Strain Fitness in Escherichia coli ECOR27 around NOLOHH_02845

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaceF and aceE are separated by 14 nucleotidesaceE and pdhR are separated by 160 nucleotides NOLOHH_02840: aceF - pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase, at 481,759 to 483,651 aceF NOLOHH_02845: aceE - pyruvate dehydrogenase (acetyl-transferring), homodimeric type, at 483,666 to 486,329 aceE NOLOHH_02855: pdhR - pyruvate dehydrogenase complex transcriptional repressor PdhR, at 486,490 to 487,254 pdhR Position (kb) 483 484 485 486 487Strain fitness (log2 ratio) -1 0 1 2at 483.233 kb on - strand, within aceFat 483.668 kb on - strandat 483.788 kb on - strandat 483.887 kb on - strandat 483.887 kb on - strandat 483.918 kb on - strandat 484.058 kb on + strand, within aceEat 484.059 kb on - strand, within aceEat 484.190 kb on + strand, within aceEat 484.265 kb on - strand, within aceEat 484.362 kb on - strand, within aceEat 484.534 kb on + strand, within aceEat 484.534 kb on + strand, within aceEat 484.534 kb on + strand, within aceEat 484.661 kb on - strand, within aceEat 484.661 kb on - strand, within aceEat 484.663 kb on + strand, within aceEat 484.816 kb on - strand, within aceEat 484.847 kb on + strand, within aceEat 484.848 kb on - strand, within aceEat 484.848 kb on - strand, within aceEat 484.982 kb on + strand, within aceEat 485.159 kb on + strand, within aceEat 485.219 kb on - strand, within aceEat 485.977 kb on + strand, within aceEat 486.628 kb on - strand, within pdhRat 486.641 kb on - strand, within pdhRat 486.641 kb on - strand, within pdhRat 486.641 kb on - strand, within pdhRat 486.658 kb on - strand, within pdhRat 486.689 kb on + strand, within pdhRat 486.739 kb on - strand, within pdhRat 486.739 kb on - strand, within pdhRat 486.739 kb on - strand, within pdhRat 486.739 kb on - strand, within pdhRat 486.898 kb on - strand, within pdhRat 486.898 kb on - strand, within pdhRat 486.901 kb on - strand, within pdhRat 486.963 kb on - strand, within pdhRat 486.963 kb on - strand, within pdhRat 486.963 kb on - strand, within pdhRat 486.963 kb on - strand, within pdhRat 486.963 kb on - strand, within pdhR

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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483,233 - aceF NOLOHH_02840 0.78 +0.5
483,668 - -0.5
483,788 - +0.5
483,887 - +0.5
483,887 - -0.5
483,918 - +0.5
484,058 + aceE NOLOHH_02845 0.15 +0.5
484,059 - aceE NOLOHH_02845 0.15 +0.5
484,190 + aceE NOLOHH_02845 0.20 +0.5
484,265 - aceE NOLOHH_02845 0.22 +0.5
484,362 - aceE NOLOHH_02845 0.26 +0.5
484,534 + aceE NOLOHH_02845 0.33 +0.5
484,534 + aceE NOLOHH_02845 0.33 +0.5
484,534 + aceE NOLOHH_02845 0.33 +0.5
484,661 - aceE NOLOHH_02845 0.37 -0.5
484,661 - aceE NOLOHH_02845 0.37 +0.5
484,663 + aceE NOLOHH_02845 0.37 -0.5
484,816 - aceE NOLOHH_02845 0.43 +0.5
484,847 + aceE NOLOHH_02845 0.44 -0.5
484,848 - aceE NOLOHH_02845 0.44 -0.5
484,848 - aceE NOLOHH_02845 0.44 +0.5
484,982 + aceE NOLOHH_02845 0.49 +0.5
485,159 + aceE NOLOHH_02845 0.56 +0.5
485,219 - aceE NOLOHH_02845 0.58 -0.5
485,977 + aceE NOLOHH_02845 0.87 +0.5
486,628 - pdhR NOLOHH_02855 0.18 -0.5
486,641 - pdhR NOLOHH_02855 0.20 +0.5
486,641 - pdhR NOLOHH_02855 0.20 +0.3
486,641 - pdhR NOLOHH_02855 0.20 -0.2
486,658 - pdhR NOLOHH_02855 0.22 +0.5
486,689 + pdhR NOLOHH_02855 0.26 -0.5
486,739 - pdhR NOLOHH_02855 0.33 +0.3
486,739 - pdhR NOLOHH_02855 0.33 -0.5
486,739 - pdhR NOLOHH_02855 0.33 +2.1
486,739 - pdhR NOLOHH_02855 0.33 +0.1
486,898 - pdhR NOLOHH_02855 0.53 +2.3
486,898 - pdhR NOLOHH_02855 0.53 +1.6
486,901 - pdhR NOLOHH_02855 0.54 +0.5
486,963 - pdhR NOLOHH_02855 0.62 +1.5
486,963 - pdhR NOLOHH_02855 0.62 -1.0
486,963 - pdhR NOLOHH_02855 0.62 -0.0
486,963 - pdhR NOLOHH_02855 0.62 +0.1
486,963 - pdhR NOLOHH_02855 0.62 +0.1

Or see this region's nucleotide sequence