Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pdxA and rsmA overlap by 4 nucleotides rsmA and apaG are separated by 2 nucleotides apaG and apaH are separated by 6 nucleotides apaH and NOLOHH_03195 are separated by 77 nucleotides
NOLOHH_03175: pdxA - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 554,307 to 555,296
pdxA
NOLOHH_03180: rsmA - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA, at 555,293 to 556,114
rsmA
NOLOHH_03185: apaG - Co2+/Mg2+ efflux protein ApaG, at 556,117 to 556,494
apaG
NOLOHH_03190: apaH - bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH, at 556,501 to 557,343
apaH
NOLOHH_03195: NOLOHH_03195 - Dihydrofolate reductase, at 557,421 to 558,011
_03195
Position (kb) 556
557 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 555.129 kb on + strand, within pdxA at 555.129 kb on + strand, within pdxA at 555.677 kb on + strand, within rsmA at 555.788 kb on + strand, within rsmA at 555.970 kb on + strand, within rsmA at 556.079 kb on + strand at 556.080 kb on - strand at 556.080 kb on - strand at 556.112 kb on + strand at 556.140 kb on + strand at 556.140 kb on + strand at 556.186 kb on - strand, within apaG at 556.195 kb on + strand, within apaG at 556.207 kb on + strand, within apaG at 556.207 kb on + strand, within apaG at 556.208 kb on - strand, within apaG at 556.208 kb on - strand, within apaG at 556.208 kb on - strand, within apaG at 556.209 kb on + strand, within apaG at 556.210 kb on - strand, within apaG at 556.335 kb on + strand, within apaG at 556.361 kb on - strand, within apaG at 556.361 kb on - strand, within apaG at 556.501 kb on - strand at 556.510 kb on + strand at 556.511 kb on - strand at 556.511 kb on - strand at 556.563 kb on + strand at 556.563 kb on + strand at 556.564 kb on - strand at 556.591 kb on - strand, within apaH at 556.651 kb on + strand, within apaH at 556.676 kb on + strand, within apaH at 556.676 kb on + strand, within apaH at 556.677 kb on - strand, within apaH at 556.677 kb on - strand, within apaH at 556.886 kb on + strand, within apaH at 556.916 kb on + strand, within apaH at 556.962 kb on + strand, within apaH at 556.963 kb on - strand, within apaH at 556.963 kb on - strand, within apaH at 556.966 kb on + strand, within apaH at 556.983 kb on + strand, within apaH at 556.983 kb on + strand, within apaH at 557.079 kb on + strand, within apaH at 557.084 kb on - strand, within apaH at 557.205 kb on + strand, within apaH at 557.217 kb on + strand, within apaH at 557.218 kb on - strand, within apaH at 557.218 kb on - strand, within apaH at 557.218 kb on - strand, within apaH at 557.218 kb on - strand, within apaH at 557.219 kb on + strand, within apaH at 557.219 kb on + strand, within apaH at 557.219 kb on + strand, within apaH at 557.219 kb on + strand, within apaH at 557.220 kb on - strand, within apaH at 557.220 kb on - strand, within apaH at 557.221 kb on + strand, within apaH at 557.221 kb on + strand, within apaH at 557.221 kb on + strand, within apaH at 557.222 kb on - strand, within apaH at 557.222 kb on - strand, within apaH at 557.222 kb on - strand, within apaH at 557.253 kb on + strand, within apaH at 557.254 kb on - strand, within apaH at 557.254 kb on - strand, within apaH at 557.287 kb on + strand at 557.288 kb on - strand at 557.342 kb on - strand at 557.357 kb on + strand at 557.357 kb on + strand at 557.357 kb on + strand at 557.358 kb on - strand at 557.358 kb on - strand at 557.358 kb on - strand at 557.358 kb on - strand at 557.399 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 555,129 + pdxA NOLOHH_03175 0.83 +0.3 555,129 + pdxA NOLOHH_03175 0.83 +0.5 555,677 + rsmA NOLOHH_03180 0.47 +0.5 555,788 + rsmA NOLOHH_03180 0.60 -0.5 555,970 + rsmA NOLOHH_03180 0.82 +0.5 556,079 + -0.5 556,080 - -1.1 556,080 - +1.5 556,112 + -0.4 556,140 + -1.0 556,140 + +0.1 556,186 - apaG NOLOHH_03185 0.18 +0.7 556,195 + apaG NOLOHH_03185 0.21 +0.1 556,207 + apaG NOLOHH_03185 0.24 +0.8 556,207 + apaG NOLOHH_03185 0.24 -0.7 556,208 - apaG NOLOHH_03185 0.24 -0.0 556,208 - apaG NOLOHH_03185 0.24 +0.7 556,208 - apaG NOLOHH_03185 0.24 +0.5 556,209 + apaG NOLOHH_03185 0.24 -0.6 556,210 - apaG NOLOHH_03185 0.25 -0.5 556,335 + apaG NOLOHH_03185 0.58 -1.5 556,361 - apaG NOLOHH_03185 0.65 +0.5 556,361 - apaG NOLOHH_03185 0.65 -0.5 556,501 - +0.5 556,510 + +0.5 556,511 - +0.5 556,511 - -0.5 556,563 + +0.5 556,563 + +0.5 556,564 - +0.5 556,591 - apaH NOLOHH_03190 0.11 -1.1 556,651 + apaH NOLOHH_03190 0.18 -1.8 556,676 + apaH NOLOHH_03190 0.21 -0.5 556,676 + apaH NOLOHH_03190 0.21 +0.5 556,677 - apaH NOLOHH_03190 0.21 -1.5 556,677 - apaH NOLOHH_03190 0.21 -0.8 556,886 + apaH NOLOHH_03190 0.46 -1.1 556,916 + apaH NOLOHH_03190 0.49 +0.5 556,962 + apaH NOLOHH_03190 0.55 +0.5 556,963 - apaH NOLOHH_03190 0.55 -1.1 556,963 - apaH NOLOHH_03190 0.55 -1.1 556,966 + apaH NOLOHH_03190 0.55 +1.5 556,983 + apaH NOLOHH_03190 0.57 -1.1 556,983 + apaH NOLOHH_03190 0.57 -0.5 557,079 + apaH NOLOHH_03190 0.69 +1.5 557,084 - apaH NOLOHH_03190 0.69 +1.5 557,205 + apaH NOLOHH_03190 0.84 -0.9 557,217 + apaH NOLOHH_03190 0.85 +1.1 557,218 - apaH NOLOHH_03190 0.85 -0.5 557,218 - apaH NOLOHH_03190 0.85 +1.5 557,218 - apaH NOLOHH_03190 0.85 -0.5 557,218 - apaH NOLOHH_03190 0.85 -0.5 557,219 + apaH NOLOHH_03190 0.85 -1.1 557,219 + apaH NOLOHH_03190 0.85 -1.7 557,219 + apaH NOLOHH_03190 0.85 -1.1 557,219 + apaH NOLOHH_03190 0.85 +1.1 557,220 - apaH NOLOHH_03190 0.85 +0.5 557,220 - apaH NOLOHH_03190 0.85 -0.5 557,221 + apaH NOLOHH_03190 0.85 -0.5 557,221 + apaH NOLOHH_03190 0.85 -0.5 557,221 + apaH NOLOHH_03190 0.85 -0.5 557,222 - apaH NOLOHH_03190 0.86 +0.5 557,222 - apaH NOLOHH_03190 0.86 -1.5 557,222 - apaH NOLOHH_03190 0.86 -0.5 557,253 + apaH NOLOHH_03190 0.89 -1.5 557,254 - apaH NOLOHH_03190 0.89 +0.5 557,254 - apaH NOLOHH_03190 0.89 -1.1 557,287 + +0.7 557,288 - +0.2 557,342 - +3.3 557,357 + +1.7 557,357 + +0.2 557,357 + -0.6 557,358 - +0.7 557,358 - -0.4 557,358 - -0.3 557,358 - +0.1 557,399 + -0.2
Or see this region's nucleotide sequence