Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt paoA and paoB overlap by 4 nucleotides paoB and paoC overlap by 4 nucleotides
NOLOHH_02015: paoA - aldehyde dehydrogenase iron-sulfur subunit, at 310,860 to 311,549
paoA
NOLOHH_02020: paoB - aldehyde oxidoreductase FAD-binding subunit PaoB, at 311,546 to 312,502
paoB
NOLOHH_02025: paoC - aldehyde oxidoreductase molybdenum-binding subunit PaoC, at 312,499 to 314,697
paoC
Position (kb) 311
312
313 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 310.563 kb on - strand at 310.589 kb on - strand at 310.590 kb on + strand at 310.664 kb on + strand at 310.671 kb on - strand at 310.671 kb on - strand at 310.671 kb on - strand at 310.671 kb on - strand at 310.671 kb on - strand at 310.679 kb on - strand at 310.723 kb on - strand at 310.737 kb on + strand at 310.755 kb on - strand at 310.788 kb on + strand at 310.788 kb on + strand at 310.788 kb on + strand at 310.841 kb on - strand at 310.859 kb on + strand at 310.890 kb on - strand at 310.922 kb on - strand at 311.021 kb on + strand, within paoA at 311.021 kb on + strand, within paoA at 311.021 kb on + strand, within paoA at 311.022 kb on - strand, within paoA at 311.038 kb on + strand, within paoA at 311.039 kb on - strand, within paoA at 311.208 kb on - strand, within paoA at 311.282 kb on + strand, within paoA at 311.282 kb on + strand, within paoA at 311.282 kb on + strand, within paoA at 311.283 kb on - strand, within paoA at 311.283 kb on - strand, within paoA at 311.309 kb on + strand, within paoA at 311.378 kb on - strand, within paoA at 311.378 kb on - strand, within paoA at 311.465 kb on + strand, within paoA at 311.465 kb on + strand, within paoA at 311.465 kb on + strand, within paoA at 311.496 kb on + strand at 311.496 kb on + strand at 311.497 kb on - strand at 311.501 kb on + strand at 311.539 kb on + strand at 311.557 kb on + strand at 311.557 kb on + strand at 311.558 kb on - strand at 311.561 kb on + strand at 311.562 kb on - strand at 311.597 kb on - strand at 311.807 kb on + strand, within paoB at 311.853 kb on + strand, within paoB at 311.853 kb on + strand, within paoB at 311.854 kb on - strand, within paoB at 311.858 kb on - strand, within paoB at 311.879 kb on - strand, within paoB at 311.879 kb on - strand, within paoB at 311.936 kb on - strand, within paoB at 311.998 kb on - strand, within paoB at 312.003 kb on + strand, within paoB at 312.003 kb on + strand, within paoB at 312.004 kb on - strand, within paoB at 312.004 kb on - strand, within paoB at 312.019 kb on - strand, within paoB at 312.037 kb on + strand, within paoB at 312.125 kb on + strand, within paoB at 312.181 kb on + strand, within paoB at 312.223 kb on + strand, within paoB at 312.223 kb on + strand, within paoB at 312.224 kb on - strand, within paoB at 312.224 kb on - strand, within paoB at 312.224 kb on - strand, within paoB at 312.224 kb on - strand, within paoB at 312.224 kb on - strand, within paoB at 312.224 kb on - strand, within paoB at 312.224 kb on - strand, within paoB at 312.224 kb on - strand, within paoB at 312.224 kb on - strand, within paoB at 312.224 kb on - strand, within paoB at 312.224 kb on - strand, within paoB at 312.228 kb on - strand, within paoB at 312.255 kb on - strand, within paoB at 312.287 kb on - strand, within paoB at 312.328 kb on - strand, within paoB at 312.328 kb on - strand, within paoB at 312.334 kb on + strand, within paoB at 312.334 kb on + strand, within paoB at 312.334 kb on + strand, within paoB at 312.334 kb on + strand, within paoB at 312.335 kb on - strand, within paoB at 312.335 kb on - strand, within paoB at 312.335 kb on - strand, within paoB at 312.391 kb on - strand, within paoB at 312.391 kb on - strand, within paoB at 312.392 kb on + strand, within paoB at 312.393 kb on - strand, within paoB at 312.393 kb on - strand, within paoB at 312.439 kb on + strand at 312.439 kb on + strand at 312.652 kb on + strand at 312.652 kb on + strand at 312.652 kb on + strand at 312.652 kb on + strand at 312.653 kb on - strand at 312.653 kb on - strand at 312.654 kb on + strand at 312.655 kb on - strand at 312.729 kb on - strand, within paoC at 312.821 kb on - strand, within paoC at 312.821 kb on - strand, within paoC at 312.906 kb on + strand, within paoC at 312.910 kb on - strand, within paoC at 312.920 kb on - strand, within paoC at 313.032 kb on + strand, within paoC at 313.032 kb on + strand, within paoC at 313.036 kb on + strand, within paoC at 313.036 kb on + strand, within paoC at 313.036 kb on + strand, within paoC at 313.037 kb on - strand, within paoC at 313.059 kb on + strand, within paoC at 313.060 kb on - strand, within paoC at 313.060 kb on - strand, within paoC at 313.060 kb on - strand, within paoC at 313.104 kb on + strand, within paoC at 313.104 kb on + strand, within paoC at 313.104 kb on + strand, within paoC at 313.104 kb on + strand, within paoC at 313.105 kb on - strand, within paoC at 313.105 kb on - strand, within paoC at 313.105 kb on - strand, within paoC at 313.105 kb on - strand, within paoC at 313.105 kb on - strand, within paoC at 313.195 kb on - strand, within paoC at 313.197 kb on + strand, within paoC at 313.198 kb on - strand, within paoC at 313.198 kb on - strand, within paoC at 313.198 kb on - strand, within paoC at 313.207 kb on + strand, within paoC at 313.207 kb on + strand, within paoC at 313.208 kb on - strand, within paoC at 313.208 kb on - strand, within paoC at 313.320 kb on + strand, within paoC at 313.472 kb on + strand, within paoC at 313.472 kb on + strand, within paoC at 313.473 kb on - strand, within paoC
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 310,563 - +0.3 310,589 - -0.3 310,590 + -0.6 310,664 + +1.4 310,671 - -1.4 310,671 - -0.2 310,671 - +0.1 310,671 - -0.6 310,671 - +2.8 310,679 - -0.9 310,723 - -0.2 310,737 + +0.4 310,755 - -1.4 310,788 + +2.6 310,788 + -0.7 310,788 + -0.6 310,841 - +0.0 310,859 + -0.6 310,890 - +0.0 310,922 - +1.2 311,021 + paoA NOLOHH_02015 0.23 +0.1 311,021 + paoA NOLOHH_02015 0.23 +2.2 311,021 + paoA NOLOHH_02015 0.23 +0.5 311,022 - paoA NOLOHH_02015 0.23 +0.4 311,038 + paoA NOLOHH_02015 0.26 +1.0 311,039 - paoA NOLOHH_02015 0.26 -0.4 311,208 - paoA NOLOHH_02015 0.50 -0.2 311,282 + paoA NOLOHH_02015 0.61 -1.2 311,282 + paoA NOLOHH_02015 0.61 +0.6 311,282 + paoA NOLOHH_02015 0.61 +1.1 311,283 - paoA NOLOHH_02015 0.61 +0.1 311,283 - paoA NOLOHH_02015 0.61 +0.2 311,309 + paoA NOLOHH_02015 0.65 +0.7 311,378 - paoA NOLOHH_02015 0.75 +0.1 311,378 - paoA NOLOHH_02015 0.75 +0.7 311,465 + paoA NOLOHH_02015 0.88 +1.0 311,465 + paoA NOLOHH_02015 0.88 -1.2 311,465 + paoA NOLOHH_02015 0.88 -0.1 311,496 + -1.3 311,496 + +0.9 311,497 - +0.6 311,501 + -0.2 311,539 + +0.4 311,557 + +0.9 311,557 + -0.7 311,558 - +1.2 311,561 + -0.7 311,562 - +1.7 311,597 - +1.0 311,807 + paoB NOLOHH_02020 0.27 +0.8 311,853 + paoB NOLOHH_02020 0.32 +0.1 311,853 + paoB NOLOHH_02020 0.32 -0.1 311,854 - paoB NOLOHH_02020 0.32 -1.7 311,858 - paoB NOLOHH_02020 0.33 -1.2 311,879 - paoB NOLOHH_02020 0.35 -2.2 311,879 - paoB NOLOHH_02020 0.35 +0.7 311,936 - paoB NOLOHH_02020 0.41 -1.2 311,998 - paoB NOLOHH_02020 0.47 +1.0 312,003 + paoB NOLOHH_02020 0.48 -0.5 312,003 + paoB NOLOHH_02020 0.48 +1.3 312,004 - paoB NOLOHH_02020 0.48 +0.4 312,004 - paoB NOLOHH_02020 0.48 -0.3 312,019 - paoB NOLOHH_02020 0.49 -1.6 312,037 + paoB NOLOHH_02020 0.51 +0.2 312,125 + paoB NOLOHH_02020 0.61 -0.6 312,181 + paoB NOLOHH_02020 0.66 +1.0 312,223 + paoB NOLOHH_02020 0.71 -0.8 312,223 + paoB NOLOHH_02020 0.71 +0.8 312,224 - paoB NOLOHH_02020 0.71 +0.4 312,224 - paoB NOLOHH_02020 0.71 +1.0 312,224 - paoB NOLOHH_02020 0.71 +0.7 312,224 - paoB NOLOHH_02020 0.71 +0.1 312,224 - paoB NOLOHH_02020 0.71 -0.2 312,224 - paoB NOLOHH_02020 0.71 -0.4 312,224 - paoB NOLOHH_02020 0.71 +0.2 312,224 - paoB NOLOHH_02020 0.71 +0.4 312,224 - paoB NOLOHH_02020 0.71 -0.7 312,224 - paoB NOLOHH_02020 0.71 +0.8 312,224 - paoB NOLOHH_02020 0.71 +0.2 312,228 - paoB NOLOHH_02020 0.71 +0.3 312,255 - paoB NOLOHH_02020 0.74 -1.6 312,287 - paoB NOLOHH_02020 0.77 -0.6 312,328 - paoB NOLOHH_02020 0.82 +0.8 312,328 - paoB NOLOHH_02020 0.82 -0.2 312,334 + paoB NOLOHH_02020 0.82 -0.3 312,334 + paoB NOLOHH_02020 0.82 -0.2 312,334 + paoB NOLOHH_02020 0.82 +0.1 312,334 + paoB NOLOHH_02020 0.82 -0.3 312,335 - paoB NOLOHH_02020 0.82 -0.6 312,335 - paoB NOLOHH_02020 0.82 -0.8 312,335 - paoB NOLOHH_02020 0.82 +0.8 312,391 - paoB NOLOHH_02020 0.88 -0.1 312,391 - paoB NOLOHH_02020 0.88 +0.4 312,392 + paoB NOLOHH_02020 0.88 +0.4 312,393 - paoB NOLOHH_02020 0.89 -0.2 312,393 - paoB NOLOHH_02020 0.89 +0.4 312,439 + -0.6 312,439 + +0.4 312,652 + +0.5 312,652 + +0.2 312,652 + +0.2 312,652 + -0.4 312,653 - +1.0 312,653 - +1.8 312,654 + +0.6 312,655 - +3.0 312,729 - paoC NOLOHH_02025 0.10 +0.8 312,821 - paoC NOLOHH_02025 0.15 -0.3 312,821 - paoC NOLOHH_02025 0.15 +0.7 312,906 + paoC NOLOHH_02025 0.19 +0.4 312,910 - paoC NOLOHH_02025 0.19 -0.2 312,920 - paoC NOLOHH_02025 0.19 +0.7 313,032 + paoC NOLOHH_02025 0.24 +0.6 313,032 + paoC NOLOHH_02025 0.24 -0.7 313,036 + paoC NOLOHH_02025 0.24 +0.2 313,036 + paoC NOLOHH_02025 0.24 +0.2 313,036 + paoC NOLOHH_02025 0.24 +0.6 313,037 - paoC NOLOHH_02025 0.24 +0.3 313,059 + paoC NOLOHH_02025 0.25 -1.0 313,060 - paoC NOLOHH_02025 0.26 -0.8 313,060 - paoC NOLOHH_02025 0.26 +0.6 313,060 - paoC NOLOHH_02025 0.26 +1.2 313,104 + paoC NOLOHH_02025 0.28 -0.6 313,104 + paoC NOLOHH_02025 0.28 +0.0 313,104 + paoC NOLOHH_02025 0.28 -2.4 313,104 + paoC NOLOHH_02025 0.28 -1.2 313,105 - paoC NOLOHH_02025 0.28 +0.4 313,105 - paoC NOLOHH_02025 0.28 +0.6 313,105 - paoC NOLOHH_02025 0.28 +1.4 313,105 - paoC NOLOHH_02025 0.28 -1.9 313,105 - paoC NOLOHH_02025 0.28 +0.8 313,195 - paoC NOLOHH_02025 0.32 -0.2 313,197 + paoC NOLOHH_02025 0.32 +0.4 313,198 - paoC NOLOHH_02025 0.32 +0.4 313,198 - paoC NOLOHH_02025 0.32 -0.1 313,198 - paoC NOLOHH_02025 0.32 +0.2 313,207 + paoC NOLOHH_02025 0.32 +0.4 313,207 + paoC NOLOHH_02025 0.32 +0.4 313,208 - paoC NOLOHH_02025 0.32 +0.0 313,208 - paoC NOLOHH_02025 0.32 -1.6 313,320 + paoC NOLOHH_02025 0.37 -0.4 313,472 + paoC NOLOHH_02025 0.44 -0.1 313,472 + paoC NOLOHH_02025 0.44 +1.3 313,473 - paoC NOLOHH_02025 0.44 +0.4
Or see this region's nucleotide sequence