Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_00670 and NOLOHH_00675 are separated by 11 nucleotides NOLOHH_00675 and NOLOHH_00680 are separated by 30 nucleotides NOLOHH_00680 and NOLOHH_00685 are separated by 317 nucleotides NOLOHH_00685 and NOLOHH_00690 are separated by 46 nucleotides
NOLOHH_00670: NOLOHH_00670 - Replication protein, at 28,413 to 29,417
_00670
NOLOHH_00675: NOLOHH_00675 - regulator, at 29,429 to 29,968
_00675
NOLOHH_00680: NOLOHH_00680 - transcriptional regulator, at 29,999 to 30,226
_00680
NOLOHH_00685: NOLOHH_00685 - HTH cro/C1-type domain-containing protein, at 30,544 to 31,029
_00685
NOLOHH_00690: NOLOHH_00690 - Phage-like protein, at 31,076 to 31,924
_00690
Position (kb) 29
30
31 Strain fitness (log2 ratio) -2
-1
0
1
2 at 29.016 kb on - strand, within NOLOHH_00670 at 29.153 kb on + strand, within NOLOHH_00670 at 29.161 kb on + strand, within NOLOHH_00670 at 29.255 kb on + strand, within NOLOHH_00670 at 29.255 kb on + strand, within NOLOHH_00670 at 29.255 kb on + strand, within NOLOHH_00670 at 29.255 kb on + strand, within NOLOHH_00670 at 29.322 kb on + strand at 29.322 kb on + strand at 29.432 kb on + strand at 29.432 kb on + strand at 29.613 kb on + strand, within NOLOHH_00675 at 29.613 kb on + strand, within NOLOHH_00675 at 29.613 kb on + strand, within NOLOHH_00675 at 29.613 kb on + strand, within NOLOHH_00675 at 29.952 kb on + strand at 29.952 kb on + strand at 29.956 kb on + strand at 29.956 kb on + strand at 29.956 kb on + strand at 29.957 kb on - strand at 29.957 kb on - strand at 29.968 kb on + strand at 29.968 kb on + strand at 29.968 kb on + strand at 29.968 kb on + strand at 30.013 kb on + strand at 30.061 kb on + strand, within NOLOHH_00680 at 30.095 kb on + strand, within NOLOHH_00680 at 30.161 kb on + strand, within NOLOHH_00680 at 30.161 kb on + strand, within NOLOHH_00680 at 30.190 kb on + strand, within NOLOHH_00680 at 30.193 kb on + strand, within NOLOHH_00680 at 30.322 kb on + strand at 31.014 kb on + strand at 31.047 kb on - strand at 31.225 kb on + strand, within NOLOHH_00690
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 29,016 - NOLOHH_00670 0.60 +0.7 29,153 + NOLOHH_00670 0.74 +0.7 29,161 + NOLOHH_00670 0.74 +0.5 29,255 + NOLOHH_00670 0.84 +0.5 29,255 + NOLOHH_00670 0.84 +1.5 29,255 + NOLOHH_00670 0.84 +0.0 29,255 + NOLOHH_00670 0.84 +0.9 29,322 + -0.3 29,322 + -0.8 29,432 + -1.1 29,432 + +0.5 29,613 + NOLOHH_00675 0.34 +0.7 29,613 + NOLOHH_00675 0.34 -0.5 29,613 + NOLOHH_00675 0.34 +0.7 29,613 + NOLOHH_00675 0.34 +1.3 29,952 + +0.8 29,952 + -1.5 29,956 + +0.2 29,956 + +0.7 29,956 + +2.3 29,957 - +0.1 29,957 - +1.0 29,968 + +0.9 29,968 + -1.5 29,968 + +0.0 29,968 + -1.1 30,013 + +0.8 30,061 + NOLOHH_00680 0.27 -1.4 30,095 + NOLOHH_00680 0.42 +0.5 30,161 + NOLOHH_00680 0.71 -0.3 30,161 + NOLOHH_00680 0.71 -0.7 30,190 + NOLOHH_00680 0.84 +0.0 30,193 + NOLOHH_00680 0.85 -1.9 30,322 + -0.5 31,014 + -1.7 31,047 - +0.5 31,225 + NOLOHH_00690 0.18 +0.2
Or see this region's nucleotide sequence