Strain Fitness in Escherichia coli ECOR27 around NOLOHH_00700

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_00695 and NOLOHH_00700 are separated by 500 nucleotidesNOLOHH_00700 and gam are separated by 76 nucleotidesgam and bet are separated by 5 nucleotides NOLOHH_00695: NOLOHH_00695 - DUF3037 domain-containing protein, at 31,921 to 32,727 _00695 NOLOHH_00700: NOLOHH_00700 - cell division inhibitor protein, at 33,228 to 33,434 _00700 NOLOHH_00705: gam - Host-nuclease inhibitor protein gam, at 33,511 to 33,807 gam NOLOHH_00710: bet - phage recombination protein Bet, at 33,813 to 34,598 bet Position (kb) 33 34Strain fitness (log2 ratio) -2 -1 0 1 2at 33.013 kb on - strandat 33.111 kb on - strandat 33.111 kb on - strandat 33.111 kb on - strandat 33.113 kb on - strandat 33.139 kb on + strandat 33.140 kb on - strandat 33.140 kb on - strandat 33.140 kb on - strandat 33.140 kb on - strandat 33.140 kb on - strandat 33.140 kb on - strandat 33.144 kb on - strandat 33.190 kb on + strandat 33.191 kb on - strandat 33.191 kb on - strandat 33.191 kb on - strandat 33.191 kb on - strandat 33.192 kb on + strandat 33.192 kb on + strandat 33.192 kb on + strandat 33.192 kb on + strandat 33.193 kb on - strandat 33.193 kb on - strandat 33.212 kb on - strandat 33.243 kb on + strandat 33.308 kb on + strand, within NOLOHH_00700at 33.372 kb on + strand, within NOLOHH_00700at 33.372 kb on + strand, within NOLOHH_00700at 33.372 kb on + strand, within NOLOHH_00700at 33.372 kb on + strand, within NOLOHH_00700at 33.373 kb on - strand, within NOLOHH_00700at 33.373 kb on - strand, within NOLOHH_00700at 33.373 kb on - strand, within NOLOHH_00700at 33.373 kb on - strand, within NOLOHH_00700at 33.373 kb on - strand, within NOLOHH_00700at 33.520 kb on + strandat 33.650 kb on + strand, within gamat 33.650 kb on + strand, within gamat 33.805 kb on + strandat 33.805 kb on + strandat 33.806 kb on - strandat 33.818 kb on + strandat 33.917 kb on + strand, within betat 33.917 kb on + strand, within betat 33.918 kb on - strand, within betat 34.017 kb on - strand, within betat 34.124 kb on + strand, within betat 34.124 kb on + strand, within betat 34.124 kb on + strand, within betat 34.125 kb on - strand, within betat 34.316 kb on + strand, within betat 34.320 kb on + strand, within betat 34.320 kb on + strand, within betat 34.321 kb on - strand, within betat 34.362 kb on + strand, within betat 34.362 kb on + strand, within betat 34.362 kb on + strand, within betat 34.363 kb on - strand, within betat 34.363 kb on - strand, within betat 34.363 kb on - strand, within betat 34.363 kb on - strand, within bet

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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33,013 - -1.4
33,111 - -1.1
33,111 - +0.5
33,111 - +0.1
33,113 - -0.4
33,139 + -1.1
33,140 - +0.5
33,140 - +0.0
33,140 - +2.0
33,140 - -0.1
33,140 - -1.1
33,140 - -0.1
33,144 - +0.5
33,190 + -0.5
33,191 - -1.7
33,191 - +1.0
33,191 - -0.4
33,191 - +0.2
33,192 + +0.2
33,192 + -0.5
33,192 + +0.3
33,192 + +0.5
33,193 - +1.5
33,193 - +2.0
33,212 - -1.1
33,243 + -1.4
33,308 + NOLOHH_00700 0.39 +0.3
33,372 + NOLOHH_00700 0.70 -0.4
33,372 + NOLOHH_00700 0.70 +1.7
33,372 + NOLOHH_00700 0.70 +0.2
33,372 + NOLOHH_00700 0.70 -1.5
33,373 - NOLOHH_00700 0.70 -0.5
33,373 - NOLOHH_00700 0.70 -0.1
33,373 - NOLOHH_00700 0.70 +0.2
33,373 - NOLOHH_00700 0.70 -1.9
33,373 - NOLOHH_00700 0.70 +0.9
33,520 + +1.2
33,650 + gam NOLOHH_00705 0.47 +0.5
33,650 + gam NOLOHH_00705 0.47 -0.5
33,805 + -1.3
33,805 + -0.0
33,806 - -0.4
33,818 + -0.1
33,917 + bet NOLOHH_00710 0.13 -1.5
33,917 + bet NOLOHH_00710 0.13 +0.8
33,918 - bet NOLOHH_00710 0.13 +0.5
34,017 - bet NOLOHH_00710 0.26 -0.5
34,124 + bet NOLOHH_00710 0.40 +0.2
34,124 + bet NOLOHH_00710 0.40 -1.1
34,124 + bet NOLOHH_00710 0.40 +0.6
34,125 - bet NOLOHH_00710 0.40 +0.1
34,316 + bet NOLOHH_00710 0.64 -1.1
34,320 + bet NOLOHH_00710 0.65 -1.1
34,320 + bet NOLOHH_00710 0.65 +0.9
34,321 - bet NOLOHH_00710 0.65 +1.5
34,362 + bet NOLOHH_00710 0.70 +0.5
34,362 + bet NOLOHH_00710 0.70 -0.3
34,362 + bet NOLOHH_00710 0.70 +0.2
34,363 - bet NOLOHH_00710 0.70 -1.4
34,363 - bet NOLOHH_00710 0.70 +0.5
34,363 - bet NOLOHH_00710 0.70 -0.4
34,363 - bet NOLOHH_00710 0.70 -0.5

Or see this region's nucleotide sequence