Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_00325 and NOLOHH_00330 are separated by 11 nucleotides NOLOHH_00330 and NOLOHH_00335 are separated by 10 nucleotides NOLOHH_00335 and NOLOHH_00340 are separated by 9 nucleotides
NOLOHH_00325: NOLOHH_00325 - conjugal transfer protein TrbL, at 12,317 to 13,375
_00325
NOLOHH_00330: NOLOHH_00330 - Eex protein, at 13,387 to 13,611
_00330
NOLOHH_00335: NOLOHH_00335 - type IV secretion system protein VirB5, at 13,622 to 14,329
_00335
NOLOHH_00340: NOLOHH_00340 - ATPase, at 14,339 to 17,074
_00340
Position (kb) 13
14
15 Strain fitness (log2 ratio) -2
-1
0
1 at 12.638 kb on + strand, within NOLOHH_00325 at 12.654 kb on - strand, within NOLOHH_00325 at 12.655 kb on + strand, within NOLOHH_00325 at 12.656 kb on - strand, within NOLOHH_00325 at 12.656 kb on - strand, within NOLOHH_00325 at 12.658 kb on - strand, within NOLOHH_00325 at 12.660 kb on - strand, within NOLOHH_00325 at 12.986 kb on - strand, within NOLOHH_00325 at 13.152 kb on - strand, within NOLOHH_00325 at 13.164 kb on - strand, within NOLOHH_00325 at 13.231 kb on - strand, within NOLOHH_00325 at 13.319 kb on - strand at 13.322 kb on - strand at 13.388 kb on + strand at 13.423 kb on - strand, within NOLOHH_00330 at 13.459 kb on - strand, within NOLOHH_00330 at 13.525 kb on - strand, within NOLOHH_00330 at 13.526 kb on + strand, within NOLOHH_00330 at 13.526 kb on + strand, within NOLOHH_00330 at 13.581 kb on + strand, within NOLOHH_00330 at 13.582 kb on - strand, within NOLOHH_00330 at 13.603 kb on + strand at 13.611 kb on + strand at 13.611 kb on + strand at 13.612 kb on - strand at 13.628 kb on + strand at 13.751 kb on + strand, within NOLOHH_00335 at 13.810 kb on + strand, within NOLOHH_00335 at 13.844 kb on - strand, within NOLOHH_00335 at 13.874 kb on + strand, within NOLOHH_00335 at 13.875 kb on - strand, within NOLOHH_00335 at 13.924 kb on + strand, within NOLOHH_00335 at 13.938 kb on + strand, within NOLOHH_00335 at 13.938 kb on + strand, within NOLOHH_00335 at 13.939 kb on - strand, within NOLOHH_00335 at 13.939 kb on - strand, within NOLOHH_00335 at 13.939 kb on - strand, within NOLOHH_00335 at 14.029 kb on + strand, within NOLOHH_00335 at 14.029 kb on + strand, within NOLOHH_00335 at 14.029 kb on + strand, within NOLOHH_00335 at 14.092 kb on + strand, within NOLOHH_00335 at 14.092 kb on + strand, within NOLOHH_00335 at 14.092 kb on + strand, within NOLOHH_00335 at 14.093 kb on - strand, within NOLOHH_00335 at 14.093 kb on - strand, within NOLOHH_00335 at 14.116 kb on + strand, within NOLOHH_00335 at 14.117 kb on - strand, within NOLOHH_00335 at 14.155 kb on - strand, within NOLOHH_00335 at 14.155 kb on - strand, within NOLOHH_00335 at 14.155 kb on - strand, within NOLOHH_00335 at 14.176 kb on - strand, within NOLOHH_00335 at 14.240 kb on - strand, within NOLOHH_00335 at 14.359 kb on - strand at 14.359 kb on - strand at 14.395 kb on + strand at 14.397 kb on + strand at 14.484 kb on - strand at 14.537 kb on + strand at 14.610 kb on + strand at 14.660 kb on - strand, within NOLOHH_00340 at 14.682 kb on - strand, within NOLOHH_00340 at 14.739 kb on - strand, within NOLOHH_00340 at 14.767 kb on - strand, within NOLOHH_00340 at 14.825 kb on - strand, within NOLOHH_00340 at 14.882 kb on - strand, within NOLOHH_00340 at 14.960 kb on - strand, within NOLOHH_00340 at 15.055 kb on + strand, within NOLOHH_00340 at 15.168 kb on - strand, within NOLOHH_00340 at 15.292 kb on - strand, within NOLOHH_00340
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 12,638 + NOLOHH_00325 0.30 +0.5 12,654 - NOLOHH_00325 0.32 +1.1 12,655 + NOLOHH_00325 0.32 -0.9 12,656 - NOLOHH_00325 0.32 +0.4 12,656 - NOLOHH_00325 0.32 +0.0 12,658 - NOLOHH_00325 0.32 +0.4 12,660 - NOLOHH_00325 0.32 +0.2 12,986 - NOLOHH_00325 0.63 +0.9 13,152 - NOLOHH_00325 0.79 +0.7 13,164 - NOLOHH_00325 0.80 -0.3 13,231 - NOLOHH_00325 0.86 -0.1 13,319 - +0.5 13,322 - -0.8 13,388 + +0.5 13,423 - NOLOHH_00330 0.16 +0.1 13,459 - NOLOHH_00330 0.32 +0.0 13,525 - NOLOHH_00330 0.61 -1.2 13,526 + NOLOHH_00330 0.62 +1.0 13,526 + NOLOHH_00330 0.62 +0.8 13,581 + NOLOHH_00330 0.86 -0.2 13,582 - NOLOHH_00330 0.87 -0.3 13,603 + -0.0 13,611 + +0.2 13,611 + +0.6 13,612 - -0.1 13,628 + -0.1 13,751 + NOLOHH_00335 0.18 +0.3 13,810 + NOLOHH_00335 0.27 +0.8 13,844 - NOLOHH_00335 0.31 -0.1 13,874 + NOLOHH_00335 0.36 -0.3 13,875 - NOLOHH_00335 0.36 +0.1 13,924 + NOLOHH_00335 0.43 +0.7 13,938 + NOLOHH_00335 0.45 +0.3 13,938 + NOLOHH_00335 0.45 +0.0 13,939 - NOLOHH_00335 0.45 +0.6 13,939 - NOLOHH_00335 0.45 -0.1 13,939 - NOLOHH_00335 0.45 -0.0 14,029 + NOLOHH_00335 0.57 -0.5 14,029 + NOLOHH_00335 0.57 -0.3 14,029 + NOLOHH_00335 0.57 +0.7 14,092 + NOLOHH_00335 0.66 +0.6 14,092 + NOLOHH_00335 0.66 -0.0 14,092 + NOLOHH_00335 0.66 -0.4 14,093 - NOLOHH_00335 0.67 +0.3 14,093 - NOLOHH_00335 0.67 +0.0 14,116 + NOLOHH_00335 0.70 +0.5 14,117 - NOLOHH_00335 0.70 +0.5 14,155 - NOLOHH_00335 0.75 +0.7 14,155 - NOLOHH_00335 0.75 +0.2 14,155 - NOLOHH_00335 0.75 +0.3 14,176 - NOLOHH_00335 0.78 -1.8 14,240 - NOLOHH_00335 0.87 +0.5 14,359 - -0.1 14,359 - +0.1 14,395 + +0.1 14,397 + -0.3 14,484 - -1.0 14,537 + -0.4 14,610 + +0.0 14,660 - NOLOHH_00340 0.12 -0.2 14,682 - NOLOHH_00340 0.13 +0.3 14,739 - NOLOHH_00340 0.15 +0.7 14,767 - NOLOHH_00340 0.16 +0.8 14,825 - NOLOHH_00340 0.18 +0.6 14,882 - NOLOHH_00340 0.20 +0.4 14,960 - NOLOHH_00340 0.23 +1.0 15,055 + NOLOHH_00340 0.26 -0.1 15,168 - NOLOHH_00340 0.30 -0.6 15,292 - NOLOHH_00340 0.35 +0.1
Or see this region's nucleotide sequence