,704 + creD NOLOHH_03460 0.70 -0.0 612,704 + creD NOLOHH_03460 0.70 +0.3 612,785 + creD NOLOHH_03460 0.76 -0.0 612,787 + creD NOLOHH_03460 0.76 +0.2 612,787 + creD NOLOHH_03460 0.76 -0.0 612,788 - creD NOLOHH_03460 0.76 +1.3 612,788 - creD NOLOHH_03460 0.76 +0.1 612,788 - creD NOLOHH_03460 0.76 +0.9 612,796 - creD NOLOHH_03460 0.77 +0.5 612,846 + creD NOLOHH_03460 0.80 +0.5 612,888 - creD NOLOHH_03460 0.84 -0.9 612,905 + creD NOLOHH_03460 0.85 +0.9 612,905 + creD NOLOHH_03460 0.85 +1.1 612,905 + creD NOLOHH_03460 0.85 +0.5 612,905 + creD NOLOHH_03460 0.85 -0.0 612,907 + creD NOLOHH_03460 0.85 +0.5 612,908 - creD NOLOHH_03460 0.85 +1.0 612,965 + creD NOLOHH_03460 0.89 +0.3 612,965 + creD NOLOHH_03460 0.89 -0.5 613,059 + -0.1 613,059 + -0.2 613,060 - +0.3 613,109 + +0.9 613,109 + -0.6 613,110 - +0.4 613,110 - +1.5 613,110 - +2.5 613,138 + +0.2 613,147 + +0.5 613,148 - -0.7 613,148 - -1.0 613,148 - +0.1 613,148 - +0.1 613,168 + -0.4 613,168 + +0.4 613,169 - -1.4 613,169 - +0.3 613,169 - -0.1 613,169 - -0.9 613,322 - creC NOLOHH_03465 0.11 -0.2 613,338 - creC NOLOHH_03465 0.12 +1.5 613,362 - creC NOLOHH_03465 0.14 +0.3 613,420 - creC NOLOHH_03465 0.18 +0.1 613,427 + creC NOLOHH_03465 0.18 +0.7 613,427 + creC NOLOHH_03465 0.18 -0.5 613,427 + creC NOLOHH_03465 0.18 +0.9 613,428 - creC NOLOHH_03465 0.18 -0.1 613,428 - creC NOLOHH_03465 0.18 +0.5 613,428 - creC NOLOHH_03465 0.18 -0.5 613,467 + creC NOLOHH_03465 0.21 -0.9 613,467 + creC NOLOHH_03465 0.21 -0.7 613,491 + creC NOLOHH_03465 0.23 -0.5 613,515 - creC NOLOHH_03465 0.24 +0.5 613,536 + creC NOLOHH_03465 0.26 +1.3 613,536 + creC NOLOHH_03465 0.26 +0.2 613,536 + creC NOLOHH_03465 0.26 -0.7 613,536 + creC NOLOHH_03465 0.26 -0.7 613,537 - creC NOLOHH_03465 0.26 +1.0 613,537 - creC NOLOHH_03465 0.26 +1.1 613,537 - creC NOLOHH_03465 0.26 -0.3 613,594 - creC NOLOHH_03465 0.30 -0.5 613,657 - creC NOLOHH_03465 0.34 +0.3 613,657 - creC NOLOHH_03465 0.34 +1.0 613,657 - creC NOLOHH_03465 0.34 -0.4 613,659 + creC NOLOHH_03465 0.35 +0.5 613,810 + creC NOLOHH_03465 0.45 -0.0 613,811 - creC NOLOHH_03465 0.45 -1.1 613,816 + creC NOLOHH_03465 0.46 -0.5 613,817 - creC NOLOHH_03465 0.46 -0.3 613,817 - creC NOLOHH_03465 0.46 +0.6 613,827 - creC NOLOHH_03465 0.46 +0.2 613,827 - creC NOLOHH_03465 0.46 -0.1 613,827 - creC NOLOHH_03465 0.46 +0.6 613,829 - creC NOLOHH_03465 0.46 +1.1 613,856 + creC NOLOHH_03465 0.48 +0.2 613,856 + creC NOLOHH_03465 0.48 +1.4 613,856 + creC NOLOHH_03465 0.48 +0.9 613,857 - creC NOLOHH_03465 0.48 -1.7 613,857 - creC NOLOHH_03465 0.48 +0.3 613,881 - creC NOLOHH_03465 0.50 -0.4 613,922 + creC NOLOHH_03465 0.53 -0.8 613,945 + creC NOLOHH_03465 0.55 -0.3 614,060 + creC NOLOHH_03465 0.63 -1.2 614,061 - creC NOLOHH_03465 0.63 +0.7 614,095 - creC NOLOHH_03465 0.65 +1.5 614,146 + creC NOLOHH_03465 0.69 +0.5 614,146 + creC NOLOHH_03465 0.69 +0.2 614,146 + creC NOLOHH_03465 0.69 +0.1 614,147 - creC NOLOHH_03465 0.69 -0.8 614,147 - creC NOLOHH_03465 0.69 +0.9 614,147 - creC NOLOHH_03465 0.69 -0.1 614,147 - creC NOLOHH_03465 0.69 +0.6 614,147 - creC NOLOHH_03465 0.69 +0.1 614,147 - creC NOLOHH_03465 0.69 -0.1 614,147 - creC NOLOHH_03465 0.69 -0.4 614,147 - creC NOLOHH_03465 0.69 +2.1 614,200 + creC NOLOHH_03465 0.72 +0.5 614,201 - creC NOLOHH_03465 0.73 +0.1 614,262 - creC NOLOHH_03465 0.77 -0.2 614,280 + creC NOLOHH_03465 0.78 -0.8 614,281 - creC NOLOHH_03465 0.78 +0.1 614,281 - creC NOLOHH_03465 0.78 +0.4 614,303 + creC NOLOHH_03465 0.80 +0.1 614,304 - creC NOLOHH_03465 0.80 +0.4 614,304 - creC NOLOHH_03465 0.80 -3.5 614,304 - creC NOLOHH_03465 0.80 +0.4 614,305 + creC NOLOHH_03465 0.80 -0.7 614,305 + creC NOLOHH_03465 0.80 -1.8 614,305 + creC NOLOHH_03465 0.80 +0.3 614,305 + creC NOLOHH_03465 0.80 +1.8 614,305 + creC NOLOHH_03465 0.80 -0.3 614,306 - creC NOLOHH_03465 0.80 -0.1 614,306 - creC NOLOHH_03465 0.80 +0.4 614,306 - creC NOLOHH_03465 0.80 -0.1 614,314 + creC NOLOHH_03465 0.80 +0.5 614,314 + creC NOLOHH_03465 0.80 +1.7 614,315 - creC NOLOHH_03465 0.81 -0.2 614,315 - creC NOLOHH_03465 0.81 -0.5 614,315 - creC NOLOHH_03465 0.81 -0.5 614,334 - creC NOLOHH_03465 0.82 +0.1 614,370 + creC NOLOHH_03465 0.84 -0.0 614,370 + creC NOLOHH_03465 0.84 -0.8 614,370 + creC NOLOHH_03465 0.84 +1.2 614,371 - creC NOLOHH_03465 0.84 -0.4 614,527 - +0.5 614,592 + +0.2 614,593 - -0.2 614,609 - +0.9 614,609 - -0.1 614,609 - +0.5 614,609 - +1.1 614,629 + +1.4 614,629 + +0.5 614,630 - +0.4 614,683 + creB NOLOHH_03470 0.13 -0.7 614,683 + creB NOLOHH_03470 0.13 +1.5 614,684 - creB NOLOHH_03470 0.13 -0.9 614,709 + creB NOLOHH_03470 0.17 +1.4 614,709 + creB NOLOHH_03470 0.17 +0.3 614,710 - creB NOLOHH_03470 0.17 +2.1 614,710 - creB NOLOHH_03470 0.17 -0.7 614,710 - creB NOLOHH_03470 0.17 +0.2 614,809 - creB NOLOHH_03470 0.32 -1.8 614,882 - creB NOLOHH_03470 0.42 +0.9 614,882 - creB NOLOHH_03470 0.42 -0.7 614,927 + creB NOLOHH_03470 0.49 +0.3 614,971 + creB NOLOHH_03470 0.55 -0.4 614,979 + creB NOLOHH_03470 0.56 -0.5 614,979 + creB NOLOHH_03470 0.56 -0.7 614,979 + creB NOLOHH_03470 0.56 +0.3 615,047 + creB NOLOHH_03470 0.66 -0.2 615,047 + creB NOLOHH_03470 0.66 +0.2 615,047 + creB NOLOHH_03470 0.66 +2.1 615,047 - creB NOLOHH_03470 0.66 -0.7 615,087 - creB NOLOHH_03470 0.72 -1.8 615,219 + +0.7 615,219 + +0.5 615,220 - +0.3 615,220 - -1.1 615,280 + +0.7 615,280 + +0.9 615,280 + +0.6 615,281 - -1.7 615,294 + +0.1 615,294 + +0.7 615,394 + creA NOLOHH_03475 0.21 +1.7 615,402 + creA NOLOHH_03475 0.23 +0.5 615,402 + creA NOLOHH_03475 0.23 -0.0 615,402 + creA NOLOHH_03475 0.23 -0.5 615,427 + creA NOLOHH_03475 0.28 -2.0 615,427 + creA NOLOHH_03475 0.28 -1.1 615,428 - creA NOLOHH_03475 0.28 +0.9 615,442 + creA NOLOHH_03475 0.31 +0.5 615,442 + creA NOLOHH_03475 0.31 -0.4 615,443 - creA NOLOHH_03475 0.32 +0.1 615,443 - creA NOLOHH_03475 0.32 +0.5 615,456 - creA NOLOHH_03475 0.34 +0.3 615,458 + creA NOLOHH_03475 0.35 +0.5 615,458 + creA NOLOHH_03475 0.35 -0.3 615,459 - creA NOLOHH_03475 0.35 -0.1 615,459 - creA NOLOHH_03475 0.35 +1.0 615,484 + creA NOLOHH_03475 0.40 +0.9 615,485 - creA NOLOHH_03475 0.41 -0.5 615,571 + creA NOLOHH_03475 0.59 +0.1 615,571 + creA NOLOHH_03475 0.59 -1.5 615,574 + creA NOLOHH_03475 0.59 -3.1
Or see this region's nucleotide sequence