Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_00095 and NOLOHH_00100 are separated by 623 nucleotides NOLOHH_00100 and NOLOHH_00105 are separated by 88 nucleotides NOLOHH_00105 and NOLOHH_00110 are separated by 190 nucleotides
NOLOHH_00095: NOLOHH_00095 - DUF192 domain-containing protein, at 8,356 to 8,775
_00095
NOLOHH_00100: NOLOHH_00100 - CcgD protein (CUP-controlled regulon), at 9,399 to 9,668
_00100
NOLOHH_00105: NOLOHH_00105 - hypothetical protein, at 9,757 to 9,972
_00105
NOLOHH_00110: NOLOHH_00110 - DUF945 domain-containing protein, at 10,163 to 10,987
_00110
Position (kb)
9
10 Strain fitness (log2 ratio)
-1
0
1
2 at 8.447 kb on + strand, within NOLOHH_00095 at 8.447 kb on + strand, within NOLOHH_00095 at 8.447 kb on + strand, within NOLOHH_00095 at 8.447 kb on + strand, within NOLOHH_00095 at 8.447 kb on + strand, within NOLOHH_00095 at 8.451 kb on + strand, within NOLOHH_00095 at 8.451 kb on + strand, within NOLOHH_00095 at 8.451 kb on + strand, within NOLOHH_00095 at 8.451 kb on + strand, within NOLOHH_00095 at 8.456 kb on + strand, within NOLOHH_00095 at 8.493 kb on + strand, within NOLOHH_00095 at 8.493 kb on + strand, within NOLOHH_00095 at 8.493 kb on + strand, within NOLOHH_00095 at 8.493 kb on + strand, within NOLOHH_00095 at 8.586 kb on + strand, within NOLOHH_00095 at 8.625 kb on + strand, within NOLOHH_00095 at 8.669 kb on + strand, within NOLOHH_00095 at 8.669 kb on + strand, within NOLOHH_00095 at 8.669 kb on + strand, within NOLOHH_00095 at 8.669 kb on + strand, within NOLOHH_00095 at 8.773 kb on + strand at 8.849 kb on + strand at 8.889 kb on + strand at 8.889 kb on + strand at 9.255 kb on + strand at 9.314 kb on - strand at 9.480 kb on + strand, within NOLOHH_00100 at 9.480 kb on + strand, within NOLOHH_00100 at 9.480 kb on + strand, within NOLOHH_00100 at 9.480 kb on + strand, within NOLOHH_00100 at 9.481 kb on - strand, within NOLOHH_00100 at 9.481 kb on - strand, within NOLOHH_00100 at 9.481 kb on - strand, within NOLOHH_00100 at 9.481 kb on - strand, within NOLOHH_00100 at 9.481 kb on - strand, within NOLOHH_00100 at 9.481 kb on - strand, within NOLOHH_00100 at 9.481 kb on - strand, within NOLOHH_00100 at 9.481 kb on - strand, within NOLOHH_00100 at 9.481 kb on - strand, within NOLOHH_00100 at 9.523 kb on + strand, within NOLOHH_00100 at 9.526 kb on + strand, within NOLOHH_00100 at 9.526 kb on + strand, within NOLOHH_00100 at 9.527 kb on - strand, within NOLOHH_00100 at 9.527 kb on - strand, within NOLOHH_00100 at 9.551 kb on + strand, within NOLOHH_00100 at 9.552 kb on - strand, within NOLOHH_00100 at 9.581 kb on + strand, within NOLOHH_00100 at 9.581 kb on + strand, within NOLOHH_00100 at 9.581 kb on + strand, within NOLOHH_00100 at 9.581 kb on + strand, within NOLOHH_00100 at 9.582 kb on - strand, within NOLOHH_00100 at 9.585 kb on + strand, within NOLOHH_00100 at 9.585 kb on + strand, within NOLOHH_00100 at 9.585 kb on + strand, within NOLOHH_00100 at 9.585 kb on + strand, within NOLOHH_00100 at 9.586 kb on - strand, within NOLOHH_00100 at 9.586 kb on - strand, within NOLOHH_00100 at 9.586 kb on - strand, within NOLOHH_00100 at 9.586 kb on - strand, within NOLOHH_00100 at 9.607 kb on + strand, within NOLOHH_00100 at 9.607 kb on + strand, within NOLOHH_00100 at 9.608 kb on - strand, within NOLOHH_00100 at 9.608 kb on - strand, within NOLOHH_00100 at 9.613 kb on + strand, within NOLOHH_00100 at 9.613 kb on + strand, within NOLOHH_00100 at 9.672 kb on + strand at 9.673 kb on - strand at 9.673 kb on - strand at 9.674 kb on + strand at 9.675 kb on - strand at 9.688 kb on + strand at 9.688 kb on + strand at 9.744 kb on + strand at 9.744 kb on + strand at 9.744 kb on + strand at 9.754 kb on - strand at 9.756 kb on + strand at 9.756 kb on + strand at 9.756 kb on + strand at 9.756 kb on + strand at 9.756 kb on + strand at 9.756 kb on + strand at 9.756 kb on + strand at 9.756 kb on + strand at 9.756 kb on + strand at 9.757 kb on - strand at 9.757 kb on - strand at 9.757 kb on - strand at 9.757 kb on - strand at 9.757 kb on - strand at 9.757 kb on - strand at 9.757 kb on - strand at 9.764 kb on + strand at 9.765 kb on - strand at 9.781 kb on - strand, within NOLOHH_00105 at 9.792 kb on + strand, within NOLOHH_00105 at 9.816 kb on + strand, within NOLOHH_00105 at 9.816 kb on + strand, within NOLOHH_00105 at 9.816 kb on + strand, within NOLOHH_00105 at 9.817 kb on - strand, within NOLOHH_00105 at 9.817 kb on - strand, within NOLOHH_00105 at 9.898 kb on + strand, within NOLOHH_00105 at 9.898 kb on + strand, within NOLOHH_00105 at 9.898 kb on + strand, within NOLOHH_00105 at 9.898 kb on + strand, within NOLOHH_00105 at 9.899 kb on - strand, within NOLOHH_00105 at 9.905 kb on - strand, within NOLOHH_00105 at 9.905 kb on - strand, within NOLOHH_00105 at 9.926 kb on + strand, within NOLOHH_00105 at 9.963 kb on - strand at 9.967 kb on + strand at 9.967 kb on + strand at 9.967 kb on + strand at 9.967 kb on + strand at 9.967 kb on + strand at 9.967 kb on + strand at 9.967 kb on + strand at 9.967 kb on + strand at 9.967 kb on + strand at 9.967 kb on + strand at 9.967 kb on + strand at 9.967 kb on + strand at 9.967 kb on + strand at 9.968 kb on - strand at 9.968 kb on - strand at 9.968 kb on - strand at 9.968 kb on - strand at 10.005 kb on + strand at 10.005 kb on + strand at 10.005 kb on + strand at 10.013 kb on - strand at 10.082 kb on - strand at 10.082 kb on - strand at 10.082 kb on - strand at 10.145 kb on + strand at 10.156 kb on + strand at 10.156 kb on + strand at 10.157 kb on - strand at 10.157 kb on - strand at 10.157 kb on - strand at 10.157 kb on - strand at 10.162 kb on + strand at 10.162 kb on + strand at 10.162 kb on + strand at 10.162 kb on + strand at 10.162 kb on + strand at 10.162 kb on + strand at 10.162 kb on + strand at 10.162 kb on + strand at 10.162 kb on + strand at 10.163 kb on - strand at 10.163 kb on - strand at 10.163 kb on - strand at 10.167 kb on + strand at 10.171 kb on + strand at 10.172 kb on - strand at 10.192 kb on + strand at 10.238 kb on + strand at 10.249 kb on + strand, within NOLOHH_00110 at 10.249 kb on + strand, within NOLOHH_00110 at 10.296 kb on - strand, within NOLOHH_00110 at 10.296 kb on - strand, within NOLOHH_00110 at 10.296 kb on - strand, within NOLOHH_00110 at 10.296 kb on - strand, within NOLOHH_00110 at 10.314 kb on + strand, within NOLOHH_00110 at 10.314 kb on + strand, within NOLOHH_00110 at 10.314 kb on + strand, within NOLOHH_00110 at 10.317 kb on + strand, within NOLOHH_00110 at 10.317 kb on + strand, within NOLOHH_00110 at 10.317 kb on + strand, within NOLOHH_00110 at 10.317 kb on + strand, within NOLOHH_00110 at 10.317 kb on + strand, within NOLOHH_00110 at 10.317 kb on + strand, within NOLOHH_00110 at 10.317 kb on + strand, within NOLOHH_00110 at 10.317 kb on + strand, within NOLOHH_00110 at 10.317 kb on + strand, within NOLOHH_00110 at 10.317 kb on + strand, within NOLOHH_00110 at 10.317 kb on + strand, within NOLOHH_00110 at 10.317 kb on + strand, within NOLOHH_00110 at 10.318 kb on - strand, within NOLOHH_00110 at 10.318 kb on - strand, within NOLOHH_00110 at 10.318 kb on - strand, within NOLOHH_00110 at 10.376 kb on - strand, within NOLOHH_00110 at 10.385 kb on - strand, within NOLOHH_00110 at 10.468 kb on + strand, within NOLOHH_00110 at 10.468 kb on + strand, within NOLOHH_00110 at 10.468 kb on + strand, within NOLOHH_00110 at 10.468 kb on + strand, within NOLOHH_00110 at 10.468 kb on + strand, within NOLOHH_00110 at 10.468 kb on + strand, within NOLOHH_00110 at 10.469 kb on - strand, within NOLOHH_00110 at 10.469 kb on - strand, within NOLOHH_00110 at 10.512 kb on + strand, within NOLOHH_00110 at 10.512 kb on + strand, within NOLOHH_00110 at 10.513 kb on - strand, within NOLOHH_00110 at 10.513 kb on - strand, within NOLOHH_00110 at 10.539 kb on + strand, within NOLOHH_00110 at 10.570 kb on + strand, within NOLOHH_00110 at 10.603 kb on + strand, within NOLOHH_00110 at 10.603 kb on + strand, within NOLOHH_00110 at 10.664 kb on - strand, within NOLOHH_00110
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 8,447 + NOLOHH_00095 0.22 -0.8 8,447 + NOLOHH_00095 0.22 -0.1 8,447 + NOLOHH_00095 0.22 -0.4 8,447 + NOLOHH_00095 0.22 -1.1 8,447 + NOLOHH_00095 0.22 -0.3 8,451 + NOLOHH_00095 0.23 +0.3 8,451 + NOLOHH_00095 0.23 +0.1 8,451 + NOLOHH_00095 0.23 -1.5 8,451 + NOLOHH_00095 0.23 +0.7 8,456 + NOLOHH_00095 0.24 -0.4 8,493 + NOLOHH_00095 0.33 +0.4 8,493 + NOLOHH_00095 0.33 +0.2 8,493 + NOLOHH_00095 0.33 +0.4 8,493 + NOLOHH_00095 0.33 +0.7 8,586 + NOLOHH_00095 0.55 -1.0 8,625 + NOLOHH_00095 0.64 +0.8 8,669 + NOLOHH_00095 0.75 +1.0 8,669 + NOLOHH_00095 0.75 -1.1 8,669 + NOLOHH_00095 0.75 +0.2 8,669 + NOLOHH_00095 0.75 +0.0 8,773 + -0.3 8,849 + -0.0 8,889 + +0.4 8,889 + -0.7 9,255 + -0.2 9,314 - -0.8 9,480 + NOLOHH_00100 0.30 +1.1 9,480 + NOLOHH_00100 0.30 +0.4 9,480 + NOLOHH_00100 0.30 -0.1 9,480 + NOLOHH_00100 0.30 -0.3 9,481 - NOLOHH_00100 0.30 -0.2 9,481 - NOLOHH_00100 0.30 -0.2 9,481 - NOLOHH_00100 0.30 +0.2 9,481 - NOLOHH_00100 0.30 -0.0 9,481 - NOLOHH_00100 0.30 -0.3 9,481 - NOLOHH_00100 0.30 +0.4 9,481 - NOLOHH_00100 0.30 -0.0 9,481 - NOLOHH_00100 0.30 -0.6 9,481 - NOLOHH_00100 0.30 +0.6 9,523 + NOLOHH_00100 0.46 +0.9 9,526 + NOLOHH_00100 0.47 +0.7 9,526 + NOLOHH_00100 0.47 +0.1 9,527 - NOLOHH_00100 0.47 -0.3 9,527 - NOLOHH_00100 0.47 +0.3 9,551 + NOLOHH_00100 0.56 +0.1 9,552 - NOLOHH_00100 0.57 +0.3 9,581 + NOLOHH_00100 0.67 +0.6 9,581 + NOLOHH_00100 0.67 +0.9 9,581 + NOLOHH_00100 0.67 -0.5 9,581 + NOLOHH_00100 0.67 -0.4 9,582 - NOLOHH_00100 0.68 -0.4 9,585 + NOLOHH_00100 0.69 -0.6 9,585 + NOLOHH_00100 0.69 +0.1 9,585 + NOLOHH_00100 0.69 +0.8 9,585 + NOLOHH_00100 0.69 -0.1 9,586 - NOLOHH_00100 0.69 +0.3 9,586 - NOLOHH_00100 0.69 +0.8 9,586 - NOLOHH_00100 0.69 +0.8 9,586 - NOLOHH_00100 0.69 -0.0 9,607 + NOLOHH_00100 0.77 -0.3 9,607 + NOLOHH_00100 0.77 +0.2 9,608 - NOLOHH_00100 0.77 +0.9 9,608 - NOLOHH_00100 0.77 -0.1 9,613 + NOLOHH_00100 0.79 -0.1 9,613 + NOLOHH_00100 0.79 +0.3 9,672 + +0.1 9,673 - -0.5 9,673 - +0.3 9,674 + +0.5 9,675 - +0.9 9,688 + +1.0 9,688 + +0.1 9,744 + +0.6 9,744 + -0.0 9,744 + -0.1 9,754 - +0.6 9,756 + +0.5 9,756 + +0.5 9,756 + -0.7 9,756 + +0.6 9,756 + +0.5 9,756 + +0.4 9,756 + +2.0 9,756 + +0.2 9,756 + +1.3 9,757 - +0.1 9,757 - +1.0 9,757 - -1.5 9,757 - +0.5 9,757 - +1.0 9,757 - +0.1 9,757 - +0.7 9,764 + +0.3 9,765 - -0.8 9,781 - NOLOHH_00105 0.11 -0.0 9,792 + NOLOHH_00105 0.16 +0.2 9,816 + NOLOHH_00105 0.27 -1.7 9,816 + NOLOHH_00105 0.27 -1.4 9,816 + NOLOHH_00105 0.27 +0.1 9,817 - NOLOHH_00105 0.28 -1.1 9,817 - NOLOHH_00105 0.28 +0.3 9,898 + NOLOHH_00105 0.65 +0.6 9,898 + NOLOHH_00105 0.65 -0.5 9,898 + NOLOHH_00105 0.65 +0.5 9,898 + NOLOHH_00105 0.65 -0.6 9,899 - NOLOHH_00105 0.66 +0.4 9,905 - NOLOHH_00105 0.69 +0.8 9,905 - NOLOHH_00105 0.69 +0.8 9,926 + NOLOHH_00105 0.78 -0.7 9,963 - +1.6 9,967 + +0.2 9,967 + -0.4 9,967 + +0.0 9,967 + -0.1 9,967 + +0.1 9,967 + +0.4 9,967 + +0.7 9,967 + +0.1 9,967 + -0.2 9,967 + -0.7 9,967 + -0.3 9,967 + +0.0 9,967 + +0.9 9,968 - +0.3 9,968 - -0.1 9,968 - +0.4 9,968 - -0.0 10,005 + -0.8 10,005 + -0.9 10,005 + +1.2 10,013 - -1.3 10,082 - -0.5 10,082 - +0.8 10,082 - +0.2 10,145 + +0.1 10,156 + -0.8 10,156 + -0.0 10,157 - +0.2 10,157 - +0.2 10,157 - -0.0 10,157 - +0.3 10,162 + +1.1 10,162 + -0.3 10,162 + +0.3 10,162 + +0.6 10,162 + -0.4 10,162 + +0.3 10,162 + +0.6 10,162 + +0.6 10,162 + -0.2 10,163 - +0.0 10,163 - +0.0 10,163 - +0.7 10,167 + +0.7 10,171 + -0.2 10,172 - +1.3 10,192 + -0.8 10,238 + -0.1 10,249 + NOLOHH_00110 0.10 +0.1 10,249 + NOLOHH_00110 0.10 +0.1 10,296 - NOLOHH_00110 0.16 -0.3 10,296 - NOLOHH_00110 0.16 +1.0 10,296 - NOLOHH_00110 0.16 +0.7 10,296 - NOLOHH_00110 0.16 -0.3 10,314 + NOLOHH_00110 0.18 +0.0 10,314 + NOLOHH_00110 0.18 +0.6 10,314 + NOLOHH_00110 0.18 +0.0 10,317 + NOLOHH_00110 0.19 -0.4 10,317 + NOLOHH_00110 0.19 -0.2 10,317 + NOLOHH_00110 0.19 -0.2 10,317 + NOLOHH_00110 0.19 +0.8 10,317 + NOLOHH_00110 0.19 +0.1 10,317 + NOLOHH_00110 0.19 -0.1 10,317 + NOLOHH_00110 0.19 +0.2 10,317 + NOLOHH_00110 0.19 -1.3 10,317 + NOLOHH_00110 0.19 -0.3 10,317 + NOLOHH_00110 0.19 +0.5 10,317 + NOLOHH_00110 0.19 +0.6 10,317 + NOLOHH_00110 0.19 +0.2 10,318 - NOLOHH_00110 0.19 -0.3 10,318 - NOLOHH_00110 0.19 +1.0 10,318 - NOLOHH_00110 0.19 -0.3 10,376 - NOLOHH_00110 0.26 +1.5 10,385 - NOLOHH_00110 0.27 -0.1 10,468 + NOLOHH_00110 0.37 -0.3 10,468 + NOLOHH_00110 0.37 +0.2 10,468 + NOLOHH_00110 0.37 -0.1 10,468 + NOLOHH_00110 0.37 -0.7 10,468 + NOLOHH_00110 0.37 +0.2 10,468 + NOLOHH_00110 0.37 -0.0 10,469 - NOLOHH_00110 0.37 +1.1 10,469 - NOLOHH_00110 0.37 -0.3 10,512 + NOLOHH_00110 0.42 -0.6 10,512 + NOLOHH_00110 0.42 +0.6 10,513 - NOLOHH_00110 0.42 +0.4 10,513 - NOLOHH_00110 0.42 +0.3 10,539 + NOLOHH_00110 0.46 -0.5 10,570 + NOLOHH_00110 0.49 +0.4 10,603 + NOLOHH_00110 0.53 -0.4 10,603 + NOLOHH_00110 0.53 -0.8 10,664 - NOLOHH_00110 0.61 +1.3
Or see this region's nucleotide sequence