Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06966

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06964 and MPMX19_06965 are separated by 441 nucleotidesMPMX19_06965 and MPMX19_06966 are separated by 62 nucleotidesMPMX19_06966 and MPMX19_06967 are separated by 138 nucleotides MPMX19_06964: MPMX19_06964 - HTH-type transcriptional regulator KipR, at 241,692 to 242,456 _06964 MPMX19_06965: MPMX19_06965 - hypothetical protein, at 242,898 to 243,314 _06965 MPMX19_06966: MPMX19_06966 - hypothetical protein, at 243,377 to 244,135 _06966 MPMX19_06967: MPMX19_06967 - hypothetical protein, at 244,274 to 245,032 _06967 Position (kb) 243 244 245Strain fitness (log2 ratio) -2 -1 0 1at 242.454 kb on + strandat 242.454 kb on + strandat 242.454 kb on + strandat 242.455 kb on - strandat 242.455 kb on - strandat 242.897 kb on - strandat 243.312 kb on + strandat 243.312 kb on + strandat 243.313 kb on - strandat 243.313 kb on - strandat 243.313 kb on - strandat 243.398 kb on + strandat 243.398 kb on + strandat 243.399 kb on - strandat 243.399 kb on - strandat 243.399 kb on - strandat 243.603 kb on + strand, within MPMX19_06966at 243.628 kb on + strand, within MPMX19_06966at 243.716 kb on - strand, within MPMX19_06966at 243.773 kb on - strand, within MPMX19_06966at 243.776 kb on + strand, within MPMX19_06966at 243.780 kb on + strand, within MPMX19_06966at 244.109 kb on + strandat 244.109 kb on + strandat 244.141 kb on + strandat 244.141 kb on + strandat 244.141 kb on + strandat 244.142 kb on - strandat 244.142 kb on - strandat 244.142 kb on - strandat 244.142 kb on - strandat 244.242 kb on - strandat 244.242 kb on - strandat 244.242 kb on - strandat 244.242 kb on - strandat 244.295 kb on + strandat 244.295 kb on + strandat 244.295 kb on + strandat 244.295 kb on + strandat 244.295 kb on + strandat 244.295 kb on + strandat 244.296 kb on - strandat 244.296 kb on - strandat 244.296 kb on - strandat 244.296 kb on - strandat 244.296 kb on - strandat 244.296 kb on - strandat 244.296 kb on - strandat 244.296 kb on - strandat 244.297 kb on + strandat 244.297 kb on + strandat 244.298 kb on - strandat 244.516 kb on + strand, within MPMX19_06967at 244.557 kb on + strand, within MPMX19_06967at 244.624 kb on + strand, within MPMX19_06967at 244.726 kb on - strand, within MPMX19_06967at 245.006 kb on + strandat 245.006 kb on + strandat 245.006 kb on + strandat 245.006 kb on + strandat 245.006 kb on + strandat 245.006 kb on + strandat 245.006 kb on + strandat 245.006 kb on + strandat 245.007 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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242,454 + -0.3
242,454 + -1.1
242,454 + +1.2
242,455 - -1.2
242,455 - +0.1
242,897 - -0.1
243,312 + -0.6
243,312 + -0.5
243,313 - +0.1
243,313 - -0.7
243,313 - -1.3
243,398 + -1.3
243,398 + -0.6
243,399 - -0.7
243,399 - -1.3
243,399 - -0.5
243,603 + MPMX19_06966 0.30 -0.8
243,628 + MPMX19_06966 0.33 -1.5
243,716 - MPMX19_06966 0.45 -1.0
243,773 - MPMX19_06966 0.52 -1.5
243,776 + MPMX19_06966 0.53 -0.2
243,780 + MPMX19_06966 0.53 -0.2
244,109 + +0.8
244,109 + +1.3
244,141 + -1.3
244,141 + -0.7
244,141 + -1.5
244,142 - -0.8
244,142 - -0.6
244,142 - -1.8
244,142 - -1.2
244,242 - +0.3
244,242 - +0.5
244,242 - +0.8
244,242 - -2.2
244,295 + -1.1
244,295 + -0.2
244,295 + -0.6
244,295 + -1.4
244,295 + +0.5
244,295 + -1.4
244,296 - -1.7
244,296 - -0.8
244,296 - -0.5
244,296 - +0.2
244,296 - -1.3
244,296 - +0.8
244,296 - -1.8
244,296 - +1.2
244,297 + -1.8
244,297 + +0.2
244,298 - +0.2
244,516 + MPMX19_06967 0.32 +0.2
244,557 + MPMX19_06967 0.37 -0.4
244,624 + MPMX19_06967 0.46 +0.4
244,726 - MPMX19_06967 0.60 -0.5
245,006 + -0.5
245,006 + +1.1
245,006 + -2.2
245,006 + +0.8
245,006 + -1.5
245,006 + -0.1
245,006 + +0.1
245,006 + -0.1
245,007 - +0.3

Or see this region's nucleotide sequence