Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yahB and pdeL are separated by 41 nucleotides pdeL and ehaA are separated by 141 nucleotides
NOLOHH_01870: yahB - Uncharacterized HTH-type transcriptional regulator YahB, at 272,038 to 272,970
yahB
NOLOHH_01875: pdeL - Cyclic di-GMP phosphodiesterase PdeL, at 273,012 to 274,100
pdeL
NOLOHH_01880: ehaA - autotransporter adhesin EhaA, at 274,242 to 278,225
ehaA
Position (kb) 273
274
275 Strain fitness (log2 ratio) -2
-1
0
1
2 at 272.015 kb on + strand at 272.016 kb on - strand at 272.019 kb on + strand at 272.106 kb on + strand at 272.146 kb on + strand, within yahB at 272.149 kb on + strand, within yahB at 272.149 kb on + strand, within yahB at 272.149 kb on + strand, within yahB at 272.149 kb on + strand, within yahB at 272.149 kb on + strand, within yahB at 272.150 kb on - strand, within yahB at 272.236 kb on + strand, within yahB at 272.294 kb on + strand, within yahB at 272.294 kb on + strand, within yahB at 272.294 kb on + strand, within yahB at 272.294 kb on + strand, within yahB at 272.294 kb on + strand, within yahB at 272.294 kb on + strand, within yahB at 272.294 kb on + strand, within yahB at 272.294 kb on + strand, within yahB at 272.295 kb on - strand, within yahB at 272.295 kb on - strand, within yahB at 272.295 kb on - strand, within yahB at 272.295 kb on - strand, within yahB at 272.295 kb on - strand, within yahB at 272.298 kb on + strand, within yahB at 272.301 kb on + strand, within yahB at 272.316 kb on - strand, within yahB at 272.337 kb on + strand, within yahB at 272.337 kb on + strand, within yahB at 272.341 kb on - strand, within yahB at 272.341 kb on - strand, within yahB at 272.353 kb on + strand, within yahB at 272.356 kb on - strand, within yahB at 272.382 kb on - strand, within yahB at 272.382 kb on - strand, within yahB at 272.437 kb on + strand, within yahB at 272.438 kb on - strand, within yahB at 272.460 kb on + strand, within yahB at 272.463 kb on + strand, within yahB at 272.464 kb on - strand, within yahB at 272.527 kb on + strand, within yahB at 272.528 kb on - strand, within yahB at 272.626 kb on + strand, within yahB at 272.631 kb on + strand, within yahB at 272.634 kb on + strand, within yahB at 272.635 kb on - strand, within yahB at 272.635 kb on - strand, within yahB at 272.635 kb on - strand, within yahB at 272.637 kb on + strand, within yahB at 272.637 kb on + strand, within yahB at 272.637 kb on + strand, within yahB at 272.637 kb on + strand, within yahB at 272.638 kb on - strand, within yahB at 272.665 kb on - strand, within yahB at 272.668 kb on - strand, within yahB at 272.776 kb on + strand, within yahB at 272.776 kb on + strand, within yahB at 272.777 kb on - strand, within yahB at 272.777 kb on - strand, within yahB at 272.931 kb on - strand at 272.941 kb on + strand at 272.941 kb on + strand at 272.941 kb on + strand at 272.942 kb on - strand at 272.968 kb on + strand at 272.969 kb on - strand at 273.044 kb on + strand at 273.051 kb on - strand at 273.074 kb on - strand at 273.079 kb on + strand at 273.079 kb on + strand at 273.086 kb on + strand at 273.114 kb on + strand at 273.115 kb on - strand at 273.155 kb on + strand, within pdeL at 273.177 kb on + strand, within pdeL at 273.201 kb on - strand, within pdeL at 273.201 kb on - strand, within pdeL at 273.329 kb on + strand, within pdeL at 273.330 kb on - strand, within pdeL at 273.330 kb on - strand, within pdeL at 273.330 kb on - strand, within pdeL at 273.330 kb on - strand, within pdeL at 273.358 kb on - strand, within pdeL at 273.386 kb on + strand, within pdeL at 273.426 kb on - strand, within pdeL at 273.588 kb on + strand, within pdeL at 273.589 kb on - strand, within pdeL at 273.597 kb on - strand, within pdeL at 273.675 kb on + strand, within pdeL at 273.783 kb on - strand, within pdeL at 273.881 kb on + strand, within pdeL at 273.881 kb on + strand, within pdeL at 273.882 kb on - strand, within pdeL at 273.884 kb on + strand, within pdeL at 273.885 kb on - strand, within pdeL at 273.911 kb on - strand, within pdeL at 274.006 kb on - strand at 274.116 kb on + strand at 274.117 kb on - strand at 274.117 kb on - strand at 274.200 kb on + strand at 274.201 kb on - strand at 274.228 kb on - strand at 274.234 kb on + strand at 274.235 kb on - strand at 274.256 kb on + strand at 274.256 kb on + strand at 274.282 kb on + strand at 274.283 kb on + strand at 274.283 kb on + strand at 274.283 kb on + strand at 274.284 kb on - strand at 274.284 kb on - strand at 274.284 kb on - strand at 274.284 kb on - strand at 274.284 kb on - strand at 274.284 kb on - strand at 274.286 kb on - strand at 274.286 kb on - strand at 274.342 kb on - strand at 274.377 kb on - strand at 274.377 kb on - strand at 274.416 kb on - strand at 274.458 kb on + strand at 274.484 kb on + strand at 274.485 kb on - strand at 274.499 kb on + strand at 274.500 kb on - strand at 274.563 kb on - strand at 274.563 kb on - strand at 274.563 kb on - strand at 274.563 kb on - strand at 274.563 kb on - strand at 274.642 kb on + strand, within ehaA at 274.642 kb on + strand, within ehaA at 274.643 kb on - strand, within ehaA at 274.643 kb on - strand, within ehaA at 274.643 kb on - strand, within ehaA at 274.643 kb on - strand, within ehaA at 274.643 kb on - strand, within ehaA at 274.643 kb on - strand, within ehaA at 274.684 kb on - strand, within ehaA at 274.684 kb on - strand, within ehaA at 274.697 kb on - strand, within ehaA at 274.736 kb on - strand, within ehaA at 274.749 kb on + strand, within ehaA at 274.749 kb on + strand, within ehaA at 274.749 kb on + strand, within ehaA at 274.750 kb on - strand, within ehaA at 274.772 kb on + strand, within ehaA at 274.808 kb on - strand, within ehaA at 274.817 kb on + strand, within ehaA at 274.838 kb on - strand, within ehaA at 274.850 kb on - strand, within ehaA at 274.862 kb on + strand, within ehaA at 274.862 kb on + strand, within ehaA at 274.862 kb on + strand, within ehaA at 274.863 kb on - strand, within ehaA at 274.863 kb on - strand, within ehaA at 274.863 kb on - strand, within ehaA at 274.863 kb on - strand, within ehaA at 275.014 kb on + strand, within ehaA at 275.060 kb on + strand, within ehaA at 275.060 kb on + strand, within ehaA at 275.061 kb on - strand, within ehaA at 275.063 kb on + strand, within ehaA at 275.090 kb on + strand, within ehaA at 275.091 kb on - strand, within ehaA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 272,015 + +1.0 272,016 - +1.4 272,019 + -0.0 272,106 + -0.7 272,146 + yahB NOLOHH_01870 0.12 -0.3 272,149 + yahB NOLOHH_01870 0.12 +0.9 272,149 + yahB NOLOHH_01870 0.12 +1.9 272,149 + yahB NOLOHH_01870 0.12 +0.4 272,149 + yahB NOLOHH_01870 0.12 +0.2 272,149 + yahB NOLOHH_01870 0.12 +0.2 272,150 - yahB NOLOHH_01870 0.12 +0.4 272,236 + yahB NOLOHH_01870 0.21 +0.4 272,294 + yahB NOLOHH_01870 0.27 +0.2 272,294 + yahB NOLOHH_01870 0.27 -1.3 272,294 + yahB NOLOHH_01870 0.27 -1.1 272,294 + yahB NOLOHH_01870 0.27 +1.0 272,294 + yahB NOLOHH_01870 0.27 +0.0 272,294 + yahB NOLOHH_01870 0.27 +0.8 272,294 + yahB NOLOHH_01870 0.27 -1.4 272,294 + yahB NOLOHH_01870 0.27 +0.4 272,295 - yahB NOLOHH_01870 0.28 +0.2 272,295 - yahB NOLOHH_01870 0.28 -0.8 272,295 - yahB NOLOHH_01870 0.28 -0.6 272,295 - yahB NOLOHH_01870 0.28 -0.7 272,295 - yahB NOLOHH_01870 0.28 -1.9 272,298 + yahB NOLOHH_01870 0.28 +0.4 272,301 + yahB NOLOHH_01870 0.28 +0.4 272,316 - yahB NOLOHH_01870 0.30 +1.1 272,337 + yahB NOLOHH_01870 0.32 -0.0 272,337 + yahB NOLOHH_01870 0.32 +2.0 272,341 - yahB NOLOHH_01870 0.32 -0.6 272,341 - yahB NOLOHH_01870 0.32 -0.6 272,353 + yahB NOLOHH_01870 0.34 +0.4 272,356 - yahB NOLOHH_01870 0.34 -0.9 272,382 - yahB NOLOHH_01870 0.37 +0.2 272,382 - yahB NOLOHH_01870 0.37 -1.2 272,437 + yahB NOLOHH_01870 0.43 -1.9 272,438 - yahB NOLOHH_01870 0.43 -0.2 272,460 + yahB NOLOHH_01870 0.45 +0.7 272,463 + yahB NOLOHH_01870 0.46 +0.8 272,464 - yahB NOLOHH_01870 0.46 -0.2 272,527 + yahB NOLOHH_01870 0.52 -0.2 272,528 - yahB NOLOHH_01870 0.53 -0.6 272,626 + yahB NOLOHH_01870 0.63 +0.4 272,631 + yahB NOLOHH_01870 0.64 -1.6 272,634 + yahB NOLOHH_01870 0.64 -0.2 272,635 - yahB NOLOHH_01870 0.64 +0.4 272,635 - yahB NOLOHH_01870 0.64 +2.0 272,635 - yahB NOLOHH_01870 0.64 -0.1 272,637 + yahB NOLOHH_01870 0.64 -0.5 272,637 + yahB NOLOHH_01870 0.64 +0.4 272,637 + yahB NOLOHH_01870 0.64 +0.0 272,637 + yahB NOLOHH_01870 0.64 -1.2 272,638 - yahB NOLOHH_01870 0.64 -0.1 272,665 - yahB NOLOHH_01870 0.67 -0.2 272,668 - yahB NOLOHH_01870 0.68 -0.3 272,776 + yahB NOLOHH_01870 0.79 +0.4 272,776 + yahB NOLOHH_01870 0.79 -1.2 272,777 - yahB NOLOHH_01870 0.79 -0.6 272,777 - yahB NOLOHH_01870 0.79 +1.4 272,931 - -0.9 272,941 + -0.9 272,941 + -0.4 272,941 + +0.4 272,942 - +0.4 272,968 + +2.2 272,969 - +0.1 273,044 + +0.4 273,051 - -0.6 273,074 - -0.6 273,079 + -0.0 273,079 + +0.0 273,086 + +0.4 273,114 + -0.3 273,115 - -0.2 273,155 + pdeL NOLOHH_01875 0.13 -0.1 273,177 + pdeL NOLOHH_01875 0.15 +0.4 273,201 - pdeL NOLOHH_01875 0.17 +1.3 273,201 - pdeL NOLOHH_01875 0.17 -0.2 273,329 + pdeL NOLOHH_01875 0.29 +0.7 273,330 - pdeL NOLOHH_01875 0.29 +1.2 273,330 - pdeL NOLOHH_01875 0.29 -0.6 273,330 - pdeL NOLOHH_01875 0.29 +0.6 273,330 - pdeL NOLOHH_01875 0.29 +1.2 273,358 - pdeL NOLOHH_01875 0.32 +2.0 273,386 + pdeL NOLOHH_01875 0.34 +0.8 273,426 - pdeL NOLOHH_01875 0.38 -0.8 273,588 + pdeL NOLOHH_01875 0.53 +0.6 273,589 - pdeL NOLOHH_01875 0.53 -0.1 273,597 - pdeL NOLOHH_01875 0.54 +0.4 273,675 + pdeL NOLOHH_01875 0.61 -0.2 273,783 - pdeL NOLOHH_01875 0.71 +0.1 273,881 + pdeL NOLOHH_01875 0.80 +2.0 273,881 + pdeL NOLOHH_01875 0.80 +1.0 273,882 - pdeL NOLOHH_01875 0.80 -0.2 273,884 + pdeL NOLOHH_01875 0.80 +1.4 273,885 - pdeL NOLOHH_01875 0.80 -0.2 273,911 - pdeL NOLOHH_01875 0.83 +1.0 274,006 - -0.2 274,116 + +0.6 274,117 - +0.0 274,117 - +1.0 274,200 + -0.6 274,201 - +1.8 274,228 - -0.6 274,234 + -1.4 274,235 - +0.2 274,256 + +0.4 274,256 + +0.9 274,282 + -0.6 274,283 + +1.4 274,283 + -1.2 274,283 + +1.0 274,284 - -0.1 274,284 - -1.1 274,284 - -1.9 274,284 - +0.4 274,284 - +1.0 274,284 - +1.2 274,286 - +0.4 274,286 - -0.3 274,342 - -1.0 274,377 - -0.3 274,377 - +0.4 274,416 - -0.6 274,458 + -0.4 274,484 + +1.0 274,485 - -0.2 274,499 + +0.4 274,500 - -0.3 274,563 - +0.4 274,563 - +0.7 274,563 - -0.5 274,563 - +1.2 274,563 - +0.8 274,642 + ehaA NOLOHH_01880 0.10 -0.4 274,642 + ehaA NOLOHH_01880 0.10 +0.4 274,643 - ehaA NOLOHH_01880 0.10 -0.6 274,643 - ehaA NOLOHH_01880 0.10 +2.4 274,643 - ehaA NOLOHH_01880 0.10 +0.0 274,643 - ehaA NOLOHH_01880 0.10 -0.4 274,643 - ehaA NOLOHH_01880 0.10 +0.4 274,643 - ehaA NOLOHH_01880 0.10 -0.3 274,684 - ehaA NOLOHH_01880 0.11 -0.3 274,684 - ehaA NOLOHH_01880 0.11 -1.0 274,697 - ehaA NOLOHH_01880 0.11 -1.3 274,736 - ehaA NOLOHH_01880 0.12 +1.4 274,749 + ehaA NOLOHH_01880 0.13 -1.2 274,749 + ehaA NOLOHH_01880 0.13 +0.7 274,749 + ehaA NOLOHH_01880 0.13 -0.6 274,750 - ehaA NOLOHH_01880 0.13 +1.7 274,772 + ehaA NOLOHH_01880 0.13 -0.3 274,808 - ehaA NOLOHH_01880 0.14 +0.6 274,817 + ehaA NOLOHH_01880 0.14 -0.5 274,838 - ehaA NOLOHH_01880 0.15 -0.9 274,850 - ehaA NOLOHH_01880 0.15 +0.8 274,862 + ehaA NOLOHH_01880 0.16 +0.6 274,862 + ehaA NOLOHH_01880 0.16 +0.6 274,862 + ehaA NOLOHH_01880 0.16 +0.3 274,863 - ehaA NOLOHH_01880 0.16 -0.6 274,863 - ehaA NOLOHH_01880 0.16 -1.2 274,863 - ehaA NOLOHH_01880 0.16 +1.0 274,863 - ehaA NOLOHH_01880 0.16 +0.1 275,014 + ehaA NOLOHH_01880 0.19 +0.8 275,060 + ehaA NOLOHH_01880 0.21 +0.6 275,060 + ehaA NOLOHH_01880 0.21 -0.3 275,061 - ehaA NOLOHH_01880 0.21 -1.0 275,063 + ehaA NOLOHH_01880 0.21 -0.6 275,090 + ehaA NOLOHH_01880 0.21 -0.7 275,091 - ehaA NOLOHH_01880 0.21 -0.2
Or see this region's nucleotide sequence