Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05733

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05731 and MPMX19_05732 are separated by 43 nucleotidesMPMX19_05732 and MPMX19_05733 overlap by 4 nucleotidesMPMX19_05733 and MPMX19_05734 are separated by 5 nucleotides MPMX19_05731: MPMX19_05731 - hypothetical protein, at 449,226 to 450,509 _05731 MPMX19_05732: MPMX19_05732 - hypothetical protein, at 450,553 to 451,422 _05732 MPMX19_05733: MPMX19_05733 - Biopolymer transport protein ExbD, at 451,419 to 451,847 _05733 MPMX19_05734: MPMX19_05734 - Tol-Pal system protein TolQ, at 451,853 to 452,806 _05734 Position (kb) 451 452Strain fitness (log2 ratio) -2 -1 0 1 2at 450.470 kb on - strandat 450.786 kb on - strand, within MPMX19_05732at 451.465 kb on + strand, within MPMX19_05733at 451.465 kb on + strand, within MPMX19_05733at 451.510 kb on + strand, within MPMX19_05733at 451.855 kb on - strandat 451.855 kb on - strandat 452.037 kb on + strand, within MPMX19_05734at 452.037 kb on + strand, within MPMX19_05734at 452.037 kb on + strand, within MPMX19_05734at 452.037 kb on + strand, within MPMX19_05734at 452.037 kb on + strand, within MPMX19_05734at 452.037 kb on + strand, within MPMX19_05734at 452.037 kb on + strand, within MPMX19_05734at 452.037 kb on + strand, within MPMX19_05734at 452.038 kb on - strand, within MPMX19_05734at 452.038 kb on - strand, within MPMX19_05734at 452.038 kb on - strand, within MPMX19_05734at 452.038 kb on - strand, within MPMX19_05734at 452.038 kb on - strand, within MPMX19_05734at 452.038 kb on - strand, within MPMX19_05734at 452.038 kb on - strand, within MPMX19_05734at 452.038 kb on - strand, within MPMX19_05734at 452.038 kb on - strand, within MPMX19_05734at 452.038 kb on - strand, within MPMX19_05734at 452.038 kb on - strand, within MPMX19_05734at 452.747 kb on + strandat 452.748 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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450,470 - +0.3
450,786 - MPMX19_05732 0.27 +0.2
451,465 + MPMX19_05733 0.11 +1.8
451,465 + MPMX19_05733 0.11 +1.6
451,510 + MPMX19_05733 0.21 -0.3
451,855 - -0.8
451,855 - -0.5
452,037 + MPMX19_05734 0.19 +0.2
452,037 + MPMX19_05734 0.19 -1.0
452,037 + MPMX19_05734 0.19 -1.5
452,037 + MPMX19_05734 0.19 -1.0
452,037 + MPMX19_05734 0.19 -0.5
452,037 + MPMX19_05734 0.19 -0.8
452,037 + MPMX19_05734 0.19 +0.4
452,037 + MPMX19_05734 0.19 +0.7
452,038 - MPMX19_05734 0.19 -0.5
452,038 - MPMX19_05734 0.19 -2.2
452,038 - MPMX19_05734 0.19 +0.0
452,038 - MPMX19_05734 0.19 -0.1
452,038 - MPMX19_05734 0.19 -0.8
452,038 - MPMX19_05734 0.19 +0.3
452,038 - MPMX19_05734 0.19 -1.4
452,038 - MPMX19_05734 0.19 -0.0
452,038 - MPMX19_05734 0.19 -0.8
452,038 - MPMX19_05734 0.19 -1.4
452,038 - MPMX19_05734 0.19 -0.2
452,747 + +1.1
452,748 - -1.7

Or see this region's nucleotide sequence