Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_00080 and NOLOHH_00085 are separated by 32 nucleotides NOLOHH_00085 and NOLOHH_00090 overlap by 20 nucleotides NOLOHH_00090 and NOLOHH_00095 are separated by 614 nucleotides
NOLOHH_00080: NOLOHH_00080 - Resolvase/invertase-type recombinase catalytic domain-containing protein, at 6,074 to 6,658
_00080
NOLOHH_00085: NOLOHH_00085 - replication protein, at 6,691 to 7,578
_00085
NOLOHH_00090: NOLOHH_00090 - hypothetical protein, at 7,559 to 7,741
_00090
NOLOHH_00095: NOLOHH_00095 - DUF192 domain-containing protein, at 8,356 to 8,775
_00095
Position (kb)
7
8 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6.559 kb on + strand, within NOLOHH_00080 at 6.601 kb on + strand at 6.601 kb on + strand at 6.623 kb on + strand at 6.624 kb on - strand at 6.631 kb on + strand at 6.631 kb on + strand at 6.631 kb on + strand at 6.631 kb on + strand at 6.631 kb on + strand at 6.631 kb on + strand at 6.631 kb on + strand at 6.631 kb on + strand at 6.631 kb on + strand at 6.631 kb on + strand at 6.631 kb on + strand at 6.631 kb on + strand at 6.631 kb on + strand at 6.631 kb on + strand at 6.631 kb on + strand at 6.632 kb on - strand at 6.632 kb on - strand at 6.632 kb on - strand at 6.632 kb on - strand at 6.632 kb on - strand at 6.632 kb on - strand at 6.632 kb on - strand at 6.632 kb on - strand at 6.632 kb on - strand at 6.632 kb on - strand at 6.632 kb on - strand at 6.632 kb on - strand at 6.632 kb on - strand at 6.632 kb on - strand at 6.632 kb on - strand at 6.632 kb on - strand at 6.632 kb on - strand at 6.632 kb on - strand at 6.633 kb on + strand at 6.633 kb on + strand at 6.633 kb on + strand at 6.633 kb on + strand at 6.633 kb on + strand at 6.634 kb on - strand at 6.634 kb on - strand at 6.657 kb on - strand at 7.598 kb on - strand, within NOLOHH_00090 at 8.028 kb on + strand at 8.140 kb on + strand at 8.140 kb on + strand at 8.140 kb on + strand at 8.140 kb on + strand at 8.140 kb on + strand at 8.140 kb on + strand at 8.144 kb on + strand at 8.152 kb on + strand at 8.225 kb on + strand at 8.225 kb on + strand at 8.225 kb on + strand at 8.225 kb on + strand at 8.225 kb on + strand at 8.225 kb on + strand at 8.260 kb on + strand at 8.260 kb on + strand at 8.276 kb on + strand at 8.276 kb on + strand at 8.276 kb on + strand at 8.276 kb on + strand at 8.276 kb on + strand at 8.276 kb on + strand at 8.276 kb on + strand at 8.277 kb on - strand at 8.277 kb on - strand at 8.277 kb on - strand at 8.278 kb on + strand at 8.278 kb on + strand at 8.296 kb on + strand at 8.376 kb on + strand at 8.376 kb on + strand at 8.398 kb on + strand, within NOLOHH_00095 at 8.447 kb on + strand, within NOLOHH_00095 at 8.447 kb on + strand, within NOLOHH_00095 at 8.447 kb on + strand, within NOLOHH_00095 at 8.447 kb on + strand, within NOLOHH_00095 at 8.447 kb on + strand, within NOLOHH_00095 at 8.451 kb on + strand, within NOLOHH_00095 at 8.451 kb on + strand, within NOLOHH_00095 at 8.451 kb on + strand, within NOLOHH_00095 at 8.451 kb on + strand, within NOLOHH_00095 at 8.456 kb on + strand, within NOLOHH_00095 at 8.493 kb on + strand, within NOLOHH_00095 at 8.493 kb on + strand, within NOLOHH_00095 at 8.493 kb on + strand, within NOLOHH_00095 at 8.493 kb on + strand, within NOLOHH_00095 at 8.586 kb on + strand, within NOLOHH_00095 at 8.625 kb on + strand, within NOLOHH_00095 at 8.669 kb on + strand, within NOLOHH_00095 at 8.669 kb on + strand, within NOLOHH_00095 at 8.669 kb on + strand, within NOLOHH_00095 at 8.669 kb on + strand, within NOLOHH_00095
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 6,559 + NOLOHH_00080 0.83 -0.2 6,601 + +0.3 6,601 + +0.6 6,623 + +0.2 6,624 - -0.1 6,631 + -1.0 6,631 + -1.2 6,631 + +0.6 6,631 + -1.2 6,631 + -0.2 6,631 + +0.2 6,631 + +0.1 6,631 + +1.0 6,631 + -0.0 6,631 + -0.4 6,631 + -0.9 6,631 + +0.1 6,631 + +2.6 6,631 + +0.2 6,631 + +1.1 6,632 - +0.4 6,632 - -0.6 6,632 - +0.4 6,632 - -1.0 6,632 - +0.0 6,632 - +0.2 6,632 - +0.0 6,632 - +1.2 6,632 - +0.6 6,632 - -0.2 6,632 - -0.3 6,632 - +1.4 6,632 - -0.0 6,632 - -0.6 6,632 - +0.6 6,632 - -0.7 6,632 - +0.1 6,632 - +0.5 6,633 + -0.5 6,633 + -0.1 6,633 + -0.2 6,633 + +0.3 6,633 + -0.0 6,634 - +0.2 6,634 - -0.0 6,657 - +0.5 7,598 - NOLOHH_00090 0.21 -0.3 8,028 + +0.0 8,140 + -0.1 8,140 + +1.0 8,140 + -0.1 8,140 + -0.4 8,140 + +0.5 8,140 + +1.3 8,144 + -0.1 8,152 + +0.4 8,225 + +0.6 8,225 + -0.3 8,225 + +0.1 8,225 + +1.0 8,225 + -1.0 8,225 + +0.4 8,260 + -1.1 8,260 + +0.6 8,276 + -0.2 8,276 + -1.4 8,276 + +0.3 8,276 + -2.2 8,276 + -0.2 8,276 + +0.3 8,276 + +0.0 8,277 - +0.6 8,277 - -0.3 8,277 - +0.1 8,278 + +0.8 8,278 + +0.5 8,296 + +0.3 8,376 + +0.0 8,376 + -0.6 8,398 + NOLOHH_00095 0.10 -1.5 8,447 + NOLOHH_00095 0.22 -0.8 8,447 + NOLOHH_00095 0.22 -0.1 8,447 + NOLOHH_00095 0.22 -0.4 8,447 + NOLOHH_00095 0.22 -1.1 8,447 + NOLOHH_00095 0.22 -0.3 8,451 + NOLOHH_00095 0.23 +0.3 8,451 + NOLOHH_00095 0.23 +0.1 8,451 + NOLOHH_00095 0.23 -1.5 8,451 + NOLOHH_00095 0.23 +0.7 8,456 + NOLOHH_00095 0.24 -0.4 8,493 + NOLOHH_00095 0.33 +0.4 8,493 + NOLOHH_00095 0.33 +0.2 8,493 + NOLOHH_00095 0.33 +0.4 8,493 + NOLOHH_00095 0.33 +0.7 8,586 + NOLOHH_00095 0.55 -1.0 8,625 + NOLOHH_00095 0.64 +0.8 8,669 + NOLOHH_00095 0.75 +1.0 8,669 + NOLOHH_00095 0.75 -1.1 8,669 + NOLOHH_00095 0.75 +0.2 8,669 + NOLOHH_00095 0.75 +0.0
Or see this region's nucleotide sequence