Strain Fitness in Escherichia coli ECOR27 around NOLOHH_00740

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_00720 and NOLOHH_00725 overlap by 8 nucleotidesNOLOHH_00725 and NOLOHH_00730 overlap by 4 nucleotidesNOLOHH_00730 and NOLOHH_00735 overlap by 4 nucleotidesNOLOHH_00735 and dksA are separated by 98 nucleotidesdksA and NOLOHH_00745 are separated by 47 nucleotidesNOLOHH_00745 and intD are separated by 198 nucleotides NOLOHH_00720: NOLOHH_00720 - cruciferin, at 35,272 to 35,433 _00720 NOLOHH_00725: NOLOHH_00725 - phage N-6-adenine-methyltransferase, at 35,426 to 35,983 _00725 NOLOHH_00730: NOLOHH_00730 - DUF1382 domain-containing protein, at 35,980 to 36,063 _00730 NOLOHH_00735: NOLOHH_00735 - Cell division protein ZapA, at 36,060 to 36,275 _00735 NOLOHH_00740: dksA - conjugal transfer protein TraR, at 36,374 to 36,592 dksA NOLOHH_00745: NOLOHH_00745 - hypothetical protein, at 36,640 to 36,918 _00745 NOLOHH_00750: intD - Prophage integrase IntD, at 37,117 to 38,280 intD Position (kb) 36 37Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 35.449 kb on + strandat 35.506 kb on + strand, within NOLOHH_00725at 35.559 kb on + strand, within NOLOHH_00725at 35.559 kb on + strand, within NOLOHH_00725at 35.560 kb on - strand, within NOLOHH_00725at 35.560 kb on - strand, within NOLOHH_00725at 35.560 kb on - strand, within NOLOHH_00725at 35.572 kb on + strand, within NOLOHH_00725at 35.625 kb on - strand, within NOLOHH_00725at 35.636 kb on + strand, within NOLOHH_00725at 35.637 kb on - strand, within NOLOHH_00725at 35.637 kb on - strand, within NOLOHH_00725at 35.657 kb on + strand, within NOLOHH_00725at 35.657 kb on + strand, within NOLOHH_00725at 35.658 kb on - strand, within NOLOHH_00725at 35.665 kb on + strand, within NOLOHH_00725at 35.665 kb on + strand, within NOLOHH_00725at 35.665 kb on + strand, within NOLOHH_00725at 35.666 kb on - strand, within NOLOHH_00725at 35.666 kb on - strand, within NOLOHH_00725at 35.724 kb on + strand, within NOLOHH_00725at 35.724 kb on + strand, within NOLOHH_00725at 35.725 kb on - strand, within NOLOHH_00725at 35.725 kb on - strand, within NOLOHH_00725at 35.730 kb on + strand, within NOLOHH_00725at 35.821 kb on + strand, within NOLOHH_00725at 35.822 kb on - strand, within NOLOHH_00725at 35.858 kb on - strand, within NOLOHH_00725at 35.858 kb on - strand, within NOLOHH_00725at 35.861 kb on - strand, within NOLOHH_00725at 35.879 kb on - strand, within NOLOHH_00725at 35.879 kb on - strand, within NOLOHH_00725at 35.914 kb on + strand, within NOLOHH_00725at 35.914 kb on + strand, within NOLOHH_00725at 35.915 kb on - strand, within NOLOHH_00725at 36.020 kb on + strand, within NOLOHH_00730at 36.034 kb on - strand, within NOLOHH_00730at 36.034 kb on - strand, within NOLOHH_00730at 36.176 kb on - strand, within NOLOHH_00735at 36.176 kb on - strand, within NOLOHH_00735at 36.179 kb on + strand, within NOLOHH_00735at 36.179 kb on + strand, within NOLOHH_00735at 36.179 kb on + strand, within NOLOHH_00735at 36.179 kb on + strand, within NOLOHH_00735at 36.180 kb on - strand, within NOLOHH_00735at 36.180 kb on - strand, within NOLOHH_00735at 36.180 kb on - strand, within NOLOHH_00735at 36.229 kb on + strand, within NOLOHH_00735at 36.229 kb on + strand, within NOLOHH_00735at 36.230 kb on - strand, within NOLOHH_00735at 36.250 kb on + strand, within NOLOHH_00735at 36.304 kb on - strandat 36.344 kb on - strandat 36.452 kb on + strand, within dksAat 36.568 kb on + strand, within dksAat 36.569 kb on - strand, within dksAat 36.670 kb on + strand, within NOLOHH_00745at 36.670 kb on + strand, within NOLOHH_00745at 36.671 kb on - strand, within NOLOHH_00745at 36.730 kb on + strand, within NOLOHH_00745at 36.730 kb on + strand, within NOLOHH_00745at 36.753 kb on + strand, within NOLOHH_00745at 36.754 kb on - strand, within NOLOHH_00745at 36.775 kb on - strand, within NOLOHH_00745at 36.775 kb on - strand, within NOLOHH_00745at 36.849 kb on + strand, within NOLOHH_00745at 36.849 kb on + strand, within NOLOHH_00745at 36.849 kb on + strand, within NOLOHH_00745at 36.885 kb on + strand, within NOLOHH_00745at 36.886 kb on - strand, within NOLOHH_00745at 36.886 kb on - strand, within NOLOHH_00745at 36.900 kb on - strandat 36.934 kb on + strandat 36.935 kb on - strandat 37.072 kb on + strandat 37.073 kb on - strandat 37.101 kb on + strandat 37.142 kb on + strandat 37.142 kb on + strandat 37.143 kb on - strandat 37.147 kb on + strandat 37.148 kb on - strandat 37.308 kb on - strand, within intDat 37.392 kb on + strand, within intDat 37.394 kb on + strand, within intDat 37.395 kb on - strand, within intDat 37.401 kb on + strand, within intDat 37.401 kb on + strand, within intDat 37.407 kb on + strand, within intDat 37.437 kb on - strand, within intDat 37.523 kb on - strand, within intDat 37.575 kb on - strand, within intD

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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35,449 + +1.8
35,506 + NOLOHH_00725 0.14 -1.5
35,559 + NOLOHH_00725 0.24 +1.0
35,559 + NOLOHH_00725 0.24 +0.5
35,560 - NOLOHH_00725 0.24 +0.5
35,560 - NOLOHH_00725 0.24 -1.9
35,560 - NOLOHH_00725 0.24 +1.2
35,572 + NOLOHH_00725 0.26 +0.9
35,625 - NOLOHH_00725 0.36 -0.0
35,636 + NOLOHH_00725 0.38 +0.2
35,637 - NOLOHH_00725 0.38 +0.1
35,637 - NOLOHH_00725 0.38 -0.5
35,657 + NOLOHH_00725 0.41 +0.3
35,657 + NOLOHH_00725 0.41 +0.2
35,658 - NOLOHH_00725 0.42 -0.5
35,665 + NOLOHH_00725 0.43 -1.0
35,665 + NOLOHH_00725 0.43 -0.3
35,665 + NOLOHH_00725 0.43 +0.8
35,666 - NOLOHH_00725 0.43 -0.5
35,666 - NOLOHH_00725 0.43 -1.3
35,724 + NOLOHH_00725 0.53 -0.5
35,724 + NOLOHH_00725 0.53 +0.7
35,725 - NOLOHH_00725 0.54 -0.5
35,725 - NOLOHH_00725 0.54 +0.5
35,730 + NOLOHH_00725 0.54 -1.4
35,821 + NOLOHH_00725 0.71 +0.5
35,822 - NOLOHH_00725 0.71 +0.2
35,858 - NOLOHH_00725 0.77 -0.8
35,858 - NOLOHH_00725 0.77 -0.5
35,861 - NOLOHH_00725 0.78 -0.3
35,879 - NOLOHH_00725 0.81 +0.8
35,879 - NOLOHH_00725 0.81 +0.1
35,914 + NOLOHH_00725 0.87 -0.4
35,914 + NOLOHH_00725 0.87 +2.0
35,915 - NOLOHH_00725 0.88 +1.5
36,020 + NOLOHH_00730 0.48 +0.8
36,034 - NOLOHH_00730 0.64 +1.3
36,034 - NOLOHH_00730 0.64 +0.1
36,176 - NOLOHH_00735 0.54 +1.0
36,176 - NOLOHH_00735 0.54 -0.1
36,179 + NOLOHH_00735 0.55 -0.5
36,179 + NOLOHH_00735 0.55 +0.3
36,179 + NOLOHH_00735 0.55 -3.9
36,179 + NOLOHH_00735 0.55 -2.5
36,180 - NOLOHH_00735 0.56 +0.1
36,180 - NOLOHH_00735 0.56 +0.8
36,180 - NOLOHH_00735 0.56 +0.5
36,229 + NOLOHH_00735 0.78 +0.5
36,229 + NOLOHH_00735 0.78 -0.1
36,230 - NOLOHH_00735 0.79 -0.1
36,250 + NOLOHH_00735 0.88 -1.4
36,304 - -1.4
36,344 - -0.8
36,452 + dksA NOLOHH_00740 0.36 -0.5
36,568 + dksA NOLOHH_00740 0.89 -0.0
36,569 - dksA NOLOHH_00740 0.89 +0.9
36,670 + NOLOHH_00745 0.11 +0.7
36,670 + NOLOHH_00745 0.11 +0.5
36,671 - NOLOHH_00745 0.11 +0.2
36,730 + NOLOHH_00745 0.32 -0.5
36,730 + NOLOHH_00745 0.32 -1.4
36,753 + NOLOHH_00745 0.41 +0.2
36,754 - NOLOHH_00745 0.41 -1.1
36,775 - NOLOHH_00745 0.48 +0.5
36,775 - NOLOHH_00745 0.48 -0.3
36,849 + NOLOHH_00745 0.75 -0.0
36,849 + NOLOHH_00745 0.75 +0.9
36,849 + NOLOHH_00745 0.75 -0.1
36,885 + NOLOHH_00745 0.88 +0.2
36,886 - NOLOHH_00745 0.88 -0.5
36,886 - NOLOHH_00745 0.88 -1.9
36,900 - -0.5
36,934 + -0.5
36,935 - +0.5
37,072 + +0.5
37,073 - -1.1
37,101 + +0.4
37,142 + +0.5
37,142 + -1.0
37,143 - -0.8
37,147 + +1.0
37,148 - -0.7
37,308 - intD NOLOHH_00750 0.16 -0.1
37,392 + intD NOLOHH_00750 0.24 +1.5
37,394 + intD NOLOHH_00750 0.24 -0.8
37,395 - intD NOLOHH_00750 0.24 -0.3
37,401 + intD NOLOHH_00750 0.24 +0.5
37,401 + intD NOLOHH_00750 0.24 -0.3
37,407 + intD NOLOHH_00750 0.25 +0.5
37,437 - intD NOLOHH_00750 0.27 -0.5
37,523 - intD NOLOHH_00750 0.35 +0.3
37,575 - intD NOLOHH_00750 0.39 +2.5

Or see this region's nucleotide sequence