Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hofC and guaC are separated by 34 nucleotides guaC and yacM are separated by 155 nucleotides yacM and coaE are separated by 24 nucleotides coaE and zapD overlap by 1 nucleotides
NOLOHH_02890: hofC - protein transport protein HofC, at 493,622 to 494,824
hofC
NOLOHH_02895: guaC - GMP reductase, at 494,859 to 495,902
guaC
NOLOHH_02900: yacM - Protein YacM, at 496,058 to 496,102
yacM
NOLOHH_02905: coaE - dephospho-CoA kinase, at 496,127 to 496,747
coaE
NOLOHH_02910: zapD - cell division protein ZapD, at 496,747 to 497,490
zapD
Position (kb) 494
495
496 Strain fitness (log2 ratio) -2
-1
0
1
2 at 493.962 kb on + strand, within hofC at 493.963 kb on - strand, within hofC at 493.965 kb on + strand, within hofC at 493.981 kb on - strand, within hofC at 493.994 kb on + strand, within hofC at 493.994 kb on + strand, within hofC at 493.995 kb on - strand, within hofC at 493.995 kb on - strand, within hofC at 494.109 kb on + strand, within hofC at 494.109 kb on + strand, within hofC at 494.195 kb on + strand, within hofC at 494.195 kb on + strand, within hofC at 494.195 kb on + strand, within hofC at 494.195 kb on + strand, within hofC at 494.195 kb on + strand, within hofC at 494.195 kb on + strand, within hofC at 494.195 kb on + strand, within hofC at 494.195 kb on + strand, within hofC at 494.196 kb on - strand, within hofC at 494.196 kb on - strand, within hofC at 494.258 kb on - strand, within hofC at 494.314 kb on + strand, within hofC at 494.344 kb on + strand, within hofC at 494.345 kb on - strand, within hofC at 494.346 kb on + strand, within hofC at 494.346 kb on + strand, within hofC at 494.347 kb on - strand, within hofC at 494.368 kb on - strand, within hofC at 494.368 kb on - strand, within hofC at 494.380 kb on + strand, within hofC at 494.455 kb on + strand, within hofC at 494.472 kb on + strand, within hofC at 494.472 kb on + strand, within hofC at 494.539 kb on + strand, within hofC at 494.611 kb on - strand, within hofC at 494.652 kb on + strand, within hofC at 494.652 kb on + strand, within hofC at 494.653 kb on - strand, within hofC at 494.715 kb on + strand at 494.777 kb on + strand at 494.777 kb on + strand at 494.778 kb on - strand at 494.860 kb on + strand at 494.861 kb on - strand at 494.861 kb on - strand at 494.861 kb on - strand at 494.904 kb on - strand at 494.950 kb on + strand at 494.950 kb on + strand at 494.950 kb on + strand at 494.950 kb on + strand at 494.950 kb on + strand at 494.950 kb on + strand at 494.950 kb on + strand at 494.950 kb on + strand at 494.951 kb on - strand at 494.951 kb on - strand at 494.951 kb on - strand at 494.951 kb on - strand at 494.951 kb on - strand at 494.954 kb on + strand at 494.954 kb on + strand at 494.954 kb on + strand at 494.955 kb on - strand at 494.955 kb on - strand at 494.955 kb on - strand at 494.955 kb on - strand at 494.955 kb on - strand at 495.033 kb on - strand, within guaC at 495.103 kb on + strand, within guaC at 495.345 kb on - strand, within guaC at 495.375 kb on - strand, within guaC at 495.426 kb on + strand, within guaC at 495.426 kb on + strand, within guaC at 495.427 kb on - strand, within guaC at 495.427 kb on - strand, within guaC at 495.427 kb on - strand, within guaC at 495.521 kb on + strand, within guaC at 495.521 kb on + strand, within guaC at 495.521 kb on + strand, within guaC at 495.521 kb on + strand, within guaC at 495.522 kb on - strand, within guaC at 495.522 kb on - strand, within guaC at 495.522 kb on - strand, within guaC at 495.590 kb on + strand, within guaC at 495.641 kb on + strand, within guaC at 495.667 kb on + strand, within guaC at 495.667 kb on + strand, within guaC at 495.667 kb on + strand, within guaC at 495.667 kb on + strand, within guaC at 495.668 kb on - strand, within guaC at 495.668 kb on - strand, within guaC at 495.668 kb on - strand, within guaC at 495.675 kb on - strand, within guaC at 495.728 kb on + strand, within guaC at 495.729 kb on - strand, within guaC at 495.733 kb on - strand, within guaC at 495.733 kb on - strand, within guaC at 495.733 kb on - strand, within guaC at 495.733 kb on - strand, within guaC at 495.733 kb on - strand, within guaC at 495.733 kb on - strand, within guaC at 495.744 kb on - strand, within guaC at 495.834 kb on - strand at 495.896 kb on + strand at 495.927 kb on + strand at 495.927 kb on + strand at 495.929 kb on + strand at 495.929 kb on + strand at 495.935 kb on + strand at 495.964 kb on - strand at 496.008 kb on + strand at 496.013 kb on + strand at 496.137 kb on + strand at 496.137 kb on + strand at 496.137 kb on + strand at 496.137 kb on + strand at 496.137 kb on + strand at 496.138 kb on - strand at 496.138 kb on - strand at 496.138 kb on - strand at 496.745 kb on + strand at 496.746 kb on - strand at 496.778 kb on + strand at 496.779 kb on - strand at 496.794 kb on + strand at 496.794 kb on + strand at 496.794 kb on + strand at 496.794 kb on + strand at 496.795 kb on - strand at 496.895 kb on + strand, within zapD at 496.895 kb on + strand, within zapD at 496.895 kb on + strand, within zapD at 496.896 kb on - strand, within zapD
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 493,962 + hofC NOLOHH_02890 0.28 -0.4 493,963 - hofC NOLOHH_02890 0.28 +0.4 493,965 + hofC NOLOHH_02890 0.29 -0.5 493,981 - hofC NOLOHH_02890 0.30 +1.0 493,994 + hofC NOLOHH_02890 0.31 +0.3 493,994 + hofC NOLOHH_02890 0.31 +0.9 493,995 - hofC NOLOHH_02890 0.31 +0.7 493,995 - hofC NOLOHH_02890 0.31 +0.7 494,109 + hofC NOLOHH_02890 0.40 -0.5 494,109 + hofC NOLOHH_02890 0.40 -0.8 494,195 + hofC NOLOHH_02890 0.48 -0.7 494,195 + hofC NOLOHH_02890 0.48 -0.7 494,195 + hofC NOLOHH_02890 0.48 +1.1 494,195 + hofC NOLOHH_02890 0.48 -0.9 494,195 + hofC NOLOHH_02890 0.48 +0.2 494,195 + hofC NOLOHH_02890 0.48 +0.3 494,195 + hofC NOLOHH_02890 0.48 +0.9 494,195 + hofC NOLOHH_02890 0.48 -0.5 494,196 - hofC NOLOHH_02890 0.48 -1.8 494,196 - hofC NOLOHH_02890 0.48 +0.6 494,258 - hofC NOLOHH_02890 0.53 +0.1 494,314 + hofC NOLOHH_02890 0.58 +0.7 494,344 + hofC NOLOHH_02890 0.60 +0.2 494,345 - hofC NOLOHH_02890 0.60 -0.4 494,346 + hofC NOLOHH_02890 0.60 +0.5 494,346 + hofC NOLOHH_02890 0.60 +1.0 494,347 - hofC NOLOHH_02890 0.60 +0.1 494,368 - hofC NOLOHH_02890 0.62 -0.3 494,368 - hofC NOLOHH_02890 0.62 -0.5 494,380 + hofC NOLOHH_02890 0.63 -0.5 494,455 + hofC NOLOHH_02890 0.69 +0.4 494,472 + hofC NOLOHH_02890 0.71 +0.5 494,472 + hofC NOLOHH_02890 0.71 -0.4 494,539 + hofC NOLOHH_02890 0.76 +1.0 494,611 - hofC NOLOHH_02890 0.82 +0.7 494,652 + hofC NOLOHH_02890 0.86 -0.5 494,652 + hofC NOLOHH_02890 0.86 +0.9 494,653 - hofC NOLOHH_02890 0.86 +0.8 494,715 + -0.6 494,777 + -0.5 494,777 + -2.0 494,778 - -0.9 494,860 + +0.1 494,861 - -0.7 494,861 - +2.2 494,861 - +1.1 494,904 - -0.3 494,950 + -1.8 494,950 + -0.3 494,950 + -0.8 494,950 + -0.5 494,950 + -0.7 494,950 + -0.6 494,950 + +1.1 494,950 + -0.1 494,951 - -0.2 494,951 - +0.4 494,951 - +1.5 494,951 - +0.5 494,951 - -0.7 494,954 + +0.3 494,954 + -1.1 494,954 + -1.5 494,955 - -0.5 494,955 - +1.3 494,955 - +1.9 494,955 - +0.5 494,955 - +1.6 495,033 - guaC NOLOHH_02895 0.17 +0.5 495,103 + guaC NOLOHH_02895 0.23 +0.7 495,345 - guaC NOLOHH_02895 0.47 -1.8 495,375 - guaC NOLOHH_02895 0.49 -1.1 495,426 + guaC NOLOHH_02895 0.54 +0.2 495,426 + guaC NOLOHH_02895 0.54 +0.1 495,427 - guaC NOLOHH_02895 0.54 +0.8 495,427 - guaC NOLOHH_02895 0.54 -0.3 495,427 - guaC NOLOHH_02895 0.54 +0.5 495,521 + guaC NOLOHH_02895 0.63 -1.8 495,521 + guaC NOLOHH_02895 0.63 -1.2 495,521 + guaC NOLOHH_02895 0.63 +0.5 495,521 + guaC NOLOHH_02895 0.63 +0.6 495,522 - guaC NOLOHH_02895 0.64 +1.4 495,522 - guaC NOLOHH_02895 0.64 -0.5 495,522 - guaC NOLOHH_02895 0.64 +1.1 495,590 + guaC NOLOHH_02895 0.70 +0.3 495,641 + guaC NOLOHH_02895 0.75 -0.7 495,667 + guaC NOLOHH_02895 0.77 +0.5 495,667 + guaC NOLOHH_02895 0.77 +0.1 495,667 + guaC NOLOHH_02895 0.77 -0.5 495,667 + guaC NOLOHH_02895 0.77 +0.3 495,668 - guaC NOLOHH_02895 0.77 -1.9 495,668 - guaC NOLOHH_02895 0.77 -0.8 495,668 - guaC NOLOHH_02895 0.77 -0.3 495,675 - guaC NOLOHH_02895 0.78 -0.8 495,728 + guaC NOLOHH_02895 0.83 +0.7 495,729 - guaC NOLOHH_02895 0.83 -0.7 495,733 - guaC NOLOHH_02895 0.84 +0.5 495,733 - guaC NOLOHH_02895 0.84 +0.8 495,733 - guaC NOLOHH_02895 0.84 -1.2 495,733 - guaC NOLOHH_02895 0.84 +1.2 495,733 - guaC NOLOHH_02895 0.84 +0.2 495,733 - guaC NOLOHH_02895 0.84 -1.7 495,744 - guaC NOLOHH_02895 0.85 +1.3 495,834 - +0.1 495,896 + -1.2 495,927 + -0.7 495,927 + +0.6 495,929 + -0.1 495,929 + -0.2 495,935 + -0.5 495,964 - +1.5 496,008 + -0.8 496,013 + -0.7 496,137 + -0.5 496,137 + -0.3 496,137 + -0.9 496,137 + +0.0 496,137 + -0.2 496,138 - -1.1 496,138 - -1.5 496,138 - -1.1 496,745 + +0.8 496,746 - +0.5 496,778 + -0.9 496,779 - -0.5 496,794 + -0.1 496,794 + +1.6 496,794 + -0.2 496,794 + -1.8 496,795 - -1.1 496,895 + zapD NOLOHH_02910 0.20 -0.5 496,895 + zapD NOLOHH_02910 0.20 -1.1 496,895 + zapD NOLOHH_02910 0.20 -0.6 496,896 - zapD NOLOHH_02910 0.20 +0.5
Or see this region's nucleotide sequence