Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt qmcA and ybbJ overlap by 4 nucleotides ybbJ and cueR are separated by 0 nucleotides cueR and ybaT are separated by 124 nucleotides
NOLOHH_00990: qmcA - Protein QmcA, at 87,189 to 88,106
qmcA
NOLOHH_00995: ybbJ - Inner membrane protein YbbJ, at 88,103 to 88,561
ybbJ
NOLOHH_01000: cueR - Cu(I)-responsive transcriptional regulator, at 88,562 to 88,969
cueR
NOLOHH_01005: ybaT - Inner membrane transport protein YbaT, at 89,094 to 90,386
ybaT
Position (kb) 88
89 Strain fitness (log2 ratio) -2
-1
0
1
2 at 87.612 kb on - strand, within qmcA at 87.692 kb on + strand, within qmcA at 87.692 kb on + strand, within qmcA at 87.693 kb on - strand, within qmcA at 87.741 kb on + strand, within qmcA at 87.741 kb on + strand, within qmcA at 87.930 kb on - strand, within qmcA at 87.945 kb on + strand, within qmcA at 87.945 kb on + strand, within qmcA at 87.945 kb on + strand, within qmcA at 87.945 kb on + strand, within qmcA at 87.945 kb on + strand, within qmcA at 87.946 kb on - strand, within qmcA at 87.946 kb on - strand, within qmcA at 87.963 kb on + strand, within qmcA at 87.963 kb on + strand, within qmcA at 87.964 kb on - strand, within qmcA at 88.009 kb on + strand, within qmcA at 88.009 kb on + strand, within qmcA at 88.009 kb on + strand, within qmcA at 88.010 kb on - strand, within qmcA at 88.010 kb on - strand, within qmcA at 88.113 kb on + strand at 88.132 kb on + strand at 88.193 kb on + strand, within ybbJ at 88.193 kb on + strand, within ybbJ at 88.193 kb on + strand, within ybbJ at 88.275 kb on + strand, within ybbJ at 88.368 kb on + strand, within ybbJ at 88.442 kb on - strand, within ybbJ at 88.499 kb on - strand, within ybbJ at 88.530 kb on + strand at 88.536 kb on + strand at 88.536 kb on + strand at 88.536 kb on + strand at 88.536 kb on + strand at 88.536 kb on + strand at 88.536 kb on + strand at 88.536 kb on + strand at 88.536 kb on + strand at 88.537 kb on - strand at 88.559 kb on + strand at 88.559 kb on + strand at 88.560 kb on - strand at 88.796 kb on - strand, within cueR at 88.824 kb on - strand, within cueR at 88.854 kb on + strand, within cueR at 88.855 kb on - strand, within cueR at 88.953 kb on - strand at 89.016 kb on - strand at 89.063 kb on + strand at 89.064 kb on - strand at 89.066 kb on + strand at 89.066 kb on + strand at 89.067 kb on - strand at 89.096 kb on - strand at 89.096 kb on - strand at 89.097 kb on + strand at 89.098 kb on - strand at 89.105 kb on + strand at 89.132 kb on + strand at 89.132 kb on + strand at 89.133 kb on - strand at 89.142 kb on + strand at 89.198 kb on - strand at 89.198 kb on - strand at 89.235 kb on - strand, within ybaT at 89.235 kb on - strand, within ybaT at 89.308 kb on + strand, within ybaT at 89.352 kb on + strand, within ybaT at 89.378 kb on + strand, within ybaT at 89.378 kb on + strand, within ybaT at 89.412 kb on - strand, within ybaT at 89.432 kb on + strand, within ybaT at 89.432 kb on + strand, within ybaT at 89.433 kb on - strand, within ybaT at 89.440 kb on - strand, within ybaT at 89.440 kb on - strand, within ybaT at 89.440 kb on - strand, within ybaT at 89.483 kb on + strand, within ybaT at 89.609 kb on - strand, within ybaT at 89.632 kb on - strand, within ybaT at 89.664 kb on - strand, within ybaT at 89.664 kb on - strand, within ybaT at 89.664 kb on - strand, within ybaT at 89.664 kb on - strand, within ybaT at 89.664 kb on - strand, within ybaT at 89.665 kb on + strand, within ybaT at 89.665 kb on + strand, within ybaT at 89.665 kb on + strand, within ybaT at 89.665 kb on + strand, within ybaT at 89.666 kb on - strand, within ybaT at 89.666 kb on - strand, within ybaT at 89.666 kb on - strand, within ybaT at 89.666 kb on - strand, within ybaT at 89.666 kb on - strand, within ybaT at 89.666 kb on - strand, within ybaT at 89.666 kb on - strand, within ybaT at 89.666 kb on - strand, within ybaT at 89.666 kb on - strand, within ybaT at 89.712 kb on - strand, within ybaT at 89.736 kb on - strand, within ybaT at 89.837 kb on + strand, within ybaT at 89.838 kb on - strand, within ybaT
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 87,612 - qmcA NOLOHH_00990 0.46 +0.5 87,692 + qmcA NOLOHH_00990 0.55 +0.9 87,692 + qmcA NOLOHH_00990 0.55 +0.2 87,693 - qmcA NOLOHH_00990 0.55 +0.8 87,741 + qmcA NOLOHH_00990 0.60 +1.5 87,741 + qmcA NOLOHH_00990 0.60 +0.5 87,930 - qmcA NOLOHH_00990 0.81 +0.1 87,945 + qmcA NOLOHH_00990 0.82 -0.8 87,945 + qmcA NOLOHH_00990 0.82 -0.2 87,945 + qmcA NOLOHH_00990 0.82 -0.5 87,945 + qmcA NOLOHH_00990 0.82 +1.6 87,945 + qmcA NOLOHH_00990 0.82 -0.5 87,946 - qmcA NOLOHH_00990 0.82 +1.8 87,946 - qmcA NOLOHH_00990 0.82 -0.5 87,963 + qmcA NOLOHH_00990 0.84 +0.7 87,963 + qmcA NOLOHH_00990 0.84 -0.3 87,964 - qmcA NOLOHH_00990 0.84 -0.3 88,009 + qmcA NOLOHH_00990 0.89 -0.9 88,009 + qmcA NOLOHH_00990 0.89 -0.1 88,009 + qmcA NOLOHH_00990 0.89 +0.9 88,010 - qmcA NOLOHH_00990 0.89 -0.5 88,010 - qmcA NOLOHH_00990 0.89 -2.7 88,113 + +0.3 88,132 + -0.1 88,193 + ybbJ NOLOHH_00995 0.20 +0.2 88,193 + ybbJ NOLOHH_00995 0.20 -1.5 88,193 + ybbJ NOLOHH_00995 0.20 -0.6 88,275 + ybbJ NOLOHH_00995 0.37 +0.5 88,368 + ybbJ NOLOHH_00995 0.58 +0.6 88,442 - ybbJ NOLOHH_00995 0.74 +1.5 88,499 - ybbJ NOLOHH_00995 0.86 -0.1 88,530 + +1.7 88,536 + -0.1 88,536 + -0.5 88,536 + +0.1 88,536 + +0.1 88,536 + +0.9 88,536 + -0.1 88,536 + +1.0 88,536 + +1.0 88,537 - -1.4 88,559 + +0.8 88,559 + +1.2 88,560 - +0.0 88,796 - cueR NOLOHH_01000 0.57 +0.0 88,824 - cueR NOLOHH_01000 0.64 +0.6 88,854 + cueR NOLOHH_01000 0.72 -0.9 88,855 - cueR NOLOHH_01000 0.72 +0.1 88,953 - +0.8 89,016 - +0.5 89,063 + -0.5 89,064 - +0.5 89,066 + +1.5 89,066 + +1.7 89,067 - +0.1 89,096 - +1.5 89,096 - -0.3 89,097 + +0.0 89,098 - +0.5 89,105 + +0.0 89,132 + -0.1 89,132 + -0.3 89,133 - +1.0 89,142 + -1.1 89,198 - +1.2 89,198 - -0.2 89,235 - ybaT NOLOHH_01005 0.11 +0.5 89,235 - ybaT NOLOHH_01005 0.11 +0.1 89,308 + ybaT NOLOHH_01005 0.17 +0.5 89,352 + ybaT NOLOHH_01005 0.20 -1.5 89,378 + ybaT NOLOHH_01005 0.22 -0.9 89,378 + ybaT NOLOHH_01005 0.22 -0.1 89,412 - ybaT NOLOHH_01005 0.25 +0.7 89,432 + ybaT NOLOHH_01005 0.26 +0.1 89,432 + ybaT NOLOHH_01005 0.26 -0.5 89,433 - ybaT NOLOHH_01005 0.26 -0.1 89,440 - ybaT NOLOHH_01005 0.27 -0.0 89,440 - ybaT NOLOHH_01005 0.27 +1.1 89,440 - ybaT NOLOHH_01005 0.27 +0.5 89,483 + ybaT NOLOHH_01005 0.30 -0.2 89,609 - ybaT NOLOHH_01005 0.40 -0.4 89,632 - ybaT NOLOHH_01005 0.42 +0.0 89,664 - ybaT NOLOHH_01005 0.44 -0.5 89,664 - ybaT NOLOHH_01005 0.44 -0.4 89,664 - ybaT NOLOHH_01005 0.44 +0.6 89,664 - ybaT NOLOHH_01005 0.44 +0.0 89,664 - ybaT NOLOHH_01005 0.44 -0.3 89,665 + ybaT NOLOHH_01005 0.44 +0.5 89,665 + ybaT NOLOHH_01005 0.44 -0.5 89,665 + ybaT NOLOHH_01005 0.44 -1.5 89,665 + ybaT NOLOHH_01005 0.44 -1.1 89,666 - ybaT NOLOHH_01005 0.44 -0.7 89,666 - ybaT NOLOHH_01005 0.44 +1.7 89,666 - ybaT NOLOHH_01005 0.44 -0.9 89,666 - ybaT NOLOHH_01005 0.44 -0.9 89,666 - ybaT NOLOHH_01005 0.44 -0.2 89,666 - ybaT NOLOHH_01005 0.44 -0.1 89,666 - ybaT NOLOHH_01005 0.44 -0.5 89,666 - ybaT NOLOHH_01005 0.44 -0.1 89,666 - ybaT NOLOHH_01005 0.44 -0.5 89,712 - ybaT NOLOHH_01005 0.48 +0.9 89,736 - ybaT NOLOHH_01005 0.50 +1.0 89,837 + ybaT NOLOHH_01005 0.57 -0.9 89,838 - ybaT NOLOHH_01005 0.58 -0.1
Or see this region's nucleotide sequence