Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt betT and betI are separated by 128 nucleotides betI and betB are separated by 13 nucleotides
NOLOHH_01885: betT - choline BCCT transporter BetT, at 278,798 to 280,831
betT
NOLOHH_01890: betI - transcriptional regulator BetI, at 280,960 to 281,547
betI
NOLOHH_01895: betB - betaine-aldehyde dehydrogenase, at 281,561 to 283,033
betB
Position (kb) 280
281
282 Strain fitness (log2 ratio) -2
-1
0
1
2 at 279.977 kb on - strand, within betT at 280.008 kb on - strand, within betT at 280.042 kb on + strand, within betT at 280.043 kb on - strand, within betT at 280.043 kb on - strand, within betT at 280.176 kb on + strand, within betT at 280.176 kb on + strand, within betT at 280.176 kb on + strand, within betT at 280.177 kb on - strand, within betT at 280.177 kb on - strand, within betT at 280.180 kb on + strand, within betT at 280.180 kb on + strand, within betT at 280.181 kb on - strand, within betT at 280.181 kb on - strand, within betT at 280.181 kb on - strand, within betT at 280.181 kb on - strand, within betT at 280.207 kb on + strand, within betT at 280.345 kb on - strand, within betT at 280.468 kb on + strand, within betT at 280.468 kb on + strand, within betT at 280.469 kb on - strand, within betT at 280.469 kb on - strand, within betT at 280.469 kb on - strand, within betT at 280.469 kb on - strand, within betT at 280.469 kb on - strand, within betT at 280.470 kb on + strand, within betT at 280.470 kb on + strand, within betT at 280.470 kb on + strand, within betT at 280.470 kb on + strand, within betT at 280.471 kb on - strand, within betT at 280.471 kb on - strand, within betT at 280.471 kb on - strand, within betT at 280.636 kb on + strand at 280.636 kb on + strand at 280.636 kb on + strand at 280.636 kb on + strand at 280.637 kb on - strand at 280.637 kb on - strand at 280.637 kb on - strand at 280.638 kb on + strand at 280.638 kb on + strand at 280.638 kb on + strand at 280.639 kb on - strand at 280.639 kb on - strand at 280.639 kb on - strand at 280.655 kb on + strand at 280.659 kb on + strand at 280.659 kb on + strand at 280.659 kb on + strand at 280.659 kb on + strand at 280.660 kb on - strand at 280.660 kb on - strand at 280.660 kb on - strand at 280.660 kb on - strand at 280.660 kb on - strand at 280.660 kb on - strand at 280.660 kb on - strand at 280.660 kb on - strand at 280.662 kb on + strand at 280.662 kb on + strand at 280.663 kb on - strand at 280.663 kb on - strand at 280.679 kb on - strand at 280.777 kb on - strand at 280.923 kb on + strand at 280.923 kb on + strand at 280.924 kb on - strand at 280.924 kb on - strand at 280.927 kb on - strand at 280.927 kb on - strand at 280.927 kb on - strand at 280.930 kb on + strand at 281.105 kb on - strand, within betI at 281.186 kb on + strand, within betI at 281.186 kb on + strand, within betI at 281.187 kb on - strand, within betI at 281.307 kb on + strand, within betI at 281.307 kb on + strand, within betI at 281.307 kb on + strand, within betI at 281.423 kb on - strand, within betI at 281.423 kb on - strand, within betI at 281.520 kb on + strand at 281.521 kb on - strand at 281.523 kb on + strand at 281.588 kb on + strand at 281.588 kb on + strand at 281.588 kb on + strand at 281.588 kb on + strand at 281.588 kb on + strand at 281.588 kb on + strand at 281.589 kb on - strand at 281.589 kb on - strand at 281.589 kb on - strand at 281.589 kb on - strand at 281.589 kb on - strand at 281.590 kb on + strand at 281.591 kb on - strand at 281.592 kb on + strand at 281.592 kb on + strand at 281.592 kb on + strand at 281.592 kb on + strand at 281.592 kb on + strand at 281.593 kb on - strand at 281.593 kb on - strand at 281.593 kb on - strand at 281.593 kb on - strand at 281.593 kb on - strand at 281.603 kb on + strand at 281.604 kb on - strand at 281.606 kb on - strand at 281.756 kb on - strand, within betB at 281.770 kb on + strand, within betB at 281.791 kb on + strand, within betB at 281.904 kb on - strand, within betB at 281.906 kb on + strand, within betB at 281.962 kb on - strand, within betB at 282.109 kb on + strand, within betB at 282.134 kb on + strand, within betB at 282.162 kb on + strand, within betB at 282.162 kb on + strand, within betB at 282.162 kb on + strand, within betB at 282.163 kb on - strand, within betB at 282.166 kb on + strand, within betB at 282.167 kb on - strand, within betB at 282.203 kb on + strand, within betB at 282.204 kb on - strand, within betB at 282.241 kb on + strand, within betB at 282.419 kb on - strand, within betB at 282.529 kb on + strand, within betB
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 279,977 - betT NOLOHH_01885 0.58 +2.0 280,008 - betT NOLOHH_01885 0.59 -0.2 280,042 + betT NOLOHH_01885 0.61 +1.1 280,043 - betT NOLOHH_01885 0.61 -1.4 280,043 - betT NOLOHH_01885 0.61 +0.6 280,176 + betT NOLOHH_01885 0.68 -0.4 280,176 + betT NOLOHH_01885 0.68 -0.2 280,176 + betT NOLOHH_01885 0.68 -0.7 280,177 - betT NOLOHH_01885 0.68 -0.1 280,177 - betT NOLOHH_01885 0.68 -0.4 280,180 + betT NOLOHH_01885 0.68 +1.0 280,180 + betT NOLOHH_01885 0.68 +0.8 280,181 - betT NOLOHH_01885 0.68 +0.5 280,181 - betT NOLOHH_01885 0.68 -2.0 280,181 - betT NOLOHH_01885 0.68 +1.4 280,181 - betT NOLOHH_01885 0.68 +0.1 280,207 + betT NOLOHH_01885 0.69 -1.6 280,345 - betT NOLOHH_01885 0.76 +0.4 280,468 + betT NOLOHH_01885 0.82 -1.2 280,468 + betT NOLOHH_01885 0.82 +1.0 280,469 - betT NOLOHH_01885 0.82 -1.1 280,469 - betT NOLOHH_01885 0.82 +0.2 280,469 - betT NOLOHH_01885 0.82 +0.3 280,469 - betT NOLOHH_01885 0.82 +0.2 280,469 - betT NOLOHH_01885 0.82 -1.2 280,470 + betT NOLOHH_01885 0.82 +0.1 280,470 + betT NOLOHH_01885 0.82 +0.1 280,470 + betT NOLOHH_01885 0.82 -0.6 280,470 + betT NOLOHH_01885 0.82 +1.1 280,471 - betT NOLOHH_01885 0.82 -0.9 280,471 - betT NOLOHH_01885 0.82 -0.8 280,471 - betT NOLOHH_01885 0.82 -0.1 280,636 + -0.5 280,636 + +0.4 280,636 + -0.2 280,636 + +1.8 280,637 - -0.3 280,637 - -0.6 280,637 - -0.5 280,638 + +0.2 280,638 + +1.4 280,638 + -0.1 280,639 - -0.6 280,639 - -0.3 280,639 - +1.8 280,655 + +0.5 280,659 + -1.2 280,659 + -0.3 280,659 + +0.4 280,659 + -0.2 280,660 - -1.2 280,660 - +1.2 280,660 - +0.4 280,660 - -0.3 280,660 - -0.9 280,660 - +1.3 280,660 - +0.4 280,660 - -0.2 280,662 + -1.6 280,662 + +0.7 280,663 - -0.2 280,663 - +0.1 280,679 - -1.9 280,777 - +0.4 280,923 + +1.0 280,923 + +0.4 280,924 - +1.4 280,924 - +0.7 280,927 - +0.1 280,927 - -1.6 280,927 - -0.3 280,930 + +0.0 281,105 - betI NOLOHH_01890 0.25 +0.2 281,186 + betI NOLOHH_01890 0.38 -0.6 281,186 + betI NOLOHH_01890 0.38 +0.4 281,187 - betI NOLOHH_01890 0.39 -0.2 281,307 + betI NOLOHH_01890 0.59 +0.3 281,307 + betI NOLOHH_01890 0.59 +0.4 281,307 + betI NOLOHH_01890 0.59 -0.2 281,423 - betI NOLOHH_01890 0.79 +0.4 281,423 - betI NOLOHH_01890 0.79 +1.0 281,520 + +1.2 281,521 - +1.3 281,523 + -1.6 281,588 + -0.7 281,588 + +0.4 281,588 + -0.7 281,588 + -1.4 281,588 + -0.4 281,588 + +0.4 281,589 - -0.8 281,589 - +0.2 281,589 - +0.2 281,589 - -1.2 281,589 - +0.4 281,590 + +0.1 281,591 - -1.2 281,592 + +0.4 281,592 + +0.2 281,592 + -0.7 281,592 + +0.1 281,592 + +0.0 281,593 - +0.1 281,593 - -0.9 281,593 - -1.2 281,593 - +1.7 281,593 - -0.2 281,603 + -0.2 281,604 - -0.3 281,606 - -0.3 281,756 - betB NOLOHH_01895 0.13 +0.4 281,770 + betB NOLOHH_01895 0.14 -0.9 281,791 + betB NOLOHH_01895 0.16 +0.2 281,904 - betB NOLOHH_01895 0.23 -0.5 281,906 + betB NOLOHH_01895 0.23 +0.1 281,962 - betB NOLOHH_01895 0.27 -2.2 282,109 + betB NOLOHH_01895 0.37 +0.4 282,134 + betB NOLOHH_01895 0.39 -0.3 282,162 + betB NOLOHH_01895 0.41 +0.6 282,162 + betB NOLOHH_01895 0.41 -0.6 282,162 + betB NOLOHH_01895 0.41 -0.9 282,163 - betB NOLOHH_01895 0.41 -0.6 282,166 + betB NOLOHH_01895 0.41 +0.7 282,167 - betB NOLOHH_01895 0.41 -1.0 282,203 + betB NOLOHH_01895 0.44 -0.1 282,204 - betB NOLOHH_01895 0.44 +1.8 282,241 + betB NOLOHH_01895 0.46 -0.7 282,419 - betB NOLOHH_01895 0.58 +0.7 282,529 + betB NOLOHH_01895 0.66 +0.7
Or see this region's nucleotide sequence