Strain Fitness in Escherichia coli ECOR27 around NOLOHH_00650

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_00640 and ybcN overlap by 1 nucleotidesybcN and NOLOHH_00650 are separated by 537 nucleotidesNOLOHH_00650 and NOLOHH_00655 are separated by 256 nucleotides NOLOHH_00640: NOLOHH_00640 - NINE Protein, at 24,830 to 25,000 _00640 NOLOHH_00645: ybcN - DNA base-flipping protein YbcN, at 25,000 to 25,455 ybcN NOLOHH_00650: NOLOHH_00650 - hypothetical protein, at 25,993 to 26,127 _00650 NOLOHH_00655: NOLOHH_00655 - DUF4145 domain-containing protein, at 26,384 to 27,136 _00655 Position (kb) 25 26 27Strain fitness (log2 ratio) -2 -1 0 1 2at 24.994 kb on + strandat 24.995 kb on - strandat 25.068 kb on + strand, within ybcNat 25.093 kb on - strand, within ybcNat 25.093 kb on - strand, within ybcNat 25.106 kb on + strand, within ybcNat 25.106 kb on + strand, within ybcNat 25.106 kb on + strand, within ybcNat 25.106 kb on + strand, within ybcNat 25.106 kb on + strand, within ybcNat 25.106 kb on + strand, within ybcNat 25.106 kb on + strand, within ybcNat 25.106 kb on + strand, within ybcNat 25.107 kb on - strand, within ybcNat 25.107 kb on - strand, within ybcNat 25.107 kb on - strand, within ybcNat 25.107 kb on - strand, within ybcNat 25.208 kb on + strand, within ybcNat 25.208 kb on + strand, within ybcNat 25.208 kb on + strand, within ybcNat 25.209 kb on - strand, within ybcNat 25.274 kb on + strand, within ybcNat 25.292 kb on + strand, within ybcNat 25.347 kb on + strand, within ybcNat 25.383 kb on - strand, within ybcNat 25.426 kb on + strandat 25.426 kb on + strandat 25.426 kb on + strandat 25.427 kb on - strandat 25.544 kb on - strandat 25.544 kb on - strandat 25.608 kb on + strandat 25.609 kb on - strandat 25.609 kb on - strandat 25.609 kb on - strandat 25.641 kb on + strandat 25.652 kb on - strandat 25.688 kb on - strandat 25.763 kb on - strandat 25.764 kb on + strandat 25.765 kb on - strandat 25.765 kb on - strandat 25.765 kb on - strandat 25.769 kb on - strandat 25.777 kb on + strandat 25.827 kb on + strandat 25.832 kb on - strandat 25.961 kb on - strandat 25.961 kb on - strandat 25.978 kb on + strandat 26.054 kb on + strand, within NOLOHH_00650at 26.095 kb on - strand, within NOLOHH_00650at 26.145 kb on - strandat 26.274 kb on - strandat 26.290 kb on + strandat 26.290 kb on + strandat 26.291 kb on - strandat 26.291 kb on - strandat 26.294 kb on + strandat 26.294 kb on + strandat 26.357 kb on + strandat 26.403 kb on + strandat 26.425 kb on + strandat 26.432 kb on - strandat 26.432 kb on - strandat 26.432 kb on - strandat 26.498 kb on - strand, within NOLOHH_00655at 26.518 kb on + strand, within NOLOHH_00655at 26.591 kb on - strand, within NOLOHH_00655at 26.599 kb on - strand, within NOLOHH_00655at 26.631 kb on - strand, within NOLOHH_00655at 26.631 kb on - strand, within NOLOHH_00655at 26.634 kb on - strand, within NOLOHH_00655at 26.634 kb on - strand, within NOLOHH_00655at 26.634 kb on - strand, within NOLOHH_00655at 26.664 kb on - strand, within NOLOHH_00655at 26.664 kb on - strand, within NOLOHH_00655at 26.694 kb on - strand, within NOLOHH_00655at 26.748 kb on - strand, within NOLOHH_00655at 26.768 kb on + strand, within NOLOHH_00655at 26.769 kb on - strand, within NOLOHH_00655at 26.769 kb on - strand, within NOLOHH_00655at 26.769 kb on - strand, within NOLOHH_00655at 26.824 kb on - strand, within NOLOHH_00655at 26.824 kb on - strand, within NOLOHH_00655at 26.828 kb on - strand, within NOLOHH_00655at 26.828 kb on - strand, within NOLOHH_00655at 26.848 kb on - strand, within NOLOHH_00655at 26.958 kb on - strand, within NOLOHH_00655at 26.958 kb on - strand, within NOLOHH_00655at 26.987 kb on + strand, within NOLOHH_00655at 26.988 kb on - strand, within NOLOHH_00655at 27.067 kb on + strandat 27.068 kb on - strandat 27.068 kb on - strandat 27.118 kb on - strandat 27.118 kb on - strandat 27.122 kb on + strandat 27.122 kb on + strandat 27.127 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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24,994 + -1.5
24,995 - -1.5
25,068 + ybcN NOLOHH_00645 0.15 -1.1
25,093 - ybcN NOLOHH_00645 0.20 -1.1
25,093 - ybcN NOLOHH_00645 0.20 +0.5
25,106 + ybcN NOLOHH_00645 0.23 -0.5
25,106 + ybcN NOLOHH_00645 0.23 -0.5
25,106 + ybcN NOLOHH_00645 0.23 -1.1
25,106 + ybcN NOLOHH_00645 0.23 +0.1
25,106 + ybcN NOLOHH_00645 0.23 +0.5
25,106 + ybcN NOLOHH_00645 0.23 -0.1
25,106 + ybcN NOLOHH_00645 0.23 +1.0
25,106 + ybcN NOLOHH_00645 0.23 +0.5
25,107 - ybcN NOLOHH_00645 0.23 -0.9
25,107 - ybcN NOLOHH_00645 0.23 -0.4
25,107 - ybcN NOLOHH_00645 0.23 -0.4
25,107 - ybcN NOLOHH_00645 0.23 -1.3
25,208 + ybcN NOLOHH_00645 0.46 -1.5
25,208 + ybcN NOLOHH_00645 0.46 -0.1
25,208 + ybcN NOLOHH_00645 0.46 +1.0
25,209 - ybcN NOLOHH_00645 0.46 -2.5
25,274 + ybcN NOLOHH_00645 0.60 +2.0
25,292 + ybcN NOLOHH_00645 0.64 -0.1
25,347 + ybcN NOLOHH_00645 0.76 -0.5
25,383 - ybcN NOLOHH_00645 0.84 +0.5
25,426 + -1.1
25,426 + +0.5
25,426 + +0.5
25,427 - -1.9
25,544 - -0.5
25,544 - +0.5
25,608 + -1.4
25,609 - -1.5
25,609 - -0.2
25,609 - -0.2
25,641 + -0.1
25,652 - +1.9
25,688 - -0.3
25,763 - -1.7
25,764 + +0.7
25,765 - +0.8
25,765 - -0.2
25,765 - -0.1
25,769 - +0.0
25,777 + -1.1
25,827 + +0.5
25,832 - +0.6
25,961 - +0.9
25,961 - -0.1
25,978 + +1.9
26,054 + NOLOHH_00650 0.45 +1.8
26,095 - NOLOHH_00650 0.76 -0.1
26,145 - -0.1
26,274 - -0.7
26,290 + +0.5
26,290 + -0.1
26,291 - -0.0
26,291 - -0.3
26,294 + -0.9
26,294 + -0.3
26,357 + +0.5
26,403 + -0.3
26,425 + -0.9
26,432 - -0.5
26,432 - +0.9
26,432 - +0.5
26,498 - NOLOHH_00655 0.15 -0.2
26,518 + NOLOHH_00655 0.18 -0.5
26,591 - NOLOHH_00655 0.27 +0.3
26,599 - NOLOHH_00655 0.29 -0.8
26,631 - NOLOHH_00655 0.33 +0.5
26,631 - NOLOHH_00655 0.33 +0.2
26,634 - NOLOHH_00655 0.33 +0.7
26,634 - NOLOHH_00655 0.33 +0.2
26,634 - NOLOHH_00655 0.33 -0.9
26,664 - NOLOHH_00655 0.37 +0.0
26,664 - NOLOHH_00655 0.37 +0.5
26,694 - NOLOHH_00655 0.41 +0.5
26,748 - NOLOHH_00655 0.48 -0.4
26,768 + NOLOHH_00655 0.51 +0.5
26,769 - NOLOHH_00655 0.51 +0.5
26,769 - NOLOHH_00655 0.51 +0.3
26,769 - NOLOHH_00655 0.51 +0.5
26,824 - NOLOHH_00655 0.58 +0.5
26,824 - NOLOHH_00655 0.58 -0.5
26,828 - NOLOHH_00655 0.59 -1.3
26,828 - NOLOHH_00655 0.59 -0.2
26,848 - NOLOHH_00655 0.62 -0.7
26,958 - NOLOHH_00655 0.76 +0.5
26,958 - NOLOHH_00655 0.76 +0.2
26,987 + NOLOHH_00655 0.80 +0.9
26,988 - NOLOHH_00655 0.80 +0.5
27,067 + +1.5
27,068 - -1.1
27,068 - +0.1
27,118 - +0.1
27,118 - +0.2
27,122 + -0.5
27,122 + +2.0
27,127 + +0.7

Or see this region's nucleotide sequence