Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt msyB and satP are separated by 148 nucleotides satP and mog are separated by 34 nucleotides mog and NOLOHH_03410 are separated by 114 nucleotides
NOLOHH_03395: msyB - acidic protein MsyB, at 598,280 to 598,993
msyB
NOLOHH_03400: satP - acetate uptake transporter, at 599,142 to 599,708
satP
NOLOHH_03405: mog - molybdopterin adenylyltransferase, at 599,743 to 600,330
mog
NOLOHH_03410: NOLOHH_03410 - transaldolase B, at 600,445 to 601,398
_03410
Position (kb) 599
600
601 Strain fitness (log2 ratio) -1
0
1
2 at 598.810 kb on - strand, within msyB at 598.833 kb on + strand, within msyB at 598.833 kb on + strand, within msyB at 598.834 kb on - strand, within msyB at 598.834 kb on - strand, within msyB at 598.834 kb on - strand, within msyB at 598.878 kb on + strand, within msyB at 598.878 kb on + strand, within msyB at 598.878 kb on + strand, within msyB at 598.879 kb on - strand, within msyB at 598.879 kb on - strand, within msyB at 598.891 kb on - strand, within msyB at 599.000 kb on - strand at 599.061 kb on + strand at 599.086 kb on - strand at 599.092 kb on - strand at 599.153 kb on + strand at 599.153 kb on + strand at 599.153 kb on + strand at 599.252 kb on + strand, within satP at 599.253 kb on - strand, within satP at 599.253 kb on - strand, within satP at 599.355 kb on + strand, within satP at 599.355 kb on + strand, within satP at 599.355 kb on + strand, within satP at 599.445 kb on + strand, within satP at 599.446 kb on - strand, within satP at 599.446 kb on - strand, within satP at 599.446 kb on - strand, within satP at 599.464 kb on + strand, within satP at 599.464 kb on + strand, within satP at 599.465 kb on - strand, within satP at 599.465 kb on - strand, within satP at 599.468 kb on + strand, within satP at 599.477 kb on + strand, within satP at 599.478 kb on - strand, within satP at 599.478 kb on - strand, within satP at 599.478 kb on - strand, within satP at 599.637 kb on + strand, within satP at 599.637 kb on + strand, within satP at 599.638 kb on - strand, within satP at 599.656 kb on + strand at 599.657 kb on - strand at 599.707 kb on - strand at 599.813 kb on + strand, within mog at 599.814 kb on - strand, within mog at 599.814 kb on - strand, within mog at 599.840 kb on + strand, within mog at 599.846 kb on - strand, within mog at 599.846 kb on - strand, within mog at 599.846 kb on - strand, within mog at 599.859 kb on + strand, within mog at 599.867 kb on - strand, within mog at 599.867 kb on - strand, within mog at 599.914 kb on - strand, within mog at 599.916 kb on + strand, within mog at 599.917 kb on - strand, within mog at 599.917 kb on - strand, within mog at 599.936 kb on - strand, within mog at 600.013 kb on + strand, within mog at 600.014 kb on - strand, within mog at 600.014 kb on - strand, within mog at 600.082 kb on + strand, within mog at 600.082 kb on + strand, within mog at 600.148 kb on + strand, within mog at 600.149 kb on - strand, within mog at 600.193 kb on + strand, within mog at 600.307 kb on + strand at 600.315 kb on + strand at 600.315 kb on + strand at 600.315 kb on + strand at 600.319 kb on + strand at 600.319 kb on + strand at 600.320 kb on - strand at 600.320 kb on - strand at 600.325 kb on - strand at 600.371 kb on + strand at 600.372 kb on - strand at 600.372 kb on - strand at 600.372 kb on - strand at 600.372 kb on - strand at 600.436 kb on + strand at 600.437 kb on - strand at 600.446 kb on + strand at 600.446 kb on + strand at 600.447 kb on - strand at 600.505 kb on - strand at 600.519 kb on + strand at 600.520 kb on - strand at 600.523 kb on + strand at 600.605 kb on + strand, within NOLOHH_03410 at 600.605 kb on + strand, within NOLOHH_03410 at 600.615 kb on + strand, within NOLOHH_03410 at 600.660 kb on + strand, within NOLOHH_03410 at 600.660 kb on + strand, within NOLOHH_03410 at 600.661 kb on - strand, within NOLOHH_03410 at 600.661 kb on - strand, within NOLOHH_03410 at 600.672 kb on + strand, within NOLOHH_03410 at 600.672 kb on + strand, within NOLOHH_03410 at 600.672 kb on + strand, within NOLOHH_03410 at 600.673 kb on - strand, within NOLOHH_03410 at 600.761 kb on + strand, within NOLOHH_03410 at 600.764 kb on + strand, within NOLOHH_03410 at 600.771 kb on - strand, within NOLOHH_03410 at 600.782 kb on - strand, within NOLOHH_03410 at 600.816 kb on - strand, within NOLOHH_03410 at 600.825 kb on + strand, within NOLOHH_03410 at 600.826 kb on - strand, within NOLOHH_03410 at 600.831 kb on + strand, within NOLOHH_03410 at 600.842 kb on + strand, within NOLOHH_03410 at 600.994 kb on - strand, within NOLOHH_03410 at 600.994 kb on - strand, within NOLOHH_03410 at 601.015 kb on - strand, within NOLOHH_03410 at 601.015 kb on - strand, within NOLOHH_03410 at 601.027 kb on - strand, within NOLOHH_03410 at 601.027 kb on - strand, within NOLOHH_03410 at 601.044 kb on - strand, within NOLOHH_03410 at 601.092 kb on - strand, within NOLOHH_03410 at 601.092 kb on - strand, within NOLOHH_03410 at 601.159 kb on - strand, within NOLOHH_03410 at 601.162 kb on + strand, within NOLOHH_03410 at 601.163 kb on - strand, within NOLOHH_03410 at 601.163 kb on - strand, within NOLOHH_03410 at 601.163 kb on - strand, within NOLOHH_03410 at 601.251 kb on + strand, within NOLOHH_03410 at 601.251 kb on + strand, within NOLOHH_03410 at 601.251 kb on + strand, within NOLOHH_03410 at 601.252 kb on - strand, within NOLOHH_03410 at 601.256 kb on + strand, within NOLOHH_03410 at 601.320 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 598,810 - msyB NOLOHH_03395 0.74 +1.1 598,833 + msyB NOLOHH_03395 0.77 -0.0 598,833 + msyB NOLOHH_03395 0.77 +0.3 598,834 - msyB NOLOHH_03395 0.78 -0.2 598,834 - msyB NOLOHH_03395 0.78 -1.1 598,834 - msyB NOLOHH_03395 0.78 -0.1 598,878 + msyB NOLOHH_03395 0.84 -0.5 598,878 + msyB NOLOHH_03395 0.84 +1.4 598,878 + msyB NOLOHH_03395 0.84 -0.5 598,879 - msyB NOLOHH_03395 0.84 -0.9 598,879 - msyB NOLOHH_03395 0.84 -0.5 598,891 - msyB NOLOHH_03395 0.86 +0.5 599,000 - +0.5 599,061 + +1.7 599,086 - +0.3 599,092 - +2.5 599,153 + +0.2 599,153 + -1.5 599,153 + +0.5 599,252 + satP NOLOHH_03400 0.19 -0.5 599,253 - satP NOLOHH_03400 0.20 -1.1 599,253 - satP NOLOHH_03400 0.20 +0.4 599,355 + satP NOLOHH_03400 0.38 +0.1 599,355 + satP NOLOHH_03400 0.38 -0.2 599,355 + satP NOLOHH_03400 0.38 -1.3 599,445 + satP NOLOHH_03400 0.53 +0.4 599,446 - satP NOLOHH_03400 0.54 +0.8 599,446 - satP NOLOHH_03400 0.54 -0.6 599,446 - satP NOLOHH_03400 0.54 -0.5 599,464 + satP NOLOHH_03400 0.57 -1.1 599,464 + satP NOLOHH_03400 0.57 +0.9 599,465 - satP NOLOHH_03400 0.57 -0.2 599,465 - satP NOLOHH_03400 0.57 +1.0 599,468 + satP NOLOHH_03400 0.57 +0.1 599,477 + satP NOLOHH_03400 0.59 +0.3 599,478 - satP NOLOHH_03400 0.59 +0.9 599,478 - satP NOLOHH_03400 0.59 +2.5 599,478 - satP NOLOHH_03400 0.59 +0.5 599,637 + satP NOLOHH_03400 0.87 -0.7 599,637 + satP NOLOHH_03400 0.87 -1.1 599,638 - satP NOLOHH_03400 0.87 -0.7 599,656 + -0.0 599,657 - -0.4 599,707 - -1.5 599,813 + mog NOLOHH_03405 0.12 +1.1 599,814 - mog NOLOHH_03405 0.12 -0.3 599,814 - mog NOLOHH_03405 0.12 +0.2 599,840 + mog NOLOHH_03405 0.16 -1.1 599,846 - mog NOLOHH_03405 0.18 -0.8 599,846 - mog NOLOHH_03405 0.18 -0.1 599,846 - mog NOLOHH_03405 0.18 +0.7 599,859 + mog NOLOHH_03405 0.20 +1.7 599,867 - mog NOLOHH_03405 0.21 -0.3 599,867 - mog NOLOHH_03405 0.21 +0.5 599,914 - mog NOLOHH_03405 0.29 -0.9 599,916 + mog NOLOHH_03405 0.29 +0.1 599,917 - mog NOLOHH_03405 0.30 -0.3 599,917 - mog NOLOHH_03405 0.30 +0.2 599,936 - mog NOLOHH_03405 0.33 +0.3 600,013 + mog NOLOHH_03405 0.46 +0.9 600,014 - mog NOLOHH_03405 0.46 -0.3 600,014 - mog NOLOHH_03405 0.46 +0.5 600,082 + mog NOLOHH_03405 0.58 +1.3 600,082 + mog NOLOHH_03405 0.58 +1.7 600,148 + mog NOLOHH_03405 0.69 -0.8 600,149 - mog NOLOHH_03405 0.69 -1.4 600,193 + mog NOLOHH_03405 0.77 -0.5 600,307 + +1.7 600,315 + -0.8 600,315 + +0.2 600,315 + -0.2 600,319 + -1.3 600,319 + -0.2 600,320 - -0.5 600,320 - +0.8 600,325 - -0.7 600,371 + +0.3 600,372 - -0.5 600,372 - +0.6 600,372 - +0.7 600,372 - -0.2 600,436 + +0.1 600,437 - -0.7 600,446 + -0.8 600,446 + +0.5 600,447 - -0.1 600,505 - -0.0 600,519 + -1.2 600,520 - -0.5 600,523 + +0.5 600,605 + NOLOHH_03410 0.17 -0.8 600,605 + NOLOHH_03410 0.17 +0.2 600,615 + NOLOHH_03410 0.18 -0.4 600,660 + NOLOHH_03410 0.23 +0.5 600,660 + NOLOHH_03410 0.23 +0.3 600,661 - NOLOHH_03410 0.23 +0.1 600,661 - NOLOHH_03410 0.23 +0.5 600,672 + NOLOHH_03410 0.24 +1.5 600,672 + NOLOHH_03410 0.24 -1.5 600,672 + NOLOHH_03410 0.24 +1.2 600,673 - NOLOHH_03410 0.24 +0.5 600,761 + NOLOHH_03410 0.33 -0.2 600,764 + NOLOHH_03410 0.33 -1.1 600,771 - NOLOHH_03410 0.34 -0.3 600,782 - NOLOHH_03410 0.35 +0.4 600,816 - NOLOHH_03410 0.39 +0.2 600,825 + NOLOHH_03410 0.40 +0.8 600,826 - NOLOHH_03410 0.40 +2.6 600,831 + NOLOHH_03410 0.40 +1.6 600,842 + NOLOHH_03410 0.42 -0.0 600,994 - NOLOHH_03410 0.58 +0.3 600,994 - NOLOHH_03410 0.58 -0.6 601,015 - NOLOHH_03410 0.60 +0.2 601,015 - NOLOHH_03410 0.60 -0.9 601,027 - NOLOHH_03410 0.61 -0.8 601,027 - NOLOHH_03410 0.61 +0.2 601,044 - NOLOHH_03410 0.63 +0.7 601,092 - NOLOHH_03410 0.68 -0.3 601,092 - NOLOHH_03410 0.68 +0.5 601,159 - NOLOHH_03410 0.75 +0.2 601,162 + NOLOHH_03410 0.75 -0.8 601,163 - NOLOHH_03410 0.75 -0.8 601,163 - NOLOHH_03410 0.75 +0.4 601,163 - NOLOHH_03410 0.75 -0.5 601,251 + NOLOHH_03410 0.84 -0.5 601,251 + NOLOHH_03410 0.84 -0.5 601,251 + NOLOHH_03410 0.84 +1.8 601,252 - NOLOHH_03410 0.85 -1.0 601,256 + NOLOHH_03410 0.85 +0.4 601,320 - +0.1
Or see this region's nucleotide sequence