Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03890

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03889 and MPMX19_03890 are separated by 27 nucleotidesMPMX19_03890 and MPMX19_03891 are separated by 3 nucleotidesMPMX19_03891 and MPMX19_03892 are separated by 99 nucleotides MPMX19_03889: MPMX19_03889 - hypothetical protein, at 164,066 to 165,088 _03889 MPMX19_03890: MPMX19_03890 - Riboflavin transport system permease protein RibX, at 165,116 to 165,889 _03890 MPMX19_03891: MPMX19_03891 - Aliphatic sulfonates import ATP-binding protein SsuB, at 165,893 to 166,747 _03891 MPMX19_03892: MPMX19_03892 - HTH-type transcriptional repressor NanR, at 166,847 to 167,698 _03892 Position (kb) 165 166Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 164.160 kb on + strandat 164.160 kb on + strandat 164.160 kb on + strandat 164.160 kb on + strandat 164.161 kb on - strandat 164.259 kb on + strand, within MPMX19_03889at 164.259 kb on + strand, within MPMX19_03889at 164.259 kb on + strand, within MPMX19_03889at 164.259 kb on + strand, within MPMX19_03889at 164.259 kb on + strand, within MPMX19_03889at 164.260 kb on - strand, within MPMX19_03889at 164.310 kb on + strand, within MPMX19_03889at 164.310 kb on + strand, within MPMX19_03889at 164.311 kb on - strand, within MPMX19_03889at 164.448 kb on + strand, within MPMX19_03889at 164.448 kb on + strand, within MPMX19_03889at 164.449 kb on - strand, within MPMX19_03889at 164.449 kb on - strand, within MPMX19_03889at 164.449 kb on - strand, within MPMX19_03889at 164.449 kb on - strand, within MPMX19_03889at 164.449 kb on - strand, within MPMX19_03889at 164.449 kb on - strand, within MPMX19_03889at 164.487 kb on + strand, within MPMX19_03889at 164.487 kb on + strand, within MPMX19_03889at 164.487 kb on + strand, within MPMX19_03889at 164.487 kb on + strand, within MPMX19_03889at 164.487 kb on + strand, within MPMX19_03889at 164.488 kb on - strand, within MPMX19_03889at 164.488 kb on - strand, within MPMX19_03889at 164.784 kb on + strand, within MPMX19_03889at 164.784 kb on + strand, within MPMX19_03889at 164.784 kb on + strand, within MPMX19_03889at 164.784 kb on + strand, within MPMX19_03889at 164.784 kb on + strand, within MPMX19_03889at 164.784 kb on + strand, within MPMX19_03889at 164.785 kb on - strand, within MPMX19_03889at 164.785 kb on - strand, within MPMX19_03889at 164.785 kb on - strand, within MPMX19_03889at 164.785 kb on - strand, within MPMX19_03889at 164.785 kb on - strand, within MPMX19_03889at 164.862 kb on + strand, within MPMX19_03889at 164.862 kb on + strand, within MPMX19_03889at 164.863 kb on - strand, within MPMX19_03889at 164.863 kb on - strand, within MPMX19_03889at 164.863 kb on - strand, within MPMX19_03889at 164.863 kb on - strand, within MPMX19_03889at 164.946 kb on + strand, within MPMX19_03889at 164.946 kb on + strand, within MPMX19_03889at 164.946 kb on + strand, within MPMX19_03889at 164.947 kb on - strand, within MPMX19_03889at 164.947 kb on - strand, within MPMX19_03889at 164.947 kb on - strand, within MPMX19_03889at 165.189 kb on + strandat 165.189 kb on + strandat 165.189 kb on + strandat 165.189 kb on + strandat 165.189 kb on + strandat 165.189 kb on + strandat 165.189 kb on + strandat 165.189 kb on + strandat 165.189 kb on + strandat 165.189 kb on + strandat 165.190 kb on - strandat 165.190 kb on - strandat 165.190 kb on - strandat 165.190 kb on - strandat 165.190 kb on - strandat 165.190 kb on - strandat 165.190 kb on - strandat 165.612 kb on + strand, within MPMX19_03890at 165.612 kb on + strand, within MPMX19_03890at 165.612 kb on + strand, within MPMX19_03890at 165.613 kb on - strand, within MPMX19_03890at 165.613 kb on - strand, within MPMX19_03890at 165.613 kb on - strand, within MPMX19_03890at 165.613 kb on - strand, within MPMX19_03890at 165.624 kb on + strand, within MPMX19_03890at 165.624 kb on + strand, within MPMX19_03890at 165.624 kb on + strand, within MPMX19_03890at 165.625 kb on - strand, within MPMX19_03890at 165.625 kb on - strand, within MPMX19_03890at 165.625 kb on - strand, within MPMX19_03890at 165.882 kb on + strandat 165.882 kb on + strandat 165.882 kb on + strandat 165.882 kb on + strandat 165.883 kb on - strandat 165.883 kb on - strandat 165.883 kb on - strandat 165.883 kb on - strandat 165.883 kb on - strandat 165.883 kb on - strandat 165.883 kb on - strandat 165.883 kb on - strandat 165.883 kb on - strandat 166.368 kb on + strand, within MPMX19_03891at 166.368 kb on + strand, within MPMX19_03891at 166.368 kb on + strand, within MPMX19_03891at 166.369 kb on - strand, within MPMX19_03891at 166.369 kb on - strand, within MPMX19_03891at 166.529 kb on + strand, within MPMX19_03891at 166.529 kb on + strand, within MPMX19_03891at 166.529 kb on + strand, within MPMX19_03891at 166.529 kb on + strand, within MPMX19_03891at 166.529 kb on + strand, within MPMX19_03891at 166.530 kb on - strand, within MPMX19_03891at 166.754 kb on + strandat 166.754 kb on + strandat 166.754 kb on + strandat 166.754 kb on + strandat 166.754 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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164,160 + -1.0
164,160 + -1.2
164,160 + +0.8
164,160 + -0.2
164,161 - +0.7
164,259 + MPMX19_03889 0.19 +2.8
164,259 + MPMX19_03889 0.19 +1.6
164,259 + MPMX19_03889 0.19 +0.4
164,259 + MPMX19_03889 0.19 -1.6
164,259 + MPMX19_03889 0.19 -1.6
164,260 - MPMX19_03889 0.19 -0.2
164,310 + MPMX19_03889 0.24 +1.2
164,310 + MPMX19_03889 0.24 -0.2
164,311 - MPMX19_03889 0.24 -1.5
164,448 + MPMX19_03889 0.37 -0.2
164,448 + MPMX19_03889 0.37 -0.2
164,449 - MPMX19_03889 0.37 -2.0
164,449 - MPMX19_03889 0.37 -0.2
164,449 - MPMX19_03889 0.37 -1.5
164,449 - MPMX19_03889 0.37 +0.8
164,449 - MPMX19_03889 0.37 -0.2
164,449 - MPMX19_03889 0.37 -1.7
164,487 + MPMX19_03889 0.41 -0.7
164,487 + MPMX19_03889 0.41 -0.3
164,487 + MPMX19_03889 0.41 +0.8
164,487 + MPMX19_03889 0.41 -1.2
164,487 + MPMX19_03889 0.41 -1.7
164,488 - MPMX19_03889 0.41 +0.5
164,488 - MPMX19_03889 0.41 -0.5
164,784 + MPMX19_03889 0.70 -1.2
164,784 + MPMX19_03889 0.70 +0.8
164,784 + MPMX19_03889 0.70 -1.7
164,784 + MPMX19_03889 0.70 +0.2
164,784 + MPMX19_03889 0.70 -0.2
164,784 + MPMX19_03889 0.70 -0.4
164,785 - MPMX19_03889 0.70 -1.2
164,785 - MPMX19_03889 0.70 +0.1
164,785 - MPMX19_03889 0.70 +2.4
164,785 - MPMX19_03889 0.70 -0.7
164,785 - MPMX19_03889 0.70 -0.0
164,862 + MPMX19_03889 0.78 +1.6
164,862 + MPMX19_03889 0.78 -0.6
164,863 - MPMX19_03889 0.78 -0.6
164,863 - MPMX19_03889 0.78 +1.7
164,863 - MPMX19_03889 0.78 -1.6
164,863 - MPMX19_03889 0.78 +1.1
164,946 + MPMX19_03889 0.86 -0.4
164,946 + MPMX19_03889 0.86 -0.5
164,946 + MPMX19_03889 0.86 -0.7
164,947 - MPMX19_03889 0.86 +0.1
164,947 - MPMX19_03889 0.86 +0.8
164,947 - MPMX19_03889 0.86 -0.5
165,189 + -0.2
165,189 + +0.3
165,189 + -0.2
165,189 + +0.8
165,189 + -0.6
165,189 + +0.6
165,189 + -1.0
165,189 + +0.4
165,189 + +0.5
165,189 + -0.2
165,190 - +0.8
165,190 - +0.4
165,190 - +0.3
165,190 - -1.7
165,190 - +2.6
165,190 - +0.0
165,190 - +1.1
165,612 + MPMX19_03890 0.64 +0.8
165,612 + MPMX19_03890 0.64 -0.6
165,612 + MPMX19_03890 0.64 -0.2
165,613 - MPMX19_03890 0.64 +1.4
165,613 - MPMX19_03890 0.64 +0.8
165,613 - MPMX19_03890 0.64 -1.5
165,613 - MPMX19_03890 0.64 -0.7
165,624 + MPMX19_03890 0.66 -0.7
165,624 + MPMX19_03890 0.66 +0.1
165,624 + MPMX19_03890 0.66 +0.6
165,625 - MPMX19_03890 0.66 +0.0
165,625 - MPMX19_03890 0.66 -1.0
165,625 - MPMX19_03890 0.66 -0.3
165,882 + +0.8
165,882 + -0.5
165,882 + -0.2
165,882 + -0.2
165,883 - -0.5
165,883 - -0.7
165,883 - +0.4
165,883 - -0.4
165,883 - -2.9
165,883 - +0.4
165,883 - +1.3
165,883 - +0.4
165,883 - -0.8
166,368 + MPMX19_03891 0.56 -0.7
166,368 + MPMX19_03891 0.56 +0.4
166,368 + MPMX19_03891 0.56 -1.7
166,369 - MPMX19_03891 0.56 +0.4
166,369 - MPMX19_03891 0.56 -0.6
166,529 + MPMX19_03891 0.74 +2.0
166,529 + MPMX19_03891 0.74 -0.5
166,529 + MPMX19_03891 0.74 -2.2
166,529 + MPMX19_03891 0.74 +0.8
166,529 + MPMX19_03891 0.74 +0.8
166,530 - MPMX19_03891 0.75 +0.6
166,754 + +0.4
166,754 + -1.7
166,754 + +0.6
166,754 + +0.0
166,754 + -1.5

Or see this region's nucleotide sequence