Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rcsF and tsaA overlap by 4 nucleotides tsaA and proS are separated by 110 nucleotides proS and yaeF are separated by 52 nucleotides
NOLOHH_02410: rcsF - Rcs stress response system protein RcsF, at 389,163 to 389,567
rcsF
NOLOHH_02415: tsaA - tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO, at 389,564 to 390,271
tsaA
NOLOHH_02420: proS - proline--tRNA ligase, at 390,382 to 392,100
proS
NOLOHH_02425: yaeF - YaeF family permuted papain-like enzyme, at 392,153 to 392,977
yaeF
Position (kb) 390
391
392
393 Strain fitness (log2 ratio) -2
-1
0
1
2 at 389.429 kb on + strand, within rcsF at 389.429 kb on + strand, within rcsF at 389.476 kb on + strand, within rcsF at 389.476 kb on + strand, within rcsF at 389.483 kb on + strand, within rcsF at 389.483 kb on + strand, within rcsF at 389.530 kb on + strand at 389.530 kb on + strand at 389.530 kb on + strand at 389.530 kb on + strand at 389.530 kb on + strand at 389.530 kb on + strand at 389.530 kb on + strand at 389.530 kb on + strand at 389.530 kb on + strand at 389.530 kb on + strand at 389.535 kb on - strand at 389.649 kb on + strand, within tsaA at 389.688 kb on - strand, within tsaA at 389.688 kb on - strand, within tsaA at 389.688 kb on - strand, within tsaA at 389.688 kb on - strand, within tsaA at 389.842 kb on + strand, within tsaA at 389.866 kb on + strand, within tsaA at 389.975 kb on + strand, within tsaA at 390.017 kb on + strand, within tsaA at 390.017 kb on + strand, within tsaA at 390.017 kb on + strand, within tsaA at 390.132 kb on + strand, within tsaA at 390.132 kb on + strand, within tsaA at 390.133 kb on - strand, within tsaA at 390.163 kb on + strand, within tsaA at 390.164 kb on - strand, within tsaA at 390.188 kb on + strand, within tsaA at 390.188 kb on + strand, within tsaA at 390.189 kb on - strand, within tsaA at 390.269 kb on + strand at 390.315 kb on + strand at 392.136 kb on + strand at 392.137 kb on - strand at 392.150 kb on - strand at 392.216 kb on - strand at 392.256 kb on + strand, within yaeF at 392.441 kb on + strand, within yaeF at 392.442 kb on - strand, within yaeF at 392.455 kb on + strand, within yaeF at 392.456 kb on - strand, within yaeF at 392.519 kb on - strand, within yaeF at 392.519 kb on - strand, within yaeF at 392.525 kb on - strand, within yaeF at 392.538 kb on + strand, within yaeF at 392.614 kb on + strand, within yaeF at 392.614 kb on + strand, within yaeF at 392.615 kb on - strand, within yaeF at 392.615 kb on - strand, within yaeF at 392.615 kb on - strand, within yaeF at 392.615 kb on - strand, within yaeF at 392.615 kb on - strand, within yaeF at 392.615 kb on - strand, within yaeF at 392.618 kb on + strand, within yaeF at 392.734 kb on - strand, within yaeF at 392.734 kb on - strand, within yaeF at 392.818 kb on + strand, within yaeF at 392.863 kb on + strand, within yaeF at 392.863 kb on + strand, within yaeF at 392.863 kb on + strand, within yaeF at 392.863 kb on + strand, within yaeF at 392.864 kb on - strand, within yaeF at 392.864 kb on - strand, within yaeF at 392.864 kb on - strand, within yaeF at 392.864 kb on - strand, within yaeF at 392.907 kb on + strand at 392.907 kb on + strand at 392.907 kb on + strand at 392.907 kb on + strand at 392.908 kb on - strand at 392.908 kb on - strand at 392.908 kb on - strand at 392.912 kb on + strand at 392.913 kb on - strand at 392.939 kb on + strand at 392.939 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 389,429 + rcsF NOLOHH_02410 0.66 +0.3 389,429 + rcsF NOLOHH_02410 0.66 +0.8 389,476 + rcsF NOLOHH_02410 0.77 +0.0 389,476 + rcsF NOLOHH_02410 0.77 -0.0 389,483 + rcsF NOLOHH_02410 0.79 +0.1 389,483 + rcsF NOLOHH_02410 0.79 +0.9 389,530 + +0.7 389,530 + -0.6 389,530 + -1.6 389,530 + -1.2 389,530 + -0.6 389,530 + +1.0 389,530 + +0.4 389,530 + -0.7 389,530 + +0.2 389,530 + +0.7 389,535 - +0.2 389,649 + tsaA NOLOHH_02415 0.12 -1.2 389,688 - tsaA NOLOHH_02415 0.18 -1.9 389,688 - tsaA NOLOHH_02415 0.18 -0.4 389,688 - tsaA NOLOHH_02415 0.18 -0.7 389,688 - tsaA NOLOHH_02415 0.18 -0.5 389,842 + tsaA NOLOHH_02415 0.39 +0.4 389,866 + tsaA NOLOHH_02415 0.43 +0.1 389,975 + tsaA NOLOHH_02415 0.58 +0.4 390,017 + tsaA NOLOHH_02415 0.64 -2.4 390,017 + tsaA NOLOHH_02415 0.64 +0.7 390,017 + tsaA NOLOHH_02415 0.64 +0.4 390,132 + tsaA NOLOHH_02415 0.80 -0.2 390,132 + tsaA NOLOHH_02415 0.80 +1.4 390,133 - tsaA NOLOHH_02415 0.80 -0.7 390,163 + tsaA NOLOHH_02415 0.85 -0.2 390,164 - tsaA NOLOHH_02415 0.85 +0.1 390,188 + tsaA NOLOHH_02415 0.88 +0.2 390,188 + tsaA NOLOHH_02415 0.88 -0.6 390,189 - tsaA NOLOHH_02415 0.88 +0.4 390,269 + -0.6 390,315 + +0.4 392,136 + +1.0 392,137 - +2.0 392,150 - +2.4 392,216 - +1.2 392,256 + yaeF NOLOHH_02425 0.12 -0.6 392,441 + yaeF NOLOHH_02425 0.35 -0.1 392,442 - yaeF NOLOHH_02425 0.35 +0.2 392,455 + yaeF NOLOHH_02425 0.37 -0.2 392,456 - yaeF NOLOHH_02425 0.37 -1.2 392,519 - yaeF NOLOHH_02425 0.44 -0.3 392,519 - yaeF NOLOHH_02425 0.44 -0.8 392,525 - yaeF NOLOHH_02425 0.45 +1.3 392,538 + yaeF NOLOHH_02425 0.47 +1.0 392,614 + yaeF NOLOHH_02425 0.56 -1.6 392,614 + yaeF NOLOHH_02425 0.56 -0.1 392,615 - yaeF NOLOHH_02425 0.56 -0.4 392,615 - yaeF NOLOHH_02425 0.56 +0.0 392,615 - yaeF NOLOHH_02425 0.56 +1.4 392,615 - yaeF NOLOHH_02425 0.56 +2.0 392,615 - yaeF NOLOHH_02425 0.56 +0.3 392,615 - yaeF NOLOHH_02425 0.56 -0.6 392,618 + yaeF NOLOHH_02425 0.56 -0.1 392,734 - yaeF NOLOHH_02425 0.70 +0.1 392,734 - yaeF NOLOHH_02425 0.70 -0.2 392,818 + yaeF NOLOHH_02425 0.81 +0.4 392,863 + yaeF NOLOHH_02425 0.86 -0.3 392,863 + yaeF NOLOHH_02425 0.86 +0.1 392,863 + yaeF NOLOHH_02425 0.86 +0.6 392,863 + yaeF NOLOHH_02425 0.86 -0.2 392,864 - yaeF NOLOHH_02425 0.86 +1.3 392,864 - yaeF NOLOHH_02425 0.86 -0.6 392,864 - yaeF NOLOHH_02425 0.86 -0.2 392,864 - yaeF NOLOHH_02425 0.86 -1.9 392,907 + -0.2 392,907 + -0.3 392,907 + +0.3 392,907 + -0.4 392,908 - -0.3 392,908 - +0.2 392,908 - +1.8 392,912 + +0.2 392,913 - -0.6 392,939 + -0.8 392,939 + -0.2
Or see this region's nucleotide sequence