Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tgt and queA are separated by 55 nucleotides queA and acpH are separated by 92 nucleotides acpH and malZ are separated by 4 nucleotides
NOLOHH_01440: tgt - tRNA guanosine(34) transglycosylase Tgt, at 178,817 to 179,944
tgt
NOLOHH_01445: queA - tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA, at 180,000 to 181,070
queA
NOLOHH_01450: acpH - ACP phosphodiesterase, at 181,163 to 181,744
acpH
NOLOHH_01455: malZ - maltodextrin glucosidase, at 181,749 to 183,566
malZ
Position (kb) 179
180
181
182 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 179.005 kb on - strand, within tgt at 179.005 kb on - strand, within tgt at 179.072 kb on - strand, within tgt at 179.072 kb on - strand, within tgt at 179.074 kb on - strand, within tgt at 179.074 kb on - strand, within tgt at 179.178 kb on - strand, within tgt at 179.203 kb on + strand, within tgt at 179.253 kb on - strand, within tgt at 179.253 kb on - strand, within tgt at 179.253 kb on - strand, within tgt at 179.253 kb on - strand, within tgt at 179.253 kb on - strand, within tgt at 179.276 kb on - strand, within tgt at 179.276 kb on - strand, within tgt at 179.276 kb on - strand, within tgt at 179.276 kb on - strand, within tgt at 179.276 kb on - strand, within tgt at 179.337 kb on - strand, within tgt at 179.337 kb on - strand, within tgt at 179.357 kb on - strand, within tgt at 179.509 kb on + strand, within tgt at 179.510 kb on - strand, within tgt at 179.639 kb on - strand, within tgt at 179.842 kb on - strand at 179.842 kb on - strand at 179.877 kb on - strand at 179.956 kb on + strand at 180.044 kb on + strand at 180.045 kb on - strand at 180.045 kb on - strand at 180.077 kb on - strand at 180.088 kb on - strand at 180.098 kb on + strand at 180.098 kb on + strand at 180.099 kb on - strand at 180.146 kb on + strand, within queA at 180.218 kb on - strand, within queA at 180.218 kb on - strand, within queA at 180.222 kb on - strand, within queA at 180.298 kb on - strand, within queA at 180.298 kb on - strand, within queA at 180.298 kb on - strand, within queA at 180.566 kb on - strand, within queA at 180.566 kb on - strand, within queA at 180.566 kb on - strand, within queA at 180.616 kb on + strand, within queA at 180.617 kb on - strand, within queA at 180.647 kb on + strand, within queA at 180.648 kb on - strand, within queA at 180.678 kb on - strand, within queA at 180.728 kb on + strand, within queA at 180.788 kb on + strand, within queA at 180.894 kb on - strand, within queA at 180.897 kb on - strand, within queA at 180.988 kb on - strand at 180.998 kb on + strand at 181.091 kb on + strand at 181.156 kb on - strand at 181.156 kb on - strand at 181.157 kb on + strand at 181.157 kb on + strand at 181.157 kb on + strand at 181.158 kb on - strand at 181.291 kb on + strand, within acpH at 181.291 kb on + strand, within acpH at 181.291 kb on + strand, within acpH at 181.291 kb on + strand, within acpH at 181.292 kb on - strand, within acpH at 181.303 kb on + strand, within acpH at 181.303 kb on + strand, within acpH at 181.304 kb on - strand, within acpH at 181.311 kb on + strand, within acpH at 181.311 kb on + strand, within acpH at 181.312 kb on - strand, within acpH at 181.312 kb on - strand, within acpH at 181.384 kb on + strand, within acpH at 181.384 kb on + strand, within acpH at 181.385 kb on - strand, within acpH at 181.385 kb on - strand, within acpH at 181.385 kb on - strand, within acpH at 181.387 kb on + strand, within acpH at 181.388 kb on - strand, within acpH at 181.473 kb on - strand, within acpH at 181.538 kb on + strand, within acpH at 181.538 kb on + strand, within acpH at 181.538 kb on + strand, within acpH at 181.599 kb on + strand, within acpH at 181.659 kb on + strand, within acpH at 181.670 kb on + strand, within acpH at 181.670 kb on + strand, within acpH at 181.742 kb on + strand at 181.742 kb on + strand at 181.743 kb on - strand at 181.743 kb on - strand at 181.751 kb on - strand at 181.761 kb on + strand at 181.864 kb on - strand at 181.906 kb on - strand at 181.906 kb on - strand at 181.958 kb on - strand, within malZ at 182.001 kb on - strand, within malZ
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 179,005 - tgt NOLOHH_01440 0.17 +0.2 179,005 - tgt NOLOHH_01440 0.17 -0.2 179,072 - tgt NOLOHH_01440 0.23 +0.4 179,072 - tgt NOLOHH_01440 0.23 -1.0 179,074 - tgt NOLOHH_01440 0.23 -0.6 179,074 - tgt NOLOHH_01440 0.23 +0.7 179,178 - tgt NOLOHH_01440 0.32 -0.2 179,203 + tgt NOLOHH_01440 0.34 -0.6 179,253 - tgt NOLOHH_01440 0.39 -0.9 179,253 - tgt NOLOHH_01440 0.39 +1.4 179,253 - tgt NOLOHH_01440 0.39 +1.8 179,253 - tgt NOLOHH_01440 0.39 -0.9 179,253 - tgt NOLOHH_01440 0.39 +2.4 179,276 - tgt NOLOHH_01440 0.41 -1.2 179,276 - tgt NOLOHH_01440 0.41 +0.4 179,276 - tgt NOLOHH_01440 0.41 -1.9 179,276 - tgt NOLOHH_01440 0.41 -1.9 179,276 - tgt NOLOHH_01440 0.41 -0.6 179,337 - tgt NOLOHH_01440 0.46 -0.3 179,337 - tgt NOLOHH_01440 0.46 +0.7 179,357 - tgt NOLOHH_01440 0.48 -0.9 179,509 + tgt NOLOHH_01440 0.61 -0.6 179,510 - tgt NOLOHH_01440 0.61 -0.6 179,639 - tgt NOLOHH_01440 0.73 -0.6 179,842 - +0.4 179,842 - -0.6 179,877 - -1.9 179,956 + +0.4 180,044 + -0.6 180,045 - +1.0 180,045 - +0.4 180,077 - -0.3 180,088 - +1.0 180,098 + +0.1 180,098 + +0.0 180,099 - +1.0 180,146 + queA NOLOHH_01445 0.14 -1.6 180,218 - queA NOLOHH_01445 0.20 +0.4 180,218 - queA NOLOHH_01445 0.20 -0.7 180,222 - queA NOLOHH_01445 0.21 -0.6 180,298 - queA NOLOHH_01445 0.28 -3.3 180,298 - queA NOLOHH_01445 0.28 +3.0 180,298 - queA NOLOHH_01445 0.28 -0.8 180,566 - queA NOLOHH_01445 0.53 -1.9 180,566 - queA NOLOHH_01445 0.53 -0.6 180,566 - queA NOLOHH_01445 0.53 +1.4 180,616 + queA NOLOHH_01445 0.58 -0.6 180,617 - queA NOLOHH_01445 0.58 +0.7 180,647 + queA NOLOHH_01445 0.60 +0.0 180,648 - queA NOLOHH_01445 0.61 +1.4 180,678 - queA NOLOHH_01445 0.63 +0.4 180,728 + queA NOLOHH_01445 0.68 -0.6 180,788 + queA NOLOHH_01445 0.74 -0.2 180,894 - queA NOLOHH_01445 0.83 -0.1 180,897 - queA NOLOHH_01445 0.84 -3.0 180,988 - -0.6 180,998 + -1.9 181,091 + +1.4 181,156 - -1.2 181,156 - +0.4 181,157 + +1.3 181,157 + -0.6 181,157 + +0.2 181,158 - -1.4 181,291 + acpH NOLOHH_01450 0.22 -0.3 181,291 + acpH NOLOHH_01450 0.22 +0.1 181,291 + acpH NOLOHH_01450 0.22 -0.2 181,291 + acpH NOLOHH_01450 0.22 +0.7 181,292 - acpH NOLOHH_01450 0.22 -0.6 181,303 + acpH NOLOHH_01450 0.24 +1.7 181,303 + acpH NOLOHH_01450 0.24 +0.8 181,304 - acpH NOLOHH_01450 0.24 -0.6 181,311 + acpH NOLOHH_01450 0.25 +0.1 181,311 + acpH NOLOHH_01450 0.25 -1.6 181,312 - acpH NOLOHH_01450 0.26 +1.4 181,312 - acpH NOLOHH_01450 0.26 +0.4 181,384 + acpH NOLOHH_01450 0.38 +0.1 181,384 + acpH NOLOHH_01450 0.38 -0.6 181,385 - acpH NOLOHH_01450 0.38 -0.5 181,385 - acpH NOLOHH_01450 0.38 +0.8 181,385 - acpH NOLOHH_01450 0.38 -1.2 181,387 + acpH NOLOHH_01450 0.38 -0.6 181,388 - acpH NOLOHH_01450 0.39 +1.0 181,473 - acpH NOLOHH_01450 0.53 -0.9 181,538 + acpH NOLOHH_01450 0.64 -0.4 181,538 + acpH NOLOHH_01450 0.64 -1.3 181,538 + acpH NOLOHH_01450 0.64 -0.4 181,599 + acpH NOLOHH_01450 0.75 -0.6 181,659 + acpH NOLOHH_01450 0.85 +0.8 181,670 + acpH NOLOHH_01450 0.87 +0.4 181,670 + acpH NOLOHH_01450 0.87 -0.6 181,742 + -0.3 181,742 + -0.6 181,743 - +0.3 181,743 - -0.4 181,751 - +1.2 181,761 + +0.3 181,864 - +1.8 181,906 - +0.8 181,906 - +3.0 181,958 - malZ NOLOHH_01455 0.11 +0.4 182,001 - malZ NOLOHH_01455 0.14 +0.4
Or see this region's nucleotide sequence