Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mnmH and NOLOHH_00930 are separated by 115 nucleotides NOLOHH_00930 and NOLOHH_00935 are separated by 486 nucleotides NOLOHH_00935 and NOLOHH_00940 overlap by 20 nucleotides
NOLOHH_00925: mnmH - tRNA 2-selenouridine(34) synthase MnmH, at 71,728 to 72,822
mnmH
NOLOHH_00930: NOLOHH_00930 - Transposase (Identified by ISEscan HMM), at 72,938 to 73,336
_00930
NOLOHH_00935: NOLOHH_00935 - Protein, at 73,823 to 74,314
_00935
NOLOHH_00940: NOLOHH_00940 - RHS repeat protein, at 74,295 to 75,005
_00940
Position (kb) 72
73
74 Strain fitness (log2 ratio) -2
-1
0
1
2 at 71.964 kb on + strand, within mnmH at 71.965 kb on - strand, within mnmH at 71.967 kb on - strand, within mnmH at 71.967 kb on - strand, within mnmH at 72.006 kb on + strand, within mnmH at 72.006 kb on + strand, within mnmH at 72.006 kb on + strand, within mnmH at 72.006 kb on + strand, within mnmH at 72.007 kb on - strand, within mnmH at 72.007 kb on - strand, within mnmH at 72.042 kb on + strand, within mnmH at 72.042 kb on + strand, within mnmH at 72.042 kb on + strand, within mnmH at 72.043 kb on - strand, within mnmH at 72.043 kb on - strand, within mnmH at 72.043 kb on - strand, within mnmH at 72.043 kb on - strand, within mnmH at 72.043 kb on - strand, within mnmH at 72.100 kb on + strand, within mnmH at 72.101 kb on - strand, within mnmH at 72.102 kb on + strand, within mnmH at 72.102 kb on + strand, within mnmH at 72.158 kb on + strand, within mnmH at 72.177 kb on + strand, within mnmH at 72.200 kb on + strand, within mnmH at 72.275 kb on + strand, within mnmH at 72.329 kb on + strand, within mnmH at 72.453 kb on - strand, within mnmH at 72.532 kb on + strand, within mnmH at 72.568 kb on + strand, within mnmH at 72.611 kb on + strand, within mnmH at 72.711 kb on - strand, within mnmH at 72.722 kb on - strand at 72.737 kb on - strand at 72.737 kb on - strand at 72.832 kb on + strand at 72.832 kb on + strand at 72.832 kb on + strand at 72.832 kb on + strand at 72.833 kb on - strand at 72.833 kb on - strand at 72.838 kb on + strand at 72.947 kb on - strand at 73.049 kb on - strand, within NOLOHH_00930 at 73.129 kb on + strand, within NOLOHH_00930 at 73.173 kb on - strand, within NOLOHH_00930 at 73.239 kb on + strand, within NOLOHH_00930 at 73.318 kb on - strand at 73.334 kb on + strand at 73.344 kb on + strand at 73.345 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 71,964 + mnmH NOLOHH_00925 0.22 +1.0 71,965 - mnmH NOLOHH_00925 0.22 +1.2 71,967 - mnmH NOLOHH_00925 0.22 +0.5 71,967 - mnmH NOLOHH_00925 0.22 -0.1 72,006 + mnmH NOLOHH_00925 0.25 -1.1 72,006 + mnmH NOLOHH_00925 0.25 -0.6 72,006 + mnmH NOLOHH_00925 0.25 +1.8 72,006 + mnmH NOLOHH_00925 0.25 +0.5 72,007 - mnmH NOLOHH_00925 0.25 +0.5 72,007 - mnmH NOLOHH_00925 0.25 -0.5 72,042 + mnmH NOLOHH_00925 0.29 +1.5 72,042 + mnmH NOLOHH_00925 0.29 +0.6 72,042 + mnmH NOLOHH_00925 0.29 -0.5 72,043 - mnmH NOLOHH_00925 0.29 +0.0 72,043 - mnmH NOLOHH_00925 0.29 -0.3 72,043 - mnmH NOLOHH_00925 0.29 +0.5 72,043 - mnmH NOLOHH_00925 0.29 +0.3 72,043 - mnmH NOLOHH_00925 0.29 +0.0 72,100 + mnmH NOLOHH_00925 0.34 -0.3 72,101 - mnmH NOLOHH_00925 0.34 -0.0 72,102 + mnmH NOLOHH_00925 0.34 +0.3 72,102 + mnmH NOLOHH_00925 0.34 +0.5 72,158 + mnmH NOLOHH_00925 0.39 +0.5 72,177 + mnmH NOLOHH_00925 0.41 -0.9 72,200 + mnmH NOLOHH_00925 0.43 +0.1 72,275 + mnmH NOLOHH_00925 0.50 -0.3 72,329 + mnmH NOLOHH_00925 0.55 +0.9 72,453 - mnmH NOLOHH_00925 0.66 +1.2 72,532 + mnmH NOLOHH_00925 0.73 +0.5 72,568 + mnmH NOLOHH_00925 0.77 -2.1 72,611 + mnmH NOLOHH_00925 0.81 -0.1 72,711 - mnmH NOLOHH_00925 0.90 +0.8 72,722 - +0.6 72,737 - -0.3 72,737 - +1.5 72,832 + -0.5 72,832 + -0.0 72,832 + -1.0 72,832 + +0.0 72,833 - -0.2 72,833 - -0.5 72,838 + -1.5 72,947 - +1.0 73,049 - NOLOHH_00930 0.28 +0.5 73,129 + NOLOHH_00930 0.48 +0.2 73,173 - NOLOHH_00930 0.59 +1.2 73,239 + NOLOHH_00930 0.75 +0.7 73,318 - -0.1 73,334 + +0.6 73,344 + -0.1 73,345 - -0.5
Or see this region's nucleotide sequence