Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mazF and NOLOHH_00060 overlap by 11 nucleotides NOLOHH_00060 and NOLOHH_00065 are separated by 11 nucleotides NOLOHH_00065 and NOLOHH_00070 are separated by 31 nucleotides NOLOHH_00070 and NOLOHH_00075 are separated by 150 nucleotides NOLOHH_00075 and NOLOHH_00080 overlap by 1 nucleotides NOLOHH_00080 and NOLOHH_00085 are separated by 32 nucleotides
NOLOHH_00055: mazF - endoribonuclease MazF, at 4,670 to 4,996
mazF
NOLOHH_00060: NOLOHH_00060 - hypothetical protein, at 4,986 to 5,243
_00060
NOLOHH_00065: NOLOHH_00065 - PbsX family transcriptional regulator, at 5,255 to 5,500
_00065
NOLOHH_00070: NOLOHH_00070 - hypothetical protein, at 5,532 to 5,738
_00070
NOLOHH_00075: NOLOHH_00075 - hypothetical protein, at 5,889 to 6,074
_00075
NOLOHH_00080: NOLOHH_00080 - Resolvase/invertase-type recombinase catalytic domain-containing protein, at 6,074 to 6,658
_00080
NOLOHH_00085: NOLOHH_00085 - replication protein, at 6,691 to 7,578
_00085
Position (kb) 5
6
7 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5.016 kb on - strand, within NOLOHH_00060 at 5.017 kb on + strand, within NOLOHH_00060 at 5.030 kb on + strand, within NOLOHH_00060 at 5.098 kb on - strand, within NOLOHH_00060 at 5.190 kb on - strand, within NOLOHH_00060 at 5.505 kb on + strand at 5.530 kb on - strand at 5.530 kb on - strand at 5.530 kb on - strand at 5.551 kb on + strand at 5.552 kb on - strand at 5.621 kb on + strand, within NOLOHH_00070 at 5.644 kb on + strand, within NOLOHH_00070 at 5.645 kb on - strand, within NOLOHH_00070 at 5.645 kb on - strand, within NOLOHH_00070 at 5.645 kb on - strand, within NOLOHH_00070 at 5.695 kb on - strand, within NOLOHH_00070 at 5.726 kb on + strand at 5.727 kb on - strand at 5.727 kb on - strand at 5.727 kb on - strand at 5.743 kb on + strand at 5.743 kb on + strand at 5.744 kb on - strand at 5.779 kb on - strand at 5.878 kb on + strand at 5.878 kb on + strand at 5.878 kb on + strand at 5.878 kb on + strand at 5.878 kb on + strand at 5.879 kb on - strand at 5.879 kb on - strand at 5.879 kb on - strand at 5.882 kb on - strand at 5.882 kb on - strand at 5.882 kb on - strand at 5.913 kb on - strand, within NOLOHH_00075 at 5.948 kb on + strand, within NOLOHH_00075 at 5.948 kb on + strand, within NOLOHH_00075 at 5.949 kb on - strand, within NOLOHH_00075 at 5.949 kb on - strand, within NOLOHH_00075 at 5.949 kb on - strand, within NOLOHH_00075 at 5.954 kb on - strand, within NOLOHH_00075 at 5.965 kb on + strand, within NOLOHH_00075 at 5.966 kb on - strand, within NOLOHH_00075 at 5.966 kb on - strand, within NOLOHH_00075 at 5.972 kb on + strand, within NOLOHH_00075 at 5.972 kb on + strand, within NOLOHH_00075 at 5.972 kb on + strand, within NOLOHH_00075 at 5.973 kb on - strand, within NOLOHH_00075 at 5.973 kb on - strand, within NOLOHH_00075 at 5.976 kb on + strand, within NOLOHH_00075 at 5.976 kb on + strand, within NOLOHH_00075 at 5.976 kb on + strand, within NOLOHH_00075 at 5.976 kb on + strand, within NOLOHH_00075 at 5.977 kb on - strand, within NOLOHH_00075 at 5.980 kb on + strand, within NOLOHH_00075 at 5.980 kb on + strand, within NOLOHH_00075 at 5.980 kb on + strand, within NOLOHH_00075 at 5.980 kb on + strand, within NOLOHH_00075 at 5.980 kb on + strand, within NOLOHH_00075 at 5.980 kb on + strand, within NOLOHH_00075 at 5.980 kb on + strand, within NOLOHH_00075 at 5.980 kb on + strand, within NOLOHH_00075 at 5.981 kb on - strand, within NOLOHH_00075 at 5.981 kb on - strand, within NOLOHH_00075 at 5.981 kb on - strand, within NOLOHH_00075 at 5.992 kb on + strand, within NOLOHH_00075 at 5.992 kb on + strand, within NOLOHH_00075 at 5.993 kb on - strand, within NOLOHH_00075 at 5.995 kb on + strand, within NOLOHH_00075 at 5.995 kb on + strand, within NOLOHH_00075 at 5.995 kb on + strand, within NOLOHH_00075 at 5.996 kb on - strand, within NOLOHH_00075 at 5.996 kb on - strand, within NOLOHH_00075 at 5.996 kb on - strand, within NOLOHH_00075 at 5.996 kb on - strand, within NOLOHH_00075 at 6.009 kb on - strand, within NOLOHH_00075 at 6.042 kb on + strand, within NOLOHH_00075 at 6.043 kb on - strand, within NOLOHH_00075 at 6.043 kb on - strand, within NOLOHH_00075 at 6.043 kb on - strand, within NOLOHH_00075 at 6.043 kb on - strand, within NOLOHH_00075 at 6.115 kb on + strand at 6.115 kb on + strand at 6.115 kb on + strand at 6.115 kb on + strand at 6.115 kb on + strand at 6.115 kb on + strand at 6.115 kb on + strand at 6.115 kb on + strand at 6.116 kb on - strand at 6.128 kb on + strand at 6.128 kb on + strand at 6.128 kb on + strand at 6.128 kb on + strand at 6.170 kb on + strand, within NOLOHH_00080 at 6.273 kb on + strand, within NOLOHH_00080 at 6.273 kb on + strand, within NOLOHH_00080 at 6.273 kb on + strand, within NOLOHH_00080 at 6.333 kb on + strand, within NOLOHH_00080 at 6.333 kb on + strand, within NOLOHH_00080 at 6.333 kb on + strand, within NOLOHH_00080 at 6.333 kb on + strand, within NOLOHH_00080 at 6.334 kb on - strand, within NOLOHH_00080 at 6.337 kb on + strand, within NOLOHH_00080 at 6.337 kb on + strand, within NOLOHH_00080 at 6.337 kb on + strand, within NOLOHH_00080 at 6.337 kb on + strand, within NOLOHH_00080 at 6.338 kb on - strand, within NOLOHH_00080 at 6.338 kb on - strand, within NOLOHH_00080 at 6.338 kb on - strand, within NOLOHH_00080 at 6.404 kb on + strand, within NOLOHH_00080 at 6.404 kb on + strand, within NOLOHH_00080 at 6.404 kb on + strand, within NOLOHH_00080 at 6.404 kb on + strand, within NOLOHH_00080 at 6.404 kb on + strand, within NOLOHH_00080 at 6.407 kb on + strand, within NOLOHH_00080 at 6.535 kb on + strand, within NOLOHH_00080 at 6.538 kb on - strand, within NOLOHH_00080 at 6.559 kb on + strand, within NOLOHH_00080 at 6.601 kb on + strand at 6.601 kb on + strand at 6.623 kb on + strand at 6.624 kb on - strand at 6.631 kb on + strand at 6.631 kb on + strand at 6.631 kb on + strand at 6.631 kb on + strand at 6.631 kb on + strand at 6.631 kb on + strand at 6.631 kb on + strand at 6.631 kb on + strand at 6.631 kb on + strand at 6.631 kb on + strand at 6.631 kb on + strand at 6.631 kb on + strand at 6.631 kb on + strand at 6.631 kb on + strand at 6.631 kb on + strand at 6.632 kb on - strand at 6.632 kb on - strand at 6.632 kb on - strand at 6.632 kb on - strand at 6.632 kb on - strand at 6.632 kb on - strand at 6.632 kb on - strand at 6.632 kb on - strand at 6.632 kb on - strand at 6.632 kb on - strand at 6.632 kb on - strand at 6.632 kb on - strand at 6.632 kb on - strand at 6.632 kb on - strand at 6.632 kb on - strand at 6.632 kb on - strand at 6.632 kb on - strand at 6.632 kb on - strand at 6.633 kb on + strand at 6.633 kb on + strand at 6.633 kb on + strand at 6.633 kb on + strand at 6.633 kb on + strand at 6.634 kb on - strand at 6.634 kb on - strand at 6.657 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 5,016 - NOLOHH_00060 0.12 +0.4 5,017 + NOLOHH_00060 0.12 +0.2 5,030 + NOLOHH_00060 0.17 +0.1 5,098 - NOLOHH_00060 0.43 +0.6 5,190 - NOLOHH_00060 0.79 +1.0 5,505 + +0.7 5,530 - -0.1 5,530 - +0.2 5,530 - +0.7 5,551 + -0.2 5,552 - -0.9 5,621 + NOLOHH_00070 0.43 -0.7 5,644 + NOLOHH_00070 0.54 -1.2 5,645 - NOLOHH_00070 0.55 +0.0 5,645 - NOLOHH_00070 0.55 +0.2 5,645 - NOLOHH_00070 0.55 +0.2 5,695 - NOLOHH_00070 0.79 +0.3 5,726 + +0.2 5,727 - -0.3 5,727 - -1.1 5,727 - +0.1 5,743 + -0.2 5,743 + +0.1 5,744 - -1.0 5,779 - +0.9 5,878 + -0.8 5,878 + -0.8 5,878 + +1.0 5,878 + -2.0 5,878 + -0.4 5,879 - -0.6 5,879 - +0.5 5,879 - -0.2 5,882 - +0.5 5,882 - +0.2 5,882 - -0.4 5,913 - NOLOHH_00075 0.13 +0.3 5,948 + NOLOHH_00075 0.32 +0.3 5,948 + NOLOHH_00075 0.32 -0.4 5,949 - NOLOHH_00075 0.32 -1.8 5,949 - NOLOHH_00075 0.32 -0.6 5,949 - NOLOHH_00075 0.32 +0.7 5,954 - NOLOHH_00075 0.35 +0.6 5,965 + NOLOHH_00075 0.41 +0.0 5,966 - NOLOHH_00075 0.41 -0.7 5,966 - NOLOHH_00075 0.41 +0.3 5,972 + NOLOHH_00075 0.45 +0.4 5,972 + NOLOHH_00075 0.45 +0.4 5,972 + NOLOHH_00075 0.45 +0.4 5,973 - NOLOHH_00075 0.45 -1.1 5,973 - NOLOHH_00075 0.45 -1.1 5,976 + NOLOHH_00075 0.47 -0.2 5,976 + NOLOHH_00075 0.47 +0.5 5,976 + NOLOHH_00075 0.47 +0.8 5,976 + NOLOHH_00075 0.47 +0.5 5,977 - NOLOHH_00075 0.47 +0.1 5,980 + NOLOHH_00075 0.49 -0.2 5,980 + NOLOHH_00075 0.49 -0.1 5,980 + NOLOHH_00075 0.49 -0.1 5,980 + NOLOHH_00075 0.49 -1.0 5,980 + NOLOHH_00075 0.49 +0.3 5,980 + NOLOHH_00075 0.49 -0.8 5,980 + NOLOHH_00075 0.49 -0.7 5,980 + NOLOHH_00075 0.49 -0.6 5,981 - NOLOHH_00075 0.49 -0.4 5,981 - NOLOHH_00075 0.49 +0.7 5,981 - NOLOHH_00075 0.49 +1.1 5,992 + NOLOHH_00075 0.55 +0.0 5,992 + NOLOHH_00075 0.55 -0.2 5,993 - NOLOHH_00075 0.56 +0.0 5,995 + NOLOHH_00075 0.57 +0.6 5,995 + NOLOHH_00075 0.57 +1.0 5,995 + NOLOHH_00075 0.57 -0.7 5,996 - NOLOHH_00075 0.58 +0.1 5,996 - NOLOHH_00075 0.58 -0.1 5,996 - NOLOHH_00075 0.58 +0.2 5,996 - NOLOHH_00075 0.58 +0.2 6,009 - NOLOHH_00075 0.65 -0.9 6,042 + NOLOHH_00075 0.82 +0.7 6,043 - NOLOHH_00075 0.83 -0.2 6,043 - NOLOHH_00075 0.83 -0.0 6,043 - NOLOHH_00075 0.83 -1.2 6,043 - NOLOHH_00075 0.83 -0.6 6,115 + +0.1 6,115 + +0.2 6,115 + +0.1 6,115 + -0.3 6,115 + +1.2 6,115 + +0.0 6,115 + -1.0 6,115 + -0.3 6,116 - +0.1 6,128 + +0.0 6,128 + +0.7 6,128 + +0.1 6,128 + -1.4 6,170 + NOLOHH_00080 0.16 +0.0 6,273 + NOLOHH_00080 0.34 -0.3 6,273 + NOLOHH_00080 0.34 +0.5 6,273 + NOLOHH_00080 0.34 +0.8 6,333 + NOLOHH_00080 0.44 -1.0 6,333 + NOLOHH_00080 0.44 +1.0 6,333 + NOLOHH_00080 0.44 +0.5 6,333 + NOLOHH_00080 0.44 +0.1 6,334 - NOLOHH_00080 0.44 +2.0 6,337 + NOLOHH_00080 0.45 +0.3 6,337 + NOLOHH_00080 0.45 -0.7 6,337 + NOLOHH_00080 0.45 +0.3 6,337 + NOLOHH_00080 0.45 +0.5 6,338 - NOLOHH_00080 0.45 +0.9 6,338 - NOLOHH_00080 0.45 +1.0 6,338 - NOLOHH_00080 0.45 +2.0 6,404 + NOLOHH_00080 0.56 +0.3 6,404 + NOLOHH_00080 0.56 -0.2 6,404 + NOLOHH_00080 0.56 +0.7 6,404 + NOLOHH_00080 0.56 +0.3 6,404 + NOLOHH_00080 0.56 -0.3 6,407 + NOLOHH_00080 0.57 +0.3 6,535 + NOLOHH_00080 0.79 -0.3 6,538 - NOLOHH_00080 0.79 -0.0 6,559 + NOLOHH_00080 0.83 -0.2 6,601 + +0.3 6,601 + +0.6 6,623 + +0.2 6,624 - -0.1 6,631 + -1.0 6,631 + -1.2 6,631 + +0.6 6,631 + -1.2 6,631 + -0.2 6,631 + +0.2 6,631 + +0.1 6,631 + +1.0 6,631 + -0.0 6,631 + -0.4 6,631 + -0.9 6,631 + +0.1 6,631 + +2.6 6,631 + +0.2 6,631 + +1.1 6,632 - +0.4 6,632 - -0.6 6,632 - +0.4 6,632 - -1.0 6,632 - +0.0 6,632 - +0.2 6,632 - +0.0 6,632 - +1.2 6,632 - +0.6 6,632 - -0.2 6,632 - -0.3 6,632 - +1.4 6,632 - -0.0 6,632 - -0.6 6,632 - +0.6 6,632 - -0.7 6,632 - +0.1 6,632 - +0.5 6,633 + -0.5 6,633 + -0.1 6,633 + -0.2 6,633 + +0.3 6,633 + -0.0 6,634 - +0.2 6,634 - -0.0 6,657 - +0.5
Or see this region's nucleotide sequence