Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05747

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05746 and MPMX19_05747 are separated by 147 nucleotidesMPMX19_05747 and MPMX19_05748 are separated by 315 nucleotidesMPMX19_05748 and MPMX19_05749 overlap by 4 nucleotides MPMX19_05746: MPMX19_05746 - hypothetical protein, at 466,052 to 467,893 _05746 MPMX19_05747: MPMX19_05747 - Transcriptional regulatory protein DegU, at 468,041 to 468,763 _05747 MPMX19_05748: MPMX19_05748 - Response regulator SaeR, at 469,079 to 469,543 _05748 MPMX19_05749: MPMX19_05749 - Cyclic di-GMP phosphodiesterase response regulator RpfG, at 469,540 to 470,607 _05749 Position (kb) 468 469Strain fitness (log2 ratio) -2 -1 0 1 2at 467.292 kb on + strand, within MPMX19_05746at 467.292 kb on + strand, within MPMX19_05746at 467.292 kb on + strand, within MPMX19_05746at 467.292 kb on + strand, within MPMX19_05746at 467.293 kb on - strand, within MPMX19_05746at 467.293 kb on - strand, within MPMX19_05746at 467.293 kb on - strand, within MPMX19_05746at 467.293 kb on - strand, within MPMX19_05746at 467.293 kb on - strand, within MPMX19_05746at 467.343 kb on + strand, within MPMX19_05746at 467.343 kb on + strand, within MPMX19_05746at 467.343 kb on + strand, within MPMX19_05746at 467.344 kb on - strand, within MPMX19_05746at 467.344 kb on - strand, within MPMX19_05746at 467.344 kb on - strand, within MPMX19_05746at 467.344 kb on - strand, within MPMX19_05746at 467.344 kb on - strand, within MPMX19_05746at 467.807 kb on + strandat 467.808 kb on - strandat 467.848 kb on + strandat 467.848 kb on + strandat 467.848 kb on + strandat 467.848 kb on + strandat 467.848 kb on + strandat 467.848 kb on + strandat 467.848 kb on + strandat 467.848 kb on + strandat 467.848 kb on + strandat 467.848 kb on + strandat 467.848 kb on + strandat 467.848 kb on + strandat 467.848 kb on + strandat 467.848 kb on + strandat 467.849 kb on - strandat 467.849 kb on - strandat 467.849 kb on - strandat 467.849 kb on - strandat 467.849 kb on - strandat 467.849 kb on - strandat 467.849 kb on - strandat 467.849 kb on - strandat 467.849 kb on - strandat 467.849 kb on - strandat 467.849 kb on - strandat 467.849 kb on - strandat 467.849 kb on - strandat 467.849 kb on - strandat 467.849 kb on - strandat 467.883 kb on + strandat 467.906 kb on + strandat 467.913 kb on + strandat 467.913 kb on + strandat 467.914 kb on - strandat 467.966 kb on + strandat 467.966 kb on + strandat 467.966 kb on + strandat 467.967 kb on - strandat 467.967 kb on - strandat 468.004 kb on + strandat 468.004 kb on + strandat 468.004 kb on + strandat 468.004 kb on + strandat 468.005 kb on - strandat 468.005 kb on - strandat 468.601 kb on - strand, within MPMX19_05747at 468.646 kb on + strand, within MPMX19_05747at 468.647 kb on - strand, within MPMX19_05747at 468.802 kb on + strandat 468.802 kb on + strandat 468.802 kb on + strandat 468.803 kb on - strandat 468.803 kb on - strandat 468.803 kb on - strandat 468.803 kb on - strandat 468.805 kb on + strandat 468.805 kb on + strandat 468.806 kb on - strandat 468.806 kb on - strandat 468.821 kb on + strandat 468.821 kb on + strandat 468.821 kb on + strandat 468.821 kb on + strandat 468.822 kb on - strandat 468.822 kb on - strandat 468.822 kb on - strandat 468.822 kb on - strandat 468.823 kb on + strandat 468.823 kb on + strandat 468.823 kb on + strandat 468.824 kb on - strandat 468.824 kb on - strandat 468.824 kb on - strandat 468.857 kb on + strandat 468.858 kb on - strandat 468.875 kb on + strandat 468.875 kb on + strandat 468.875 kb on + strandat 468.875 kb on + strandat 468.876 kb on - strandat 468.876 kb on - strandat 468.876 kb on - strandat 468.876 kb on - strandat 468.876 kb on - strandat 468.892 kb on + strandat 468.892 kb on + strandat 468.892 kb on + strandat 468.892 kb on + strandat 468.893 kb on - strandat 468.893 kb on - strandat 468.893 kb on - strandat 468.893 kb on - strandat 468.937 kb on + strandat 468.937 kb on + strandat 468.937 kb on + strandat 468.940 kb on + strandat 468.941 kb on - strandat 468.941 kb on - strandat 468.941 kb on - strandat 468.941 kb on - strandat 468.941 kb on - strandat 468.942 kb on - strandat 469.008 kb on + strandat 469.008 kb on + strandat 469.021 kb on - strandat 469.214 kb on + strand, within MPMX19_05748at 469.214 kb on + strand, within MPMX19_05748at 469.214 kb on + strand, within MPMX19_05748at 469.215 kb on - strand, within MPMX19_05748at 469.215 kb on - strand, within MPMX19_05748at 469.215 kb on - strand, within MPMX19_05748at 469.319 kb on + strand, within MPMX19_05748at 469.536 kb on + strandat 469.536 kb on + strandat 469.536 kb on + strandat 469.536 kb on + strandat 469.536 kb on + strandat 469.536 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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467,292 + MPMX19_05746 0.67 -0.2
467,292 + MPMX19_05746 0.67 -0.2
467,292 + MPMX19_05746 0.67 -0.6
467,292 + MPMX19_05746 0.67 +0.4
467,293 - MPMX19_05746 0.67 +1.6
467,293 - MPMX19_05746 0.67 -2.0
467,293 - MPMX19_05746 0.67 +0.4
467,293 - MPMX19_05746 0.67 +0.5
467,293 - MPMX19_05746 0.67 +0.0
467,343 + MPMX19_05746 0.70 -0.4
467,343 + MPMX19_05746 0.70 +2.4
467,343 + MPMX19_05746 0.70 -0.7
467,344 - MPMX19_05746 0.70 -1.3
467,344 - MPMX19_05746 0.70 +0.8
467,344 - MPMX19_05746 0.70 -0.8
467,344 - MPMX19_05746 0.70 +0.4
467,344 - MPMX19_05746 0.70 +0.8
467,807 + -2.4
467,808 - +0.1
467,848 + -0.2
467,848 + +0.5
467,848 + -1.2
467,848 + +0.0
467,848 + +0.4
467,848 + -0.2
467,848 + -1.2
467,848 + -0.9
467,848 + +0.5
467,848 + -0.3
467,848 + -0.8
467,848 + +0.0
467,848 + -0.2
467,848 + -0.5
467,849 - -1.2
467,849 - +0.3
467,849 - -2.2
467,849 - +0.5
467,849 - +0.5
467,849 - -1.2
467,849 - +0.2
467,849 - +2.5
467,849 - -0.2
467,849 - -0.5
467,849 - +1.8
467,849 - -0.2
467,849 - -0.5
467,849 - +0.8
467,849 - +0.2
467,883 + +1.5
467,906 + -0.8
467,913 + -1.2
467,913 + +0.8
467,914 - -0.2
467,966 + +1.5
467,966 + -0.4
467,966 + +0.2
467,967 - -0.6
467,967 - -0.8
468,004 + -0.8
468,004 + -0.2
468,004 + +1.2
468,004 + -0.8
468,005 - -2.2
468,005 - +1.2
468,601 - MPMX19_05747 0.77 -0.7
468,646 + MPMX19_05747 0.84 -1.2
468,647 - MPMX19_05747 0.84 -1.2
468,802 + +0.2
468,802 + -0.7
468,802 + +1.6
468,803 - +0.0
468,803 - +0.2
468,803 - +1.4
468,803 - -1.8
468,805 + +0.3
468,805 + -1.0
468,806 - +0.5
468,806 - -0.2
468,821 + -0.4
468,821 + -0.2
468,821 + -0.3
468,821 + +0.3
468,822 - +1.0
468,822 - -1.2
468,822 - +0.6
468,822 - -1.0
468,823 + +0.4
468,823 + -1.5
468,823 + -1.2
468,824 - -0.2
468,824 - -2.7
468,824 - +0.4
468,857 + -0.8
468,858 - +0.8
468,875 + +1.2
468,875 + +1.8
468,875 + -0.1
468,875 + -1.4
468,876 - -0.9
468,876 - -0.3
468,876 - +0.0
468,876 - -2.4
468,876 - +0.0
468,892 + -0.2
468,892 + -0.5
468,892 + +0.4
468,892 + -0.1
468,893 - +0.3
468,893 - -2.0
468,893 - -2.3
468,893 - -1.8
468,937 + +0.6
468,937 + -0.2
468,937 + -0.6
468,940 + +0.5
468,941 - +1.8
468,941 - +0.4
468,941 - -1.2
468,941 - +1.8
468,941 - +0.0
468,942 - -0.8
469,008 + -1.0
469,008 + +0.5
469,021 - +1.4
469,214 + MPMX19_05748 0.29 -0.2
469,214 + MPMX19_05748 0.29 -0.2
469,214 + MPMX19_05748 0.29 +0.2
469,215 - MPMX19_05748 0.29 +0.3
469,215 - MPMX19_05748 0.29 -1.0
469,215 - MPMX19_05748 0.29 +0.6
469,319 + MPMX19_05748 0.52 +1.0
469,536 + -0.6
469,536 + -1.2
469,536 + -0.4
469,536 + +0.4
469,536 + +0.8
469,536 + -0.6

Or see this region's nucleotide sequence