Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_00340 and NOLOHH_00345 are separated by 15 nucleotides NOLOHH_00345 and NOLOHH_00350 overlap by 4 nucleotides NOLOHH_00350 and NOLOHH_00355 are separated by 111 nucleotides
NOLOHH_00340: NOLOHH_00340 - ATPase, at 14,339 to 17,074
_00340
NOLOHH_00345: NOLOHH_00345 - Conjugal transfer protein, at 17,090 to 17,377
_00345
NOLOHH_00350: NOLOHH_00350 - TriA protein, at 17,374 to 17,976
_00350
NOLOHH_00355: NOLOHH_00355 - hypothetical protein, at 18,088 to 18,537
_00355
Position (kb) 17
18 Strain fitness (log2 ratio) -2
-1
0
1 at 16.402 kb on - strand, within NOLOHH_00340 at 16.530 kb on + strand, within NOLOHH_00340 at 16.703 kb on - strand, within NOLOHH_00340 at 16.704 kb on + strand, within NOLOHH_00340 at 16.804 kb on - strand at 16.928 kb on + strand at 17.089 kb on - strand at 17.195 kb on - strand, within NOLOHH_00345 at 17.393 kb on - strand at 17.464 kb on - strand, within NOLOHH_00350 at 17.467 kb on - strand, within NOLOHH_00350 at 17.835 kb on - strand, within NOLOHH_00350 at 17.869 kb on + strand, within NOLOHH_00350 at 17.870 kb on - strand, within NOLOHH_00350 at 17.924 kb on - strand at 17.957 kb on - strand at 17.957 kb on - strand at 18.020 kb on + strand at 18.537 kb on + strand at 18.559 kb on - strand at 18.563 kb on + strand at 18.566 kb on + strand at 18.575 kb on - strand at 18.638 kb on - strand at 18.638 kb on - strand at 18.729 kb on - strand at 18.821 kb on + strand at 18.822 kb on - strand at 18.912 kb on + strand at 18.912 kb on + strand at 18.941 kb on - strand at 18.941 kb on - strand at 18.941 kb on - strand at 18.945 kb on - strand at 18.945 kb on - strand at 18.945 kb on - strand at 18.976 kb on + strand at 18.976 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 16,402 - NOLOHH_00340 0.75 -0.0 16,530 + NOLOHH_00340 0.80 +0.3 16,703 - NOLOHH_00340 0.86 +1.1 16,704 + NOLOHH_00340 0.86 -0.4 16,804 - +0.3 16,928 + +0.3 17,089 - -0.1 17,195 - NOLOHH_00345 0.36 -0.5 17,393 - +0.3 17,464 - NOLOHH_00350 0.15 +0.1 17,467 - NOLOHH_00350 0.15 -0.8 17,835 - NOLOHH_00350 0.76 +0.8 17,869 + NOLOHH_00350 0.82 +0.4 17,870 - NOLOHH_00350 0.82 +0.3 17,924 - -0.4 17,957 - -0.4 17,957 - +0.5 18,020 + -1.9 18,537 + +0.8 18,559 - -0.5 18,563 + +0.4 18,566 + +0.2 18,575 - +0.9 18,638 - -0.2 18,638 - +0.3 18,729 - +0.3 18,821 + -0.1 18,822 - -0.1 18,912 + +0.2 18,912 + -0.4 18,941 - -0.5 18,941 - -1.0 18,941 - +1.2 18,945 - -1.0 18,945 - -0.2 18,945 - +0.2 18,976 + +0.9 18,976 + +0.5
Or see this region's nucleotide sequence