Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_00325 and NOLOHH_00330 are separated by 11 nucleotides NOLOHH_00330 and NOLOHH_00335 are separated by 10 nucleotides NOLOHH_00335 and NOLOHH_00340 are separated by 9 nucleotides NOLOHH_00340 and NOLOHH_00345 are separated by 15 nucleotides NOLOHH_00345 and NOLOHH_00350 overlap by 4 nucleotides
NOLOHH_00325: NOLOHH_00325 - conjugal transfer protein TrbL, at 12,317 to 13,375
_00325
NOLOHH_00330: NOLOHH_00330 - Eex protein, at 13,387 to 13,611
_00330
NOLOHH_00335: NOLOHH_00335 - type IV secretion system protein VirB5, at 13,622 to 14,329
_00335
NOLOHH_00340: NOLOHH_00340 - ATPase, at 14,339 to 17,074
_00340
NOLOHH_00345: NOLOHH_00345 - Conjugal transfer protein, at 17,090 to 17,377
_00345
NOLOHH_00350: NOLOHH_00350 - TriA protein, at 17,374 to 17,976
_00350
Position (kb) 14
15
16
17
18 Strain fitness (log2 ratio) -2
-1
0
1 at 13.388 kb on + strand at 13.423 kb on - strand, within NOLOHH_00330 at 13.459 kb on - strand, within NOLOHH_00330 at 13.525 kb on - strand, within NOLOHH_00330 at 13.526 kb on + strand, within NOLOHH_00330 at 13.526 kb on + strand, within NOLOHH_00330 at 13.581 kb on + strand, within NOLOHH_00330 at 13.582 kb on - strand, within NOLOHH_00330 at 13.603 kb on + strand at 13.611 kb on + strand at 13.611 kb on + strand at 13.612 kb on - strand at 13.628 kb on + strand at 13.751 kb on + strand, within NOLOHH_00335 at 13.810 kb on + strand, within NOLOHH_00335 at 13.844 kb on - strand, within NOLOHH_00335 at 13.874 kb on + strand, within NOLOHH_00335 at 13.875 kb on - strand, within NOLOHH_00335 at 13.924 kb on + strand, within NOLOHH_00335 at 13.938 kb on + strand, within NOLOHH_00335 at 13.938 kb on + strand, within NOLOHH_00335 at 13.939 kb on - strand, within NOLOHH_00335 at 13.939 kb on - strand, within NOLOHH_00335 at 13.939 kb on - strand, within NOLOHH_00335 at 14.029 kb on + strand, within NOLOHH_00335 at 14.029 kb on + strand, within NOLOHH_00335 at 14.029 kb on + strand, within NOLOHH_00335 at 14.092 kb on + strand, within NOLOHH_00335 at 14.092 kb on + strand, within NOLOHH_00335 at 14.092 kb on + strand, within NOLOHH_00335 at 14.093 kb on - strand, within NOLOHH_00335 at 14.093 kb on - strand, within NOLOHH_00335 at 14.116 kb on + strand, within NOLOHH_00335 at 14.117 kb on - strand, within NOLOHH_00335 at 14.155 kb on - strand, within NOLOHH_00335 at 14.155 kb on - strand, within NOLOHH_00335 at 14.155 kb on - strand, within NOLOHH_00335 at 14.176 kb on - strand, within NOLOHH_00335 at 14.240 kb on - strand, within NOLOHH_00335 at 14.359 kb on - strand at 14.359 kb on - strand at 14.395 kb on + strand at 14.397 kb on + strand at 14.484 kb on - strand at 14.537 kb on + strand at 14.610 kb on + strand at 14.660 kb on - strand, within NOLOHH_00340 at 14.682 kb on - strand, within NOLOHH_00340 at 14.739 kb on - strand, within NOLOHH_00340 at 14.767 kb on - strand, within NOLOHH_00340 at 14.825 kb on - strand, within NOLOHH_00340 at 14.882 kb on - strand, within NOLOHH_00340 at 14.960 kb on - strand, within NOLOHH_00340 at 15.055 kb on + strand, within NOLOHH_00340 at 15.168 kb on - strand, within NOLOHH_00340 at 15.292 kb on - strand, within NOLOHH_00340 at 15.371 kb on - strand, within NOLOHH_00340 at 15.431 kb on - strand, within NOLOHH_00340 at 15.438 kb on - strand, within NOLOHH_00340 at 15.554 kb on - strand, within NOLOHH_00340 at 15.573 kb on - strand, within NOLOHH_00340 at 15.574 kb on + strand, within NOLOHH_00340 at 15.616 kb on + strand, within NOLOHH_00340 at 15.708 kb on + strand, within NOLOHH_00340 at 15.709 kb on - strand, within NOLOHH_00340 at 15.743 kb on - strand, within NOLOHH_00340 at 15.774 kb on - strand, within NOLOHH_00340 at 15.791 kb on + strand, within NOLOHH_00340 at 15.791 kb on + strand, within NOLOHH_00340 at 15.793 kb on + strand, within NOLOHH_00340 at 15.793 kb on + strand, within NOLOHH_00340 at 15.794 kb on - strand, within NOLOHH_00340 at 15.794 kb on - strand, within NOLOHH_00340 at 15.817 kb on - strand, within NOLOHH_00340 at 15.817 kb on - strand, within NOLOHH_00340 at 15.831 kb on + strand, within NOLOHH_00340 at 15.837 kb on + strand, within NOLOHH_00340 at 15.838 kb on - strand, within NOLOHH_00340 at 15.840 kb on + strand, within NOLOHH_00340 at 15.841 kb on - strand, within NOLOHH_00340 at 15.853 kb on + strand, within NOLOHH_00340 at 15.979 kb on + strand, within NOLOHH_00340 at 15.980 kb on - strand, within NOLOHH_00340 at 16.006 kb on - strand, within NOLOHH_00340 at 16.051 kb on + strand, within NOLOHH_00340 at 16.070 kb on - strand, within NOLOHH_00340 at 16.131 kb on - strand, within NOLOHH_00340 at 16.206 kb on + strand, within NOLOHH_00340 at 16.255 kb on - strand, within NOLOHH_00340 at 16.402 kb on - strand, within NOLOHH_00340 at 16.530 kb on + strand, within NOLOHH_00340 at 16.703 kb on - strand, within NOLOHH_00340 at 16.704 kb on + strand, within NOLOHH_00340 at 16.804 kb on - strand at 16.928 kb on + strand at 17.089 kb on - strand at 17.195 kb on - strand, within NOLOHH_00345 at 17.393 kb on - strand at 17.464 kb on - strand, within NOLOHH_00350 at 17.467 kb on - strand, within NOLOHH_00350 at 17.835 kb on - strand, within NOLOHH_00350 at 17.869 kb on + strand, within NOLOHH_00350 at 17.870 kb on - strand, within NOLOHH_00350 at 17.924 kb on - strand at 17.957 kb on - strand at 17.957 kb on - strand at 18.020 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 13,388 + +0.5 13,423 - NOLOHH_00330 0.16 +0.1 13,459 - NOLOHH_00330 0.32 +0.0 13,525 - NOLOHH_00330 0.61 -1.2 13,526 + NOLOHH_00330 0.62 +1.0 13,526 + NOLOHH_00330 0.62 +0.8 13,581 + NOLOHH_00330 0.86 -0.2 13,582 - NOLOHH_00330 0.87 -0.3 13,603 + -0.0 13,611 + +0.2 13,611 + +0.6 13,612 - -0.1 13,628 + -0.1 13,751 + NOLOHH_00335 0.18 +0.3 13,810 + NOLOHH_00335 0.27 +0.8 13,844 - NOLOHH_00335 0.31 -0.1 13,874 + NOLOHH_00335 0.36 -0.3 13,875 - NOLOHH_00335 0.36 +0.1 13,924 + NOLOHH_00335 0.43 +0.7 13,938 + NOLOHH_00335 0.45 +0.3 13,938 + NOLOHH_00335 0.45 +0.0 13,939 - NOLOHH_00335 0.45 +0.6 13,939 - NOLOHH_00335 0.45 -0.1 13,939 - NOLOHH_00335 0.45 -0.0 14,029 + NOLOHH_00335 0.57 -0.5 14,029 + NOLOHH_00335 0.57 -0.3 14,029 + NOLOHH_00335 0.57 +0.7 14,092 + NOLOHH_00335 0.66 +0.6 14,092 + NOLOHH_00335 0.66 -0.0 14,092 + NOLOHH_00335 0.66 -0.4 14,093 - NOLOHH_00335 0.67 +0.3 14,093 - NOLOHH_00335 0.67 +0.0 14,116 + NOLOHH_00335 0.70 +0.5 14,117 - NOLOHH_00335 0.70 +0.5 14,155 - NOLOHH_00335 0.75 +0.7 14,155 - NOLOHH_00335 0.75 +0.2 14,155 - NOLOHH_00335 0.75 +0.3 14,176 - NOLOHH_00335 0.78 -1.8 14,240 - NOLOHH_00335 0.87 +0.5 14,359 - -0.1 14,359 - +0.1 14,395 + +0.1 14,397 + -0.3 14,484 - -1.0 14,537 + -0.4 14,610 + +0.0 14,660 - NOLOHH_00340 0.12 -0.2 14,682 - NOLOHH_00340 0.13 +0.3 14,739 - NOLOHH_00340 0.15 +0.7 14,767 - NOLOHH_00340 0.16 +0.8 14,825 - NOLOHH_00340 0.18 +0.6 14,882 - NOLOHH_00340 0.20 +0.4 14,960 - NOLOHH_00340 0.23 +1.0 15,055 + NOLOHH_00340 0.26 -0.1 15,168 - NOLOHH_00340 0.30 -0.6 15,292 - NOLOHH_00340 0.35 +0.1 15,371 - NOLOHH_00340 0.38 -0.2 15,431 - NOLOHH_00340 0.40 -0.1 15,438 - NOLOHH_00340 0.40 +1.3 15,554 - NOLOHH_00340 0.44 +1.0 15,573 - NOLOHH_00340 0.45 -0.7 15,574 + NOLOHH_00340 0.45 -0.0 15,616 + NOLOHH_00340 0.47 +0.7 15,708 + NOLOHH_00340 0.50 -1.0 15,709 - NOLOHH_00340 0.50 +0.3 15,743 - NOLOHH_00340 0.51 +0.2 15,774 - NOLOHH_00340 0.52 +0.3 15,791 + NOLOHH_00340 0.53 +0.6 15,791 + NOLOHH_00340 0.53 +0.3 15,793 + NOLOHH_00340 0.53 -0.9 15,793 + NOLOHH_00340 0.53 -0.8 15,794 - NOLOHH_00340 0.53 +0.0 15,794 - NOLOHH_00340 0.53 +0.3 15,817 - NOLOHH_00340 0.54 +0.2 15,817 - NOLOHH_00340 0.54 +0.0 15,831 + NOLOHH_00340 0.55 +0.5 15,837 + NOLOHH_00340 0.55 -0.0 15,838 - NOLOHH_00340 0.55 -0.3 15,840 + NOLOHH_00340 0.55 +0.6 15,841 - NOLOHH_00340 0.55 -2.0 15,853 + NOLOHH_00340 0.55 +0.8 15,979 + NOLOHH_00340 0.60 -0.3 15,980 - NOLOHH_00340 0.60 +0.1 16,006 - NOLOHH_00340 0.61 +0.5 16,051 + NOLOHH_00340 0.63 +0.3 16,070 - NOLOHH_00340 0.63 -0.3 16,131 - NOLOHH_00340 0.65 -0.7 16,206 + NOLOHH_00340 0.68 -0.4 16,255 - NOLOHH_00340 0.70 +0.9 16,402 - NOLOHH_00340 0.75 -0.0 16,530 + NOLOHH_00340 0.80 +0.3 16,703 - NOLOHH_00340 0.86 +1.1 16,704 + NOLOHH_00340 0.86 -0.4 16,804 - +0.3 16,928 + +0.3 17,089 - -0.1 17,195 - NOLOHH_00345 0.36 -0.5 17,393 - +0.3 17,464 - NOLOHH_00350 0.15 +0.1 17,467 - NOLOHH_00350 0.15 -0.8 17,835 - NOLOHH_00350 0.76 +0.8 17,869 + NOLOHH_00350 0.82 +0.4 17,870 - NOLOHH_00350 0.82 +0.3 17,924 - -0.4 17,957 - -0.4 17,957 - +0.5 18,020 + -1.9
Or see this region's nucleotide sequence