Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lptD and surA are separated by 52 nucleotides surA and pdxA overlap by 1 nucleotides pdxA and rsmA overlap by 4 nucleotides
NOLOHH_03165: lptD - LPS assembly protein LptD, at 550,614 to 552,968
lptD
NOLOHH_03170: surA - peptidylprolyl isomerase SurA, at 553,021 to 554,307
surA
NOLOHH_03175: pdxA - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 554,307 to 555,296
pdxA
NOLOHH_03180: rsmA - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA, at 555,293 to 556,114
rsmA
Position (kb) 553
554
555 Strain fitness (log2 ratio) -2
-1
0
1
2 at 552.906 kb on + strand at 552.906 kb on + strand at 552.987 kb on - strand at 552.987 kb on - strand at 553.020 kb on + strand at 553.021 kb on - strand at 553.323 kb on + strand, within surA at 553.393 kb on + strand, within surA at 553.393 kb on + strand, within surA at 553.402 kb on + strand, within surA at 553.402 kb on + strand, within surA at 553.402 kb on + strand, within surA at 553.403 kb on - strand, within surA at 553.431 kb on + strand, within surA at 553.431 kb on + strand, within surA at 553.431 kb on + strand, within surA at 553.660 kb on - strand, within surA at 553.857 kb on + strand, within surA at 553.857 kb on + strand, within surA at 553.971 kb on + strand, within surA at 554.026 kb on - strand, within surA at 554.062 kb on - strand, within surA at 554.284 kb on + strand at 554.285 kb on - strand at 554.289 kb on + strand at 554.305 kb on + strand at 554.305 kb on + strand at 554.305 kb on + strand at 554.306 kb on - strand at 554.306 kb on - strand at 554.306 kb on - strand at 554.368 kb on + strand at 554.368 kb on + strand at 554.368 kb on + strand at 554.369 kb on - strand at 554.369 kb on - strand at 554.514 kb on - strand, within pdxA at 554.531 kb on - strand, within pdxA at 554.592 kb on + strand, within pdxA at 554.592 kb on + strand, within pdxA at 554.593 kb on - strand, within pdxA at 554.593 kb on - strand, within pdxA at 554.593 kb on - strand, within pdxA at 554.672 kb on + strand, within pdxA at 554.673 kb on - strand, within pdxA at 554.864 kb on + strand, within pdxA at 554.865 kb on - strand, within pdxA at 554.985 kb on - strand, within pdxA at 555.066 kb on + strand, within pdxA at 555.067 kb on - strand, within pdxA at 555.100 kb on - strand, within pdxA at 555.129 kb on + strand, within pdxA at 555.129 kb on + strand, within pdxA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 552,906 + +2.1 552,906 + -1.8 552,987 - -0.5 552,987 - -0.1 553,020 + +0.5 553,021 - +0.5 553,323 + surA NOLOHH_03170 0.23 -0.1 553,393 + surA NOLOHH_03170 0.29 +1.5 553,393 + surA NOLOHH_03170 0.29 +0.5 553,402 + surA NOLOHH_03170 0.30 -1.5 553,402 + surA NOLOHH_03170 0.30 -0.5 553,402 + surA NOLOHH_03170 0.30 +0.2 553,403 - surA NOLOHH_03170 0.30 -0.5 553,431 + surA NOLOHH_03170 0.32 -0.5 553,431 + surA NOLOHH_03170 0.32 +0.5 553,431 + surA NOLOHH_03170 0.32 +0.5 553,660 - surA NOLOHH_03170 0.50 -1.1 553,857 + surA NOLOHH_03170 0.65 -1.5 553,857 + surA NOLOHH_03170 0.65 -1.5 553,971 + surA NOLOHH_03170 0.74 -0.1 554,026 - surA NOLOHH_03170 0.78 +0.5 554,062 - surA NOLOHH_03170 0.81 -1.1 554,284 + -1.1 554,285 - +0.5 554,289 + -0.6 554,305 + +0.0 554,305 + -0.3 554,305 + -1.3 554,306 - -0.4 554,306 - -1.4 554,306 - +1.0 554,368 + +0.8 554,368 + +2.2 554,368 + -1.7 554,369 - +2.1 554,369 - +0.9 554,514 - pdxA NOLOHH_03175 0.21 +0.0 554,531 - pdxA NOLOHH_03175 0.23 -0.8 554,592 + pdxA NOLOHH_03175 0.29 +0.7 554,592 + pdxA NOLOHH_03175 0.29 +0.1 554,593 - pdxA NOLOHH_03175 0.29 +0.1 554,593 - pdxA NOLOHH_03175 0.29 +0.8 554,593 - pdxA NOLOHH_03175 0.29 -0.0 554,672 + pdxA NOLOHH_03175 0.37 +1.3 554,673 - pdxA NOLOHH_03175 0.37 -0.3 554,864 + pdxA NOLOHH_03175 0.56 +0.2 554,865 - pdxA NOLOHH_03175 0.56 -1.2 554,985 - pdxA NOLOHH_03175 0.68 +0.2 555,066 + pdxA NOLOHH_03175 0.77 +0.4 555,067 - pdxA NOLOHH_03175 0.77 -0.0 555,100 - pdxA NOLOHH_03175 0.80 -0.7 555,129 + pdxA NOLOHH_03175 0.83 +0.3 555,129 + pdxA NOLOHH_03175 0.83 +0.5
Or see this region's nucleotide sequence