Strain Fitness in Escherichia coli ECOR27 around NOLOHH_03315

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntileS and ribF are separated by 42 nucleotidesribF and rpsT are separated by 328 nucleotides NOLOHH_03310: ileS - isoleucine--tRNA ligase, at 582,481 to 585,297 ileS NOLOHH_03315: ribF - bifunctional riboflavin kinase/FAD synthetase, at 585,340 to 586,281 ribF NOLOHH_03320: rpsT - 30S ribosomal protein S20, at 586,610 to 586,873 rpsT Position (kb) 585 586 587Strain fitness (log2 ratio) -1 0 1at 586.316 kb on - strandat 586.316 kb on - strandat 586.323 kb on - strandat 586.323 kb on - strandat 586.323 kb on - strandat 586.468 kb on - strandat 586.487 kb on - strandat 586.519 kb on - strandat 586.519 kb on - strandat 586.924 kb on + strandat 587.012 kb on + strandat 587.013 kb on - strandat 587.013 kb on - strandat 587.016 kb on - strandat 587.035 kb on + strandat 587.078 kb on - strandat 587.180 kb on - strandat 587.227 kb on - strandat 587.227 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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586,316 - -0.0
586,316 - +0.0
586,323 - -0.1
586,323 - +0.1
586,323 - +0.6
586,468 - +0.5
586,487 - +0.5
586,519 - +0.2
586,519 - +0.2
586,924 + -0.4
587,012 + -1.1
587,013 - +1.4
587,013 - -0.1
587,016 - +0.5
587,035 + +0.3
587,078 - +0.5
587,180 - +1.4
587,227 - +0.5
587,227 - +0.5

Or see this region's nucleotide sequence