Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05574 and MPMX19_05575 are separated by 14 nucleotides MPMX19_05575 and MPMX19_05576 are separated by 10 nucleotides MPMX19_05576 and MPMX19_05577 are separated by 598 nucleotides
MPMX19_05574: MPMX19_05574 - hypothetical protein, at 283,885 to 284,946
_05574
MPMX19_05575: MPMX19_05575 - hypothetical protein, at 284,961 to 285,755
_05575
MPMX19_05576: MPMX19_05576 - hypothetical protein, at 285,766 to 285,966
_05576
MPMX19_05577: MPMX19_05577 - Lipopolysaccharide export system ATP-binding protein LptB, at 286,565 to 287,332
_05577
Position (kb) 284
285
286 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 285.437 kb on - strand, within MPMX19_05575 at 285.437 kb on - strand, within MPMX19_05575 at 285.597 kb on - strand, within MPMX19_05575 at 285.597 kb on - strand, within MPMX19_05575 at 285.597 kb on - strand, within MPMX19_05575 at 285.597 kb on - strand, within MPMX19_05575 at 285.638 kb on - strand, within MPMX19_05575 at 285.638 kb on - strand, within MPMX19_05575 at 285.638 kb on - strand, within MPMX19_05575 at 285.638 kb on - strand, within MPMX19_05575 at 285.756 kb on - strand at 285.756 kb on - strand at 285.756 kb on - strand at 285.756 kb on - strand at 285.768 kb on - strand at 285.768 kb on - strand at 285.768 kb on - strand at 285.768 kb on - strand at 285.768 kb on - strand at 285.768 kb on - strand at 285.849 kb on - strand, within MPMX19_05576 at 285.849 kb on - strand, within MPMX19_05576 at 286.112 kb on - strand at 286.112 kb on - strand at 286.112 kb on - strand at 286.112 kb on - strand at 286.112 kb on - strand at 286.180 kb on - strand at 286.180 kb on - strand at 286.180 kb on - strand at 286.180 kb on - strand at 286.180 kb on - strand at 286.180 kb on - strand at 286.180 kb on - strand at 286.180 kb on - strand at 286.183 kb on - strand at 286.183 kb on - strand at 286.361 kb on + strand at 286.476 kb on + strand at 286.476 kb on + strand at 286.521 kb on + strand at 286.521 kb on + strand at 286.521 kb on + strand at 286.521 kb on + strand at 286.521 kb on + strand at 286.521 kb on + strand at 286.521 kb on + strand at 286.521 kb on + strand at 286.521 kb on + strand at 286.521 kb on + strand at 286.521 kb on + strand at 286.521 kb on + strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.534 kb on + strand at 286.534 kb on + strand at 286.534 kb on + strand at 286.534 kb on + strand at 286.535 kb on - strand at 286.535 kb on - strand at 286.535 kb on - strand at 286.535 kb on - strand at 286.535 kb on - strand at 286.535 kb on - strand at 286.535 kb on - strand at 286.535 kb on - strand at 286.535 kb on - strand at 286.535 kb on - strand at 286.535 kb on - strand at 286.535 kb on - strand at 286.535 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 285,437 - MPMX19_05575 0.60 -1.2 285,437 - MPMX19_05575 0.60 -1.0 285,597 - MPMX19_05575 0.80 -0.9 285,597 - MPMX19_05575 0.80 -1.2 285,597 - MPMX19_05575 0.80 -0.6 285,597 - MPMX19_05575 0.80 +1.6 285,638 - MPMX19_05575 0.85 -0.3 285,638 - MPMX19_05575 0.85 -2.8 285,638 - MPMX19_05575 0.85 -0.8 285,638 - MPMX19_05575 0.85 -1.5 285,756 - +0.2 285,756 - +0.8 285,756 - +1.1 285,756 - +0.1 285,768 - -2.2 285,768 - -0.8 285,768 - +0.8 285,768 - +1.1 285,768 - -1.2 285,768 - +0.4 285,849 - MPMX19_05576 0.41 -0.2 285,849 - MPMX19_05576 0.41 -1.5 286,112 - -0.2 286,112 - -0.6 286,112 - -1.2 286,112 - +0.4 286,112 - +0.3 286,180 - -0.2 286,180 - -0.2 286,180 - +0.0 286,180 - +0.6 286,180 - +0.3 286,180 - -2.0 286,180 - +0.3 286,180 - +1.8 286,183 - +0.6 286,183 - -0.2 286,361 + -0.9 286,476 + -0.8 286,476 + -0.3 286,521 + -0.1 286,521 + -1.2 286,521 + -0.2 286,521 + -1.2 286,521 + -1.6 286,521 + +0.5 286,521 + -2.1 286,521 + -1.2 286,521 + +0.6 286,521 + +0.2 286,521 + -0.3 286,521 + -0.8 286,522 - +2.4 286,522 - +0.8 286,522 - +0.4 286,522 - -1.5 286,522 - +1.2 286,522 - +0.8 286,522 - -0.6 286,522 - -0.3 286,522 - -1.5 286,522 - -0.6 286,522 - +0.5 286,522 - +0.5 286,522 - -0.6 286,522 - -1.1 286,522 - +0.1 286,522 - +0.7 286,522 - -1.3 286,522 - +0.6 286,522 - -2.0 286,534 + +0.2 286,534 + +1.0 286,534 + -1.8 286,534 + +1.4 286,535 - -0.8 286,535 - +0.2 286,535 - +0.3 286,535 - +0.8 286,535 - -0.8 286,535 - -0.8 286,535 - -2.3 286,535 - -1.0 286,535 - +0.6 286,535 - +0.4 286,535 - +0.1 286,535 - -0.5 286,535 - -1.2
Or see this region's nucleotide sequence