Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_00940 and ybbC overlap by 1 nucleotides ybbC and rhsD are separated by 39 nucleotides rhsD and ybbP are separated by 429 nucleotides
NOLOHH_00940: NOLOHH_00940 - RHS repeat protein, at 74,295 to 75,005
_00940
NOLOHH_00945: ybbC - Uncharacterized protein YbbC, at 75,005 to 75,373
ybbC
NOLOHH_00950: rhsD - rhs element protein RhsD, at 75,413 to 79,702
rhsD
NOLOHH_00955: ybbP - Uncharacterized ABC transporter permease YbbP, at 80,132 to 82,546
ybbP
Position (kb) 75
76
77
78
79
80 Strain fitness (log2 ratio) -2
-1
0
1
2 at 74.682 kb on + strand, within NOLOHH_00940 at 74.709 kb on + strand, within NOLOHH_00940 at 75.014 kb on - strand at 75.018 kb on - strand at 75.116 kb on - strand, within ybbC at 75.189 kb on - strand, within ybbC at 75.367 kb on - strand at 75.630 kb on + strand at 75.772 kb on + strand at 75.776 kb on + strand at 75.883 kb on + strand, within rhsD at 75.883 kb on + strand, within rhsD at 76.007 kb on - strand, within rhsD at 76.007 kb on - strand, within rhsD at 76.007 kb on - strand, within rhsD at 76.010 kb on - strand, within rhsD at 76.010 kb on - strand, within rhsD at 76.171 kb on + strand, within rhsD at 76.225 kb on - strand, within rhsD at 76.392 kb on - strand, within rhsD at 76.687 kb on - strand, within rhsD at 76.728 kb on + strand, within rhsD at 76.728 kb on + strand, within rhsD at 76.729 kb on - strand, within rhsD at 76.729 kb on - strand, within rhsD at 76.729 kb on - strand, within rhsD at 76.729 kb on - strand, within rhsD at 76.755 kb on + strand, within rhsD at 76.762 kb on - strand, within rhsD at 76.762 kb on - strand, within rhsD at 76.790 kb on + strand, within rhsD at 77.169 kb on + strand, within rhsD at 77.236 kb on + strand, within rhsD at 77.358 kb on + strand, within rhsD at 77.358 kb on + strand, within rhsD at 77.524 kb on - strand, within rhsD at 77.524 kb on - strand, within rhsD at 77.586 kb on + strand, within rhsD at 77.587 kb on - strand, within rhsD at 77.710 kb on - strand, within rhsD at 77.710 kb on - strand, within rhsD at 77.710 kb on - strand, within rhsD at 78.903 kb on - strand, within rhsD at 78.903 kb on - strand, within rhsD at 78.903 kb on - strand, within rhsD at 79.243 kb on + strand, within rhsD at 79.244 kb on - strand, within rhsD at 79.306 kb on - strand at 79.367 kb on + strand at 79.471 kb on - strand at 79.626 kb on - strand at 79.626 kb on - strand at 79.669 kb on + strand at 79.669 kb on + strand at 79.722 kb on - strand at 79.784 kb on - strand at 80.125 kb on - strand at 80.516 kb on + strand, within ybbP at 80.516 kb on + strand, within ybbP at 80.664 kb on - strand, within ybbP at 80.684 kb on - strand, within ybbP at 80.695 kb on + strand, within ybbP
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 74,682 + NOLOHH_00940 0.54 +0.5 74,709 + NOLOHH_00940 0.58 -1.1 75,014 - -0.3 75,018 - +1.2 75,116 - ybbC NOLOHH_00945 0.30 -1.0 75,189 - ybbC NOLOHH_00945 0.50 +0.5 75,367 - -1.1 75,630 + +1.0 75,772 + -0.4 75,776 + +0.9 75,883 + rhsD NOLOHH_00950 0.11 +0.5 75,883 + rhsD NOLOHH_00950 0.11 +1.0 76,007 - rhsD NOLOHH_00950 0.14 +0.7 76,007 - rhsD NOLOHH_00950 0.14 -0.3 76,007 - rhsD NOLOHH_00950 0.14 +0.5 76,010 - rhsD NOLOHH_00950 0.14 -0.3 76,010 - rhsD NOLOHH_00950 0.14 +0.2 76,171 + rhsD NOLOHH_00950 0.18 +0.2 76,225 - rhsD NOLOHH_00950 0.19 +0.1 76,392 - rhsD NOLOHH_00950 0.23 -0.9 76,687 - rhsD NOLOHH_00950 0.30 +1.2 76,728 + rhsD NOLOHH_00950 0.31 -1.1 76,728 + rhsD NOLOHH_00950 0.31 -0.0 76,729 - rhsD NOLOHH_00950 0.31 -0.4 76,729 - rhsD NOLOHH_00950 0.31 -0.7 76,729 - rhsD NOLOHH_00950 0.31 +0.5 76,729 - rhsD NOLOHH_00950 0.31 +0.0 76,755 + rhsD NOLOHH_00950 0.31 -1.5 76,762 - rhsD NOLOHH_00950 0.31 +0.5 76,762 - rhsD NOLOHH_00950 0.31 +0.9 76,790 + rhsD NOLOHH_00950 0.32 -1.1 77,169 + rhsD NOLOHH_00950 0.41 -0.5 77,236 + rhsD NOLOHH_00950 0.42 +0.1 77,358 + rhsD NOLOHH_00950 0.45 -0.1 77,358 + rhsD NOLOHH_00950 0.45 +0.9 77,524 - rhsD NOLOHH_00950 0.49 +0.0 77,524 - rhsD NOLOHH_00950 0.49 +0.3 77,586 + rhsD NOLOHH_00950 0.51 -1.9 77,587 - rhsD NOLOHH_00950 0.51 +0.5 77,710 - rhsD NOLOHH_00950 0.54 +0.1 77,710 - rhsD NOLOHH_00950 0.54 -0.5 77,710 - rhsD NOLOHH_00950 0.54 +0.1 78,903 - rhsD NOLOHH_00950 0.81 -1.8 78,903 - rhsD NOLOHH_00950 0.81 +1.5 78,903 - rhsD NOLOHH_00950 0.81 -0.9 79,243 + rhsD NOLOHH_00950 0.89 -0.1 79,244 - rhsD NOLOHH_00950 0.89 -0.3 79,306 - +2.0 79,367 + +1.0 79,471 - -0.8 79,626 - +0.9 79,626 - -0.7 79,669 + +0.3 79,669 + -1.1 79,722 - -1.1 79,784 - +0.0 80,125 - +0.6 80,516 + ybbP NOLOHH_00955 0.16 +0.5 80,516 + ybbP NOLOHH_00955 0.16 -0.1 80,664 - ybbP NOLOHH_00955 0.22 +0.1 80,684 - ybbP NOLOHH_00955 0.23 -0.0 80,695 + ybbP NOLOHH_00955 0.23 +0.9
Or see this region's nucleotide sequence