Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt surA and pdxA overlap by 1 nucleotides pdxA and rsmA overlap by 4 nucleotides rsmA and apaG are separated by 2 nucleotides
NOLOHH_03170: surA - peptidylprolyl isomerase SurA, at 553,021 to 554,307
surA
NOLOHH_03175: pdxA - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 554,307 to 555,296
pdxA
NOLOHH_03180: rsmA - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA, at 555,293 to 556,114
rsmA
NOLOHH_03185: apaG - Co2+/Mg2+ efflux protein ApaG, at 556,117 to 556,494
apaG
Position (kb) 554
555
556 Strain fitness (log2 ratio) -1
0
1
2 at 553.323 kb on + strand, within surA at 553.393 kb on + strand, within surA at 553.393 kb on + strand, within surA at 553.402 kb on + strand, within surA at 553.402 kb on + strand, within surA at 553.402 kb on + strand, within surA at 553.403 kb on - strand, within surA at 553.431 kb on + strand, within surA at 553.431 kb on + strand, within surA at 553.431 kb on + strand, within surA at 553.660 kb on - strand, within surA at 553.857 kb on + strand, within surA at 553.857 kb on + strand, within surA at 553.971 kb on + strand, within surA at 554.026 kb on - strand, within surA at 554.062 kb on - strand, within surA at 554.284 kb on + strand at 554.285 kb on - strand at 554.289 kb on + strand at 554.305 kb on + strand at 554.305 kb on + strand at 554.305 kb on + strand at 554.306 kb on - strand at 554.306 kb on - strand at 554.306 kb on - strand at 554.368 kb on + strand at 554.368 kb on + strand at 554.368 kb on + strand at 554.369 kb on - strand at 554.369 kb on - strand at 554.514 kb on - strand, within pdxA at 554.531 kb on - strand, within pdxA at 554.592 kb on + strand, within pdxA at 554.592 kb on + strand, within pdxA at 554.593 kb on - strand, within pdxA at 554.593 kb on - strand, within pdxA at 554.593 kb on - strand, within pdxA at 554.672 kb on + strand, within pdxA at 554.673 kb on - strand, within pdxA at 554.864 kb on + strand, within pdxA at 554.865 kb on - strand, within pdxA at 554.985 kb on - strand, within pdxA at 555.066 kb on + strand, within pdxA at 555.067 kb on - strand, within pdxA at 555.100 kb on - strand, within pdxA at 555.129 kb on + strand, within pdxA at 555.129 kb on + strand, within pdxA at 555.677 kb on + strand, within rsmA at 555.788 kb on + strand, within rsmA at 555.970 kb on + strand, within rsmA at 556.079 kb on + strand at 556.080 kb on - strand at 556.080 kb on - strand at 556.112 kb on + strand at 556.140 kb on + strand at 556.140 kb on + strand at 556.186 kb on - strand, within apaG at 556.195 kb on + strand, within apaG at 556.207 kb on + strand, within apaG at 556.207 kb on + strand, within apaG at 556.208 kb on - strand, within apaG at 556.208 kb on - strand, within apaG at 556.208 kb on - strand, within apaG at 556.209 kb on + strand, within apaG at 556.210 kb on - strand, within apaG
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 553,323 + surA NOLOHH_03170 0.23 -0.1 553,393 + surA NOLOHH_03170 0.29 +1.5 553,393 + surA NOLOHH_03170 0.29 +0.5 553,402 + surA NOLOHH_03170 0.30 -1.5 553,402 + surA NOLOHH_03170 0.30 -0.5 553,402 + surA NOLOHH_03170 0.30 +0.2 553,403 - surA NOLOHH_03170 0.30 -0.5 553,431 + surA NOLOHH_03170 0.32 -0.5 553,431 + surA NOLOHH_03170 0.32 +0.5 553,431 + surA NOLOHH_03170 0.32 +0.5 553,660 - surA NOLOHH_03170 0.50 -1.1 553,857 + surA NOLOHH_03170 0.65 -1.5 553,857 + surA NOLOHH_03170 0.65 -1.5 553,971 + surA NOLOHH_03170 0.74 -0.1 554,026 - surA NOLOHH_03170 0.78 +0.5 554,062 - surA NOLOHH_03170 0.81 -1.1 554,284 + -1.1 554,285 - +0.5 554,289 + -0.6 554,305 + +0.0 554,305 + -0.3 554,305 + -1.3 554,306 - -0.4 554,306 - -1.4 554,306 - +1.0 554,368 + +0.8 554,368 + +2.2 554,368 + -1.7 554,369 - +2.1 554,369 - +0.9 554,514 - pdxA NOLOHH_03175 0.21 +0.0 554,531 - pdxA NOLOHH_03175 0.23 -0.8 554,592 + pdxA NOLOHH_03175 0.29 +0.7 554,592 + pdxA NOLOHH_03175 0.29 +0.1 554,593 - pdxA NOLOHH_03175 0.29 +0.1 554,593 - pdxA NOLOHH_03175 0.29 +0.8 554,593 - pdxA NOLOHH_03175 0.29 -0.0 554,672 + pdxA NOLOHH_03175 0.37 +1.3 554,673 - pdxA NOLOHH_03175 0.37 -0.3 554,864 + pdxA NOLOHH_03175 0.56 +0.2 554,865 - pdxA NOLOHH_03175 0.56 -1.2 554,985 - pdxA NOLOHH_03175 0.68 +0.2 555,066 + pdxA NOLOHH_03175 0.77 +0.4 555,067 - pdxA NOLOHH_03175 0.77 -0.0 555,100 - pdxA NOLOHH_03175 0.80 -0.7 555,129 + pdxA NOLOHH_03175 0.83 +0.3 555,129 + pdxA NOLOHH_03175 0.83 +0.5 555,677 + rsmA NOLOHH_03180 0.47 +0.5 555,788 + rsmA NOLOHH_03180 0.60 -0.5 555,970 + rsmA NOLOHH_03180 0.82 +0.5 556,079 + -0.5 556,080 - -1.1 556,080 - +1.5 556,112 + -0.4 556,140 + -1.0 556,140 + +0.1 556,186 - apaG NOLOHH_03185 0.18 +0.7 556,195 + apaG NOLOHH_03185 0.21 +0.1 556,207 + apaG NOLOHH_03185 0.24 +0.8 556,207 + apaG NOLOHH_03185 0.24 -0.7 556,208 - apaG NOLOHH_03185 0.24 -0.0 556,208 - apaG NOLOHH_03185 0.24 +0.7 556,208 - apaG NOLOHH_03185 0.24 +0.5 556,209 + apaG NOLOHH_03185 0.24 -0.6 556,210 - apaG NOLOHH_03185 0.25 -0.5
Or see this region's nucleotide sequence