Strain Fitness in Escherichia coli ECOR27 around NOLOHH_00100

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_00095 and NOLOHH_00100 are separated by 623 nucleotidesNOLOHH_00100 and NOLOHH_00105 are separated by 88 nucleotidesNOLOHH_00105 and NOLOHH_00110 are separated by 190 nucleotides NOLOHH_00095: NOLOHH_00095 - DUF192 domain-containing protein, at 8,356 to 8,775 _00095 NOLOHH_00100: NOLOHH_00100 - CcgD protein (CUP-controlled regulon), at 9,399 to 9,668 _00100 NOLOHH_00105: NOLOHH_00105 - hypothetical protein, at 9,757 to 9,972 _00105 NOLOHH_00110: NOLOHH_00110 - DUF945 domain-containing protein, at 10,163 to 10,987 _00110 Position (kb) 9 10Strain fitness (log2 ratio) -1 0 1 2at 8.447 kb on + strand, within NOLOHH_00095at 8.447 kb on + strand, within NOLOHH_00095at 8.447 kb on + strand, within NOLOHH_00095at 8.447 kb on + strand, within NOLOHH_00095at 8.447 kb on + strand, within NOLOHH_00095at 8.451 kb on + strand, within NOLOHH_00095at 8.451 kb on + strand, within NOLOHH_00095at 8.451 kb on + strand, within NOLOHH_00095at 8.451 kb on + strand, within NOLOHH_00095at 8.456 kb on + strand, within NOLOHH_00095at 8.493 kb on + strand, within NOLOHH_00095at 8.493 kb on + strand, within NOLOHH_00095at 8.493 kb on + strand, within NOLOHH_00095at 8.493 kb on + strand, within NOLOHH_00095at 8.586 kb on + strand, within NOLOHH_00095at 8.625 kb on + strand, within NOLOHH_00095at 8.669 kb on + strand, within NOLOHH_00095at 8.669 kb on + strand, within NOLOHH_00095at 8.669 kb on + strand, within NOLOHH_00095at 8.669 kb on + strand, within NOLOHH_00095at 8.773 kb on + strandat 8.849 kb on + strandat 8.889 kb on + strandat 8.889 kb on + strandat 9.255 kb on + strandat 9.314 kb on - strandat 9.480 kb on + strand, within NOLOHH_00100at 9.480 kb on + strand, within NOLOHH_00100at 9.480 kb on + strand, within NOLOHH_00100at 9.480 kb on + strand, within NOLOHH_00100at 9.481 kb on - strand, within NOLOHH_00100at 9.481 kb on - strand, within NOLOHH_00100at 9.481 kb on - strand, within NOLOHH_00100at 9.481 kb on - strand, within NOLOHH_00100at 9.481 kb on - strand, within NOLOHH_00100at 9.481 kb on - strand, within NOLOHH_00100at 9.481 kb on - strand, within NOLOHH_00100at 9.481 kb on - strand, within NOLOHH_00100at 9.481 kb on - strand, within NOLOHH_00100at 9.523 kb on + strand, within NOLOHH_00100at 9.526 kb on + strand, within NOLOHH_00100at 9.526 kb on + strand, within NOLOHH_00100at 9.527 kb on - strand, within NOLOHH_00100at 9.527 kb on - strand, within NOLOHH_00100at 9.551 kb on + strand, within NOLOHH_00100at 9.552 kb on - strand, within NOLOHH_00100at 9.581 kb on + strand, within NOLOHH_00100at 9.581 kb on + strand, within NOLOHH_00100at 9.581 kb on + strand, within NOLOHH_00100at 9.581 kb on + strand, within NOLOHH_00100at 9.582 kb on - strand, within NOLOHH_00100at 9.585 kb on + strand, within NOLOHH_00100at 9.585 kb on + strand, within NOLOHH_00100at 9.585 kb on + strand, within NOLOHH_00100at 9.585 kb on + strand, within NOLOHH_00100at 9.586 kb on - strand, within NOLOHH_00100at 9.586 kb on - strand, within NOLOHH_00100at 9.586 kb on - strand, within NOLOHH_00100at 9.586 kb on - strand, within NOLOHH_00100at 9.607 kb on + strand, within NOLOHH_00100at 9.607 kb on + strand, within NOLOHH_00100at 9.608 kb on - strand, within NOLOHH_00100at 9.608 kb on - strand, within NOLOHH_00100at 9.613 kb on + strand, within NOLOHH_00100at 9.613 kb on + strand, within NOLOHH_00100at 9.672 kb on + strandat 9.673 kb on - strandat 9.673 kb on - strandat 9.674 kb on + strandat 9.675 kb on - strandat 9.688 kb on + strandat 9.688 kb on + strandat 9.744 kb on + strandat 9.744 kb on + strandat 9.744 kb on + strandat 9.754 kb on - strandat 9.756 kb on + strandat 9.756 kb on + strandat 9.756 kb on + strandat 9.756 kb on + strandat 9.756 kb on + strandat 9.756 kb on + strandat 9.756 kb on + strandat 9.756 kb on + strandat 9.756 kb on + strandat 9.757 kb on - strandat 9.757 kb on - strandat 9.757 kb on - strandat 9.757 kb on - strandat 9.757 kb on - strandat 9.757 kb on - strandat 9.757 kb on - strandat 9.764 kb on + strandat 9.765 kb on - strandat 9.781 kb on - strand, within NOLOHH_00105at 9.792 kb on + strand, within NOLOHH_00105at 9.816 kb on + strand, within NOLOHH_00105at 9.816 kb on + strand, within NOLOHH_00105at 9.816 kb on + strand, within NOLOHH_00105at 9.817 kb on - strand, within NOLOHH_00105at 9.817 kb on - strand, within NOLOHH_00105at 9.898 kb on + strand, within NOLOHH_00105at 9.898 kb on + strand, within NOLOHH_00105at 9.898 kb on + strand, within NOLOHH_00105at 9.898 kb on + strand, within NOLOHH_00105at 9.899 kb on - strand, within NOLOHH_00105at 9.905 kb on - strand, within NOLOHH_00105at 9.905 kb on - strand, within NOLOHH_00105at 9.926 kb on + strand, within NOLOHH_00105at 9.963 kb on - strandat 9.967 kb on + strandat 9.967 kb on + strandat 9.967 kb on + strandat 9.967 kb on + strandat 9.967 kb on + strandat 9.967 kb on + strandat 9.967 kb on + strandat 9.967 kb on + strandat 9.967 kb on + strandat 9.967 kb on + strandat 9.967 kb on + strandat 9.967 kb on + strandat 9.967 kb on + strandat 9.968 kb on - strandat 9.968 kb on - strandat 9.968 kb on - strandat 9.968 kb on - strandat 10.005 kb on + strandat 10.005 kb on + strandat 10.005 kb on + strandat 10.013 kb on - strandat 10.082 kb on - strandat 10.082 kb on - strandat 10.082 kb on - strandat 10.145 kb on + strandat 10.156 kb on + strandat 10.156 kb on + strandat 10.157 kb on - strandat 10.157 kb on - strandat 10.157 kb on - strandat 10.157 kb on - strandat 10.162 kb on + strandat 10.162 kb on + strandat 10.162 kb on + strandat 10.162 kb on + strandat 10.162 kb on + strandat 10.162 kb on + strandat 10.162 kb on + strandat 10.162 kb on + strandat 10.162 kb on + strandat 10.163 kb on - strandat 10.163 kb on - strandat 10.163 kb on - strandat 10.167 kb on + strandat 10.171 kb on + strandat 10.172 kb on - strandat 10.192 kb on + strandat 10.238 kb on + strandat 10.249 kb on + strand, within NOLOHH_00110at 10.249 kb on + strand, within NOLOHH_00110at 10.296 kb on - strand, within NOLOHH_00110at 10.296 kb on - strand, within NOLOHH_00110at 10.296 kb on - strand, within NOLOHH_00110at 10.296 kb on - strand, within NOLOHH_00110at 10.314 kb on + strand, within NOLOHH_00110at 10.314 kb on + strand, within NOLOHH_00110at 10.314 kb on + strand, within NOLOHH_00110at 10.317 kb on + strand, within NOLOHH_00110at 10.317 kb on + strand, within NOLOHH_00110at 10.317 kb on + strand, within NOLOHH_00110at 10.317 kb on + strand, within NOLOHH_00110at 10.317 kb on + strand, within NOLOHH_00110at 10.317 kb on + strand, within NOLOHH_00110at 10.317 kb on + strand, within NOLOHH_00110at 10.317 kb on + strand, within NOLOHH_00110at 10.317 kb on + strand, within NOLOHH_00110at 10.317 kb on + strand, within NOLOHH_00110at 10.317 kb on + strand, within NOLOHH_00110at 10.317 kb on + strand, within NOLOHH_00110at 10.318 kb on - strand, within NOLOHH_00110at 10.318 kb on - strand, within NOLOHH_00110at 10.318 kb on - strand, within NOLOHH_00110at 10.376 kb on - strand, within NOLOHH_00110at 10.385 kb on - strand, within NOLOHH_00110at 10.468 kb on + strand, within NOLOHH_00110at 10.468 kb on + strand, within NOLOHH_00110at 10.468 kb on + strand, within NOLOHH_00110at 10.468 kb on + strand, within NOLOHH_00110at 10.468 kb on + strand, within NOLOHH_00110at 10.468 kb on + strand, within NOLOHH_00110at 10.469 kb on - strand, within NOLOHH_00110at 10.469 kb on - strand, within NOLOHH_00110at 10.512 kb on + strand, within NOLOHH_00110at 10.512 kb on + strand, within NOLOHH_00110at 10.513 kb on - strand, within NOLOHH_00110at 10.513 kb on - strand, within NOLOHH_00110at 10.539 kb on + strand, within NOLOHH_00110at 10.570 kb on + strand, within NOLOHH_00110at 10.603 kb on + strand, within NOLOHH_00110at 10.603 kb on + strand, within NOLOHH_00110at 10.664 kb on - strand, within NOLOHH_00110

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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8,447 + NOLOHH_00095 0.22 -0.8
8,447 + NOLOHH_00095 0.22 -0.1
8,447 + NOLOHH_00095 0.22 -0.4
8,447 + NOLOHH_00095 0.22 -1.1
8,447 + NOLOHH_00095 0.22 -0.3
8,451 + NOLOHH_00095 0.23 +0.3
8,451 + NOLOHH_00095 0.23 +0.1
8,451 + NOLOHH_00095 0.23 -1.5
8,451 + NOLOHH_00095 0.23 +0.7
8,456 + NOLOHH_00095 0.24 -0.4
8,493 + NOLOHH_00095 0.33 +0.4
8,493 + NOLOHH_00095 0.33 +0.2
8,493 + NOLOHH_00095 0.33 +0.4
8,493 + NOLOHH_00095 0.33 +0.7
8,586 + NOLOHH_00095 0.55 -1.0
8,625 + NOLOHH_00095 0.64 +0.8
8,669 + NOLOHH_00095 0.75 +1.0
8,669 + NOLOHH_00095 0.75 -1.1
8,669 + NOLOHH_00095 0.75 +0.2
8,669 + NOLOHH_00095 0.75 +0.0
8,773 + -0.3
8,849 + -0.0
8,889 + +0.4
8,889 + -0.7
9,255 + -0.2
9,314 - -0.8
9,480 + NOLOHH_00100 0.30 +1.1
9,480 + NOLOHH_00100 0.30 +0.4
9,480 + NOLOHH_00100 0.30 -0.1
9,480 + NOLOHH_00100 0.30 -0.3
9,481 - NOLOHH_00100 0.30 -0.2
9,481 - NOLOHH_00100 0.30 -0.2
9,481 - NOLOHH_00100 0.30 +0.2
9,481 - NOLOHH_00100 0.30 -0.0
9,481 - NOLOHH_00100 0.30 -0.3
9,481 - NOLOHH_00100 0.30 +0.4
9,481 - NOLOHH_00100 0.30 -0.0
9,481 - NOLOHH_00100 0.30 -0.6
9,481 - NOLOHH_00100 0.30 +0.6
9,523 + NOLOHH_00100 0.46 +0.9
9,526 + NOLOHH_00100 0.47 +0.7
9,526 + NOLOHH_00100 0.47 +0.1
9,527 - NOLOHH_00100 0.47 -0.3
9,527 - NOLOHH_00100 0.47 +0.3
9,551 + NOLOHH_00100 0.56 +0.1
9,552 - NOLOHH_00100 0.57 +0.3
9,581 + NOLOHH_00100 0.67 +0.6
9,581 + NOLOHH_00100 0.67 +0.9
9,581 + NOLOHH_00100 0.67 -0.5
9,581 + NOLOHH_00100 0.67 -0.4
9,582 - NOLOHH_00100 0.68 -0.4
9,585 + NOLOHH_00100 0.69 -0.6
9,585 + NOLOHH_00100 0.69 +0.1
9,585 + NOLOHH_00100 0.69 +0.8
9,585 + NOLOHH_00100 0.69 -0.1
9,586 - NOLOHH_00100 0.69 +0.3
9,586 - NOLOHH_00100 0.69 +0.8
9,586 - NOLOHH_00100 0.69 +0.8
9,586 - NOLOHH_00100 0.69 -0.0
9,607 + NOLOHH_00100 0.77 -0.3
9,607 + NOLOHH_00100 0.77 +0.2
9,608 - NOLOHH_00100 0.77 +0.9
9,608 - NOLOHH_00100 0.77 -0.1
9,613 + NOLOHH_00100 0.79 -0.1
9,613 + NOLOHH_00100 0.79 +0.3
9,672 + +0.1
9,673 - -0.5
9,673 - +0.3
9,674 + +0.5
9,675 - +0.9
9,688 + +1.0
9,688 + +0.1
9,744 + +0.6
9,744 + -0.0
9,744 + -0.1
9,754 - +0.6
9,756 + +0.5
9,756 + +0.5
9,756 + -0.7
9,756 + +0.6
9,756 + +0.5
9,756 + +0.4
9,756 + +2.0
9,756 + +0.2
9,756 + +1.3
9,757 - +0.1
9,757 - +1.0
9,757 - -1.5
9,757 - +0.5
9,757 - +1.0
9,757 - +0.1
9,757 - +0.7
9,764 + +0.3
9,765 - -0.8
9,781 - NOLOHH_00105 0.11 -0.0
9,792 + NOLOHH_00105 0.16 +0.2
9,816 + NOLOHH_00105 0.27 -1.7
9,816 + NOLOHH_00105 0.27 -1.4
9,816 + NOLOHH_00105 0.27 +0.1
9,817 - NOLOHH_00105 0.28 -1.1
9,817 - NOLOHH_00105 0.28 +0.3
9,898 + NOLOHH_00105 0.65 +0.6
9,898 + NOLOHH_00105 0.65 -0.5
9,898 + NOLOHH_00105 0.65 +0.5
9,898 + NOLOHH_00105 0.65 -0.6
9,899 - NOLOHH_00105 0.66 +0.4
9,905 - NOLOHH_00105 0.69 +0.8
9,905 - NOLOHH_00105 0.69 +0.8
9,926 + NOLOHH_00105 0.78 -0.7
9,963 - +1.6
9,967 + +0.2
9,967 + -0.4
9,967 + +0.0
9,967 + -0.1
9,967 + +0.1
9,967 + +0.4
9,967 + +0.7
9,967 + +0.1
9,967 + -0.2
9,967 + -0.7
9,967 + -0.3
9,967 + +0.0
9,967 + +0.9
9,968 - +0.3
9,968 - -0.1
9,968 - +0.4
9,968 - -0.0
10,005 + -0.8
10,005 + -0.9
10,005 + +1.2
10,013 - -1.3
10,082 - -0.5
10,082 - +0.8
10,082 - +0.2
10,145 + +0.1
10,156 + -0.8
10,156 + -0.0
10,157 - +0.2
10,157 - +0.2
10,157 - -0.0
10,157 - +0.3
10,162 + +1.1
10,162 + -0.3
10,162 + +0.3
10,162 + +0.6
10,162 + -0.4
10,162 + +0.3
10,162 + +0.6
10,162 + +0.6
10,162 + -0.2
10,163 - +0.0
10,163 - +0.0
10,163 - +0.7
10,167 + +0.7
10,171 + -0.2
10,172 - +1.3
10,192 + -0.8
10,238 + -0.1
10,249 + NOLOHH_00110 0.10 +0.1
10,249 + NOLOHH_00110 0.10 +0.1
10,296 - NOLOHH_00110 0.16 -0.3
10,296 - NOLOHH_00110 0.16 +1.0
10,296 - NOLOHH_00110 0.16 +0.7
10,296 - NOLOHH_00110 0.16 -0.3
10,314 + NOLOHH_00110 0.18 +0.0
10,314 + NOLOHH_00110 0.18 +0.6
10,314 + NOLOHH_00110 0.18 +0.0
10,317 + NOLOHH_00110 0.19 -0.4
10,317 + NOLOHH_00110 0.19 -0.2
10,317 + NOLOHH_00110 0.19 -0.2
10,317 + NOLOHH_00110 0.19 +0.8
10,317 + NOLOHH_00110 0.19 +0.1
10,317 + NOLOHH_00110 0.19 -0.1
10,317 + NOLOHH_00110 0.19 +0.2
10,317 + NOLOHH_00110 0.19 -1.3
10,317 + NOLOHH_00110 0.19 -0.3
10,317 + NOLOHH_00110 0.19 +0.5
10,317 + NOLOHH_00110 0.19 +0.6
10,317 + NOLOHH_00110 0.19 +0.2
10,318 - NOLOHH_00110 0.19 -0.3
10,318 - NOLOHH_00110 0.19 +1.0
10,318 - NOLOHH_00110 0.19 -0.3
10,376 - NOLOHH_00110 0.26 +1.5
10,385 - NOLOHH_00110 0.27 -0.1
10,468 + NOLOHH_00110 0.37 -0.3
10,468 + NOLOHH_00110 0.37 +0.2
10,468 + NOLOHH_00110 0.37 -0.1
10,468 + NOLOHH_00110 0.37 -0.7
10,468 + NOLOHH_00110 0.37 +0.2
10,468 + NOLOHH_00110 0.37 -0.0
10,469 - NOLOHH_00110 0.37 +1.1
10,469 - NOLOHH_00110 0.37 -0.3
10,512 + NOLOHH_00110 0.42 -0.6
10,512 + NOLOHH_00110 0.42 +0.6
10,513 - NOLOHH_00110 0.42 +0.4
10,513 - NOLOHH_00110 0.42 +0.3
10,539 + NOLOHH_00110 0.46 -0.5
10,570 + NOLOHH_00110 0.49 +0.4
10,603 + NOLOHH_00110 0.53 -0.4
10,603 + NOLOHH_00110 0.53 -0.8
10,664 - NOLOHH_00110 0.61 +1.3

Or see this region's nucleotide sequence