Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05033

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05032 and MPMX19_05033 overlap by 38 nucleotidesMPMX19_05033 and MPMX19_05034 are separated by 24 nucleotidesMPMX19_05034 and MPMX19_05035 are separated by 5 nucleotidesMPMX19_05035 and MPMX19_05036 overlap by 4 nucleotides MPMX19_05032: MPMX19_05032 - ATP synthase subunit alpha, at 519,206 to 520,735 _05032 MPMX19_05033: MPMX19_05033 - ATP synthase subunit b, at 520,698 to 521,471 _05033 MPMX19_05034: MPMX19_05034 - ATP synthase subunit c, at 521,496 to 521,735 _05034 MPMX19_05035: MPMX19_05035 - ATP synthase subunit a, at 521,741 to 522,415 _05035 MPMX19_05036: MPMX19_05036 - hypothetical protein, at 522,412 to 522,711 _05036 Position (kb) 520 521 522Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 519.720 kb on + strand, within MPMX19_05032at 519.720 kb on + strand, within MPMX19_05032at 519.720 kb on + strand, within MPMX19_05032at 519.720 kb on + strand, within MPMX19_05032at 519.720 kb on + strand, within MPMX19_05032at 519.720 kb on + strand, within MPMX19_05032at 519.720 kb on + strand, within MPMX19_05032at 519.720 kb on + strand, within MPMX19_05032at 519.721 kb on - strand, within MPMX19_05032at 519.721 kb on - strand, within MPMX19_05032at 519.721 kb on - strand, within MPMX19_05032at 519.721 kb on - strand, within MPMX19_05032at 519.721 kb on - strand, within MPMX19_05032at 519.721 kb on - strand, within MPMX19_05032at 519.831 kb on + strand, within MPMX19_05032at 519.831 kb on + strand, within MPMX19_05032at 519.831 kb on + strand, within MPMX19_05032at 519.831 kb on + strand, within MPMX19_05032at 519.831 kb on + strand, within MPMX19_05032at 519.831 kb on + strand, within MPMX19_05032at 519.832 kb on - strand, within MPMX19_05032at 519.832 kb on - strand, within MPMX19_05032at 519.832 kb on - strand, within MPMX19_05032at 519.832 kb on - strand, within MPMX19_05032at 519.987 kb on + strand, within MPMX19_05032at 519.987 kb on + strand, within MPMX19_05032at 519.987 kb on + strand, within MPMX19_05032at 519.988 kb on - strand, within MPMX19_05032at 519.988 kb on - strand, within MPMX19_05032at 519.988 kb on - strand, within MPMX19_05032at 519.988 kb on - strand, within MPMX19_05032at 519.988 kb on - strand, within MPMX19_05032at 520.122 kb on + strand, within MPMX19_05032at 520.122 kb on + strand, within MPMX19_05032at 520.122 kb on + strand, within MPMX19_05032at 520.122 kb on + strand, within MPMX19_05032at 520.122 kb on + strand, within MPMX19_05032at 520.122 kb on + strand, within MPMX19_05032at 520.122 kb on + strand, within MPMX19_05032at 520.122 kb on + strand, within MPMX19_05032at 520.123 kb on - strand, within MPMX19_05032at 520.123 kb on - strand, within MPMX19_05032at 520.123 kb on - strand, within MPMX19_05032at 520.123 kb on - strand, within MPMX19_05032at 520.123 kb on - strand, within MPMX19_05032at 520.123 kb on - strand, within MPMX19_05032at 520.123 kb on - strand, within MPMX19_05032at 521.374 kb on - strand, within MPMX19_05033at 521.545 kb on + strand, within MPMX19_05034at 521.545 kb on + strand, within MPMX19_05034at 521.545 kb on + strand, within MPMX19_05034at 521.546 kb on - strand, within MPMX19_05034at 521.546 kb on - strand, within MPMX19_05034at 521.546 kb on - strand, within MPMX19_05034at 521.546 kb on - strand, within MPMX19_05034at 521.546 kb on - strand, within MPMX19_05034at 521.546 kb on - strand, within MPMX19_05034at 521.546 kb on - strand, within MPMX19_05034at 521.546 kb on - strand, within MPMX19_05034at 521.546 kb on - strand, within MPMX19_05034at 521.742 kb on + strandat 521.743 kb on - strandat 521.743 kb on - strandat 521.743 kb on - strandat 521.805 kb on + strandat 521.805 kb on + strandat 521.805 kb on + strandat 521.805 kb on + strandat 521.805 kb on + strandat 521.805 kb on + strandat 521.805 kb on + strandat 521.806 kb on - strandat 521.806 kb on - strandat 521.806 kb on - strandat 521.806 kb on - strandat 521.806 kb on - strandat 521.806 kb on - strandat 521.806 kb on - strandat 521.806 kb on - strandat 521.806 kb on - strandat 521.806 kb on - strandat 522.012 kb on + strand, within MPMX19_05035at 522.012 kb on + strand, within MPMX19_05035at 522.012 kb on + strand, within MPMX19_05035at 522.012 kb on + strand, within MPMX19_05035at 522.012 kb on + strand, within MPMX19_05035at 522.012 kb on + strand, within MPMX19_05035at 522.013 kb on - strand, within MPMX19_05035at 522.013 kb on - strand, within MPMX19_05035at 522.013 kb on - strand, within MPMX19_05035at 522.013 kb on - strand, within MPMX19_05035at 522.013 kb on - strand, within MPMX19_05035at 522.013 kb on - strand, within MPMX19_05035at 522.013 kb on - strand, within MPMX19_05035at 522.013 kb on - strand, within MPMX19_05035at 522.153 kb on + strand, within MPMX19_05035at 522.153 kb on + strand, within MPMX19_05035at 522.154 kb on - strand, within MPMX19_05035at 522.154 kb on - strand, within MPMX19_05035at 522.154 kb on - strand, within MPMX19_05035

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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519,720 + MPMX19_05032 0.34 +0.5
519,720 + MPMX19_05032 0.34 -0.2
519,720 + MPMX19_05032 0.34 -0.5
519,720 + MPMX19_05032 0.34 -2.0
519,720 + MPMX19_05032 0.34 +0.6
519,720 + MPMX19_05032 0.34 -0.8
519,720 + MPMX19_05032 0.34 -0.8
519,720 + MPMX19_05032 0.34 +0.8
519,721 - MPMX19_05032 0.34 +0.2
519,721 - MPMX19_05032 0.34 -0.3
519,721 - MPMX19_05032 0.34 +0.2
519,721 - MPMX19_05032 0.34 -0.5
519,721 - MPMX19_05032 0.34 +0.0
519,721 - MPMX19_05032 0.34 +1.2
519,831 + MPMX19_05032 0.41 +0.8
519,831 + MPMX19_05032 0.41 -0.6
519,831 + MPMX19_05032 0.41 -0.5
519,831 + MPMX19_05032 0.41 -2.0
519,831 + MPMX19_05032 0.41 +0.5
519,831 + MPMX19_05032 0.41 +1.0
519,832 - MPMX19_05032 0.41 -0.2
519,832 - MPMX19_05032 0.41 +0.0
519,832 - MPMX19_05032 0.41 -1.5
519,832 - MPMX19_05032 0.41 -2.2
519,987 + MPMX19_05032 0.51 +1.0
519,987 + MPMX19_05032 0.51 -0.8
519,987 + MPMX19_05032 0.51 -2.4
519,988 - MPMX19_05032 0.51 +0.5
519,988 - MPMX19_05032 0.51 +0.1
519,988 - MPMX19_05032 0.51 -3.1
519,988 - MPMX19_05032 0.51 -0.2
519,988 - MPMX19_05032 0.51 +0.8
520,122 + MPMX19_05032 0.60 -0.2
520,122 + MPMX19_05032 0.60 -0.0
520,122 + MPMX19_05032 0.60 -0.3
520,122 + MPMX19_05032 0.60 +1.3
520,122 + MPMX19_05032 0.60 +1.2
520,122 + MPMX19_05032 0.60 -0.5
520,122 + MPMX19_05032 0.60 +0.6
520,122 + MPMX19_05032 0.60 -0.4
520,123 - MPMX19_05032 0.60 -0.9
520,123 - MPMX19_05032 0.60 -0.4
520,123 - MPMX19_05032 0.60 +0.2
520,123 - MPMX19_05032 0.60 +0.2
520,123 - MPMX19_05032 0.60 -0.6
520,123 - MPMX19_05032 0.60 -1.8
520,123 - MPMX19_05032 0.60 +1.0
521,374 - MPMX19_05033 0.87 -0.2
521,545 + MPMX19_05034 0.20 +0.4
521,545 + MPMX19_05034 0.20 +0.4
521,545 + MPMX19_05034 0.20 -2.5
521,546 - MPMX19_05034 0.21 +0.3
521,546 - MPMX19_05034 0.21 -1.5
521,546 - MPMX19_05034 0.21 +0.2
521,546 - MPMX19_05034 0.21 -1.0
521,546 - MPMX19_05034 0.21 -0.6
521,546 - MPMX19_05034 0.21 -0.8
521,546 - MPMX19_05034 0.21 -1.8
521,546 - MPMX19_05034 0.21 -0.7
521,546 - MPMX19_05034 0.21 -2.0
521,742 + -0.5
521,743 - -1.0
521,743 - +0.5
521,743 - +0.5
521,805 + -1.0
521,805 + +0.2
521,805 + +0.2
521,805 + +0.3
521,805 + +0.8
521,805 + +1.8
521,805 + -0.4
521,806 - -0.6
521,806 - -0.8
521,806 - -0.3
521,806 - -0.0
521,806 - +0.0
521,806 - +0.9
521,806 - +0.4
521,806 - -0.5
521,806 - -1.5
521,806 - -0.1
522,012 + MPMX19_05035 0.40 +1.0
522,012 + MPMX19_05035 0.40 -0.2
522,012 + MPMX19_05035 0.40 +1.8
522,012 + MPMX19_05035 0.40 +0.8
522,012 + MPMX19_05035 0.40 -1.1
522,012 + MPMX19_05035 0.40 +0.8
522,013 - MPMX19_05035 0.40 -0.2
522,013 - MPMX19_05035 0.40 +0.5
522,013 - MPMX19_05035 0.40 +0.2
522,013 - MPMX19_05035 0.40 -0.6
522,013 - MPMX19_05035 0.40 -0.4
522,013 - MPMX19_05035 0.40 -0.2
522,013 - MPMX19_05035 0.40 -0.8
522,013 - MPMX19_05035 0.40 -0.2
522,153 + MPMX19_05035 0.61 +1.0
522,153 + MPMX19_05035 0.61 -0.1
522,154 - MPMX19_05035 0.61 -0.1
522,154 - MPMX19_05035 0.61 -0.8
522,154 - MPMX19_05035 0.61 +0.2

Or see this region's nucleotide sequence