Strain Fitness in Escherichia coli ECOR27 around NOLOHH_02425

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntproS and yaeF are separated by 52 nucleotidesyaeF and NOLOHH_02430 are separated by 202 nucleotides NOLOHH_02420: proS - proline--tRNA ligase, at 390,382 to 392,100 proS NOLOHH_02425: yaeF - YaeF family permuted papain-like enzyme, at 392,153 to 392,977 yaeF NOLOHH_02430: NOLOHH_02430 - IS110-like element IS621 family transposase, at 393,180 to 394,160 _02430 Position (kb) 392 393Strain fitness (log2 ratio) -2 -1 0 1 2at 392.136 kb on + strandat 392.137 kb on - strandat 392.150 kb on - strandat 392.216 kb on - strandat 392.256 kb on + strand, within yaeFat 392.441 kb on + strand, within yaeFat 392.442 kb on - strand, within yaeFat 392.455 kb on + strand, within yaeFat 392.456 kb on - strand, within yaeFat 392.519 kb on - strand, within yaeFat 392.519 kb on - strand, within yaeFat 392.525 kb on - strand, within yaeFat 392.538 kb on + strand, within yaeFat 392.614 kb on + strand, within yaeFat 392.614 kb on + strand, within yaeFat 392.615 kb on - strand, within yaeFat 392.615 kb on - strand, within yaeFat 392.615 kb on - strand, within yaeFat 392.615 kb on - strand, within yaeFat 392.615 kb on - strand, within yaeFat 392.615 kb on - strand, within yaeFat 392.618 kb on + strand, within yaeFat 392.734 kb on - strand, within yaeFat 392.734 kb on - strand, within yaeFat 392.818 kb on + strand, within yaeFat 392.863 kb on + strand, within yaeFat 392.863 kb on + strand, within yaeFat 392.863 kb on + strand, within yaeFat 392.863 kb on + strand, within yaeFat 392.864 kb on - strand, within yaeFat 392.864 kb on - strand, within yaeFat 392.864 kb on - strand, within yaeFat 392.864 kb on - strand, within yaeFat 392.907 kb on + strandat 392.907 kb on + strandat 392.907 kb on + strandat 392.907 kb on + strandat 392.908 kb on - strandat 392.908 kb on - strandat 392.908 kb on - strandat 392.912 kb on + strandat 392.913 kb on - strandat 392.939 kb on + strandat 392.939 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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392,136 + +1.0
392,137 - +2.0
392,150 - +2.4
392,216 - +1.2
392,256 + yaeF NOLOHH_02425 0.12 -0.6
392,441 + yaeF NOLOHH_02425 0.35 -0.1
392,442 - yaeF NOLOHH_02425 0.35 +0.2
392,455 + yaeF NOLOHH_02425 0.37 -0.2
392,456 - yaeF NOLOHH_02425 0.37 -1.2
392,519 - yaeF NOLOHH_02425 0.44 -0.3
392,519 - yaeF NOLOHH_02425 0.44 -0.8
392,525 - yaeF NOLOHH_02425 0.45 +1.3
392,538 + yaeF NOLOHH_02425 0.47 +1.0
392,614 + yaeF NOLOHH_02425 0.56 -1.6
392,614 + yaeF NOLOHH_02425 0.56 -0.1
392,615 - yaeF NOLOHH_02425 0.56 -0.4
392,615 - yaeF NOLOHH_02425 0.56 +0.0
392,615 - yaeF NOLOHH_02425 0.56 +1.4
392,615 - yaeF NOLOHH_02425 0.56 +2.0
392,615 - yaeF NOLOHH_02425 0.56 +0.3
392,615 - yaeF NOLOHH_02425 0.56 -0.6
392,618 + yaeF NOLOHH_02425 0.56 -0.1
392,734 - yaeF NOLOHH_02425 0.70 +0.1
392,734 - yaeF NOLOHH_02425 0.70 -0.2
392,818 + yaeF NOLOHH_02425 0.81 +0.4
392,863 + yaeF NOLOHH_02425 0.86 -0.3
392,863 + yaeF NOLOHH_02425 0.86 +0.1
392,863 + yaeF NOLOHH_02425 0.86 +0.6
392,863 + yaeF NOLOHH_02425 0.86 -0.2
392,864 - yaeF NOLOHH_02425 0.86 +1.3
392,864 - yaeF NOLOHH_02425 0.86 -0.6
392,864 - yaeF NOLOHH_02425 0.86 -0.2
392,864 - yaeF NOLOHH_02425 0.86 -1.9
392,907 + -0.2
392,907 + -0.3
392,907 + +0.3
392,907 + -0.4
392,908 - -0.3
392,908 - +0.2
392,908 - +1.8
392,912 + +0.2
392,913 - -0.6
392,939 + -0.8
392,939 + -0.2

Or see this region's nucleotide sequence