Strain Fitness in Escherichia coli ECOR27 around NOLOHH_00955

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrhsD and ybbP are separated by 429 nucleotidesybbP and ybbA overlap by 4 nucleotidesybbA and tesA are separated by 0 nucleotides NOLOHH_00950: rhsD - rhs element protein RhsD, at 75,413 to 79,702 rhsD NOLOHH_00955: ybbP - Uncharacterized ABC transporter permease YbbP, at 80,132 to 82,546 ybbP NOLOHH_00960: ybbA - ABC transporter ATP-binding protein, at 82,543 to 83,229 ybbA NOLOHH_00965: tesA - multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1, at 83,230 to 83,823 tesA Position (kb) 80 81 82 83Strain fitness (log2 ratio) -2 -1 0 1 2at 79.243 kb on + strand, within rhsDat 79.244 kb on - strand, within rhsDat 79.306 kb on - strandat 79.367 kb on + strandat 79.471 kb on - strandat 79.626 kb on - strandat 79.626 kb on - strandat 79.669 kb on + strandat 79.669 kb on + strandat 79.722 kb on - strandat 79.784 kb on - strandat 80.125 kb on - strandat 80.516 kb on + strand, within ybbPat 80.516 kb on + strand, within ybbPat 80.664 kb on - strand, within ybbPat 80.684 kb on - strand, within ybbPat 80.695 kb on + strand, within ybbPat 80.887 kb on + strand, within ybbPat 80.900 kb on - strand, within ybbPat 80.936 kb on - strand, within ybbPat 80.988 kb on + strand, within ybbPat 81.005 kb on + strand, within ybbPat 81.041 kb on + strand, within ybbPat 81.061 kb on + strand, within ybbPat 81.061 kb on + strand, within ybbPat 81.061 kb on + strand, within ybbPat 81.073 kb on - strand, within ybbPat 81.154 kb on + strand, within ybbPat 81.154 kb on + strand, within ybbPat 81.155 kb on - strand, within ybbPat 81.206 kb on + strand, within ybbPat 81.207 kb on - strand, within ybbPat 81.264 kb on - strand, within ybbPat 81.264 kb on - strand, within ybbPat 81.309 kb on - strand, within ybbPat 81.309 kb on - strand, within ybbPat 81.440 kb on - strand, within ybbPat 81.440 kb on - strand, within ybbPat 81.443 kb on + strand, within ybbPat 81.677 kb on + strand, within ybbPat 81.677 kb on + strand, within ybbPat 81.877 kb on - strand, within ybbPat 81.896 kb on - strand, within ybbPat 81.905 kb on + strand, within ybbPat 81.921 kb on + strand, within ybbPat 81.922 kb on - strand, within ybbPat 82.169 kb on + strand, within ybbPat 82.169 kb on + strand, within ybbPat 82.222 kb on - strand, within ybbPat 82.222 kb on - strand, within ybbPat 82.222 kb on - strand, within ybbPat 82.230 kb on + strand, within ybbPat 82.235 kb on - strand, within ybbPat 82.235 kb on - strand, within ybbPat 82.235 kb on - strand, within ybbPat 82.482 kb on - strandat 82.680 kb on + strand, within ybbAat 82.828 kb on + strand, within ybbAat 82.873 kb on - strand, within ybbAat 83.001 kb on + strand, within ybbAat 83.002 kb on - strand, within ybbAat 83.004 kb on + strand, within ybbAat 83.004 kb on + strand, within ybbAat 83.004 kb on + strand, within ybbAat 83.004 kb on + strand, within ybbAat 83.004 kb on + strand, within ybbAat 83.004 kb on + strand, within ybbAat 83.004 kb on + strand, within ybbAat 83.005 kb on - strand, within ybbAat 83.005 kb on - strand, within ybbAat 83.005 kb on - strand, within ybbAat 83.005 kb on - strand, within ybbAat 83.005 kb on - strand, within ybbAat 83.005 kb on - strand, within ybbAat 83.005 kb on - strand, within ybbAat 83.005 kb on - strand, within ybbAat 83.005 kb on - strand, within ybbAat 83.005 kb on - strand, within ybbAat 83.009 kb on - strand, within ybbAat 83.361 kb on + strand, within tesAat 83.361 kb on + strand, within tesAat 83.361 kb on + strand, within tesAat 83.384 kb on + strand, within tesAat 83.388 kb on + strand, within tesAat 83.388 kb on + strand, within tesA

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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79,243 + rhsD NOLOHH_00950 0.89 -0.1
79,244 - rhsD NOLOHH_00950 0.89 -0.3
79,306 - +2.0
79,367 + +1.0
79,471 - -0.8
79,626 - +0.9
79,626 - -0.7
79,669 + +0.3
79,669 + -1.1
79,722 - -1.1
79,784 - +0.0
80,125 - +0.6
80,516 + ybbP NOLOHH_00955 0.16 +0.5
80,516 + ybbP NOLOHH_00955 0.16 -0.1
80,664 - ybbP NOLOHH_00955 0.22 +0.1
80,684 - ybbP NOLOHH_00955 0.23 -0.0
80,695 + ybbP NOLOHH_00955 0.23 +0.9
80,887 + ybbP NOLOHH_00955 0.31 +0.5
80,900 - ybbP NOLOHH_00955 0.32 -0.1
80,936 - ybbP NOLOHH_00955 0.33 +0.5
80,988 + ybbP NOLOHH_00955 0.35 +0.5
81,005 + ybbP NOLOHH_00955 0.36 +0.9
81,041 + ybbP NOLOHH_00955 0.38 +0.7
81,061 + ybbP NOLOHH_00955 0.38 -0.4
81,061 + ybbP NOLOHH_00955 0.38 +0.7
81,061 + ybbP NOLOHH_00955 0.38 -0.5
81,073 - ybbP NOLOHH_00955 0.39 +0.5
81,154 + ybbP NOLOHH_00955 0.42 -0.9
81,154 + ybbP NOLOHH_00955 0.42 -0.5
81,155 - ybbP NOLOHH_00955 0.42 +0.2
81,206 + ybbP NOLOHH_00955 0.44 +0.9
81,207 - ybbP NOLOHH_00955 0.45 -1.1
81,264 - ybbP NOLOHH_00955 0.47 +1.0
81,264 - ybbP NOLOHH_00955 0.47 +0.1
81,309 - ybbP NOLOHH_00955 0.49 +0.9
81,309 - ybbP NOLOHH_00955 0.49 +0.1
81,440 - ybbP NOLOHH_00955 0.54 -0.9
81,440 - ybbP NOLOHH_00955 0.54 +0.1
81,443 + ybbP NOLOHH_00955 0.54 -0.0
81,677 + ybbP NOLOHH_00955 0.64 -0.9
81,677 + ybbP NOLOHH_00955 0.64 +0.2
81,877 - ybbP NOLOHH_00955 0.72 -0.7
81,896 - ybbP NOLOHH_00955 0.73 +0.5
81,905 + ybbP NOLOHH_00955 0.73 -1.1
81,921 + ybbP NOLOHH_00955 0.74 -1.5
81,922 - ybbP NOLOHH_00955 0.74 -1.1
82,169 + ybbP NOLOHH_00955 0.84 -0.1
82,169 + ybbP NOLOHH_00955 0.84 +0.3
82,222 - ybbP NOLOHH_00955 0.87 +0.5
82,222 - ybbP NOLOHH_00955 0.87 -0.7
82,222 - ybbP NOLOHH_00955 0.87 +0.0
82,230 + ybbP NOLOHH_00955 0.87 +0.9
82,235 - ybbP NOLOHH_00955 0.87 +0.3
82,235 - ybbP NOLOHH_00955 0.87 +0.1
82,235 - ybbP NOLOHH_00955 0.87 +0.7
82,482 - -0.3
82,680 + ybbA NOLOHH_00960 0.20 -2.1
82,828 + ybbA NOLOHH_00960 0.41 +0.5
82,873 - ybbA NOLOHH_00960 0.48 +0.7
83,001 + ybbA NOLOHH_00960 0.67 +1.5
83,002 - ybbA NOLOHH_00960 0.67 -0.1
83,004 + ybbA NOLOHH_00960 0.67 +0.5
83,004 + ybbA NOLOHH_00960 0.67 +0.9
83,004 + ybbA NOLOHH_00960 0.67 -0.4
83,004 + ybbA NOLOHH_00960 0.67 +0.2
83,004 + ybbA NOLOHH_00960 0.67 +0.5
83,004 + ybbA NOLOHH_00960 0.67 -0.4
83,004 + ybbA NOLOHH_00960 0.67 -0.1
83,005 - ybbA NOLOHH_00960 0.67 -0.2
83,005 - ybbA NOLOHH_00960 0.67 +0.9
83,005 - ybbA NOLOHH_00960 0.67 +0.1
83,005 - ybbA NOLOHH_00960 0.67 +0.0
83,005 - ybbA NOLOHH_00960 0.67 -0.7
83,005 - ybbA NOLOHH_00960 0.67 -0.5
83,005 - ybbA NOLOHH_00960 0.67 -2.4
83,005 - ybbA NOLOHH_00960 0.67 -0.4
83,005 - ybbA NOLOHH_00960 0.67 +0.8
83,005 - ybbA NOLOHH_00960 0.67 +0.5
83,009 - ybbA NOLOHH_00960 0.68 -0.1
83,361 + tesA NOLOHH_00965 0.22 +0.5
83,361 + tesA NOLOHH_00965 0.22 +0.0
83,361 + tesA NOLOHH_00965 0.22 +0.5
83,384 + tesA NOLOHH_00965 0.26 +0.7
83,388 + tesA NOLOHH_00965 0.27 +0.1
83,388 + tesA NOLOHH_00965 0.27 +2.5

Or see this region's nucleotide sequence