Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02840 and MPMX19_02841 are separated by 11 nucleotides MPMX19_02841 and MPMX19_02842 are separated by 406 nucleotides MPMX19_02842 and MPMX19_02843 are separated by 182 nucleotides
MPMX19_02840: MPMX19_02840 - hypothetical protein, at 81,150 to 81,914
_02840
MPMX19_02841: MPMX19_02841 - hypothetical protein, at 81,926 to 82,333
_02841
MPMX19_02842: MPMX19_02842 - HTH-type transcriptional repressor RspR, at 82,740 to 83,450
_02842
MPMX19_02843: MPMX19_02843 - hypothetical protein, at 83,633 to 85,312
_02843
Position (kb) 82
83
84 Strain fitness (log2 ratio) -2
-1
0
1
2 at 81.751 kb on + strand, within MPMX19_02840 at 81.751 kb on + strand, within MPMX19_02840 at 81.752 kb on - strand, within MPMX19_02840 at 81.752 kb on - strand, within MPMX19_02840 at 81.752 kb on - strand, within MPMX19_02840 at 81.927 kb on + strand at 81.928 kb on - strand at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.123 kb on - strand, within MPMX19_02841 at 82.123 kb on - strand, within MPMX19_02841 at 82.123 kb on - strand, within MPMX19_02841 at 82.123 kb on - strand, within MPMX19_02841 at 82.123 kb on - strand, within MPMX19_02841 at 82.123 kb on - strand, within MPMX19_02841 at 82.123 kb on - strand, within MPMX19_02841 at 82.123 kb on - strand, within MPMX19_02841 at 82.123 kb on - strand, within MPMX19_02841 at 82.123 kb on - strand, within MPMX19_02841 at 82.123 kb on - strand, within MPMX19_02841 at 82.123 kb on - strand, within MPMX19_02841 at 82.142 kb on - strand, within MPMX19_02841 at 82.142 kb on - strand, within MPMX19_02841 at 82.142 kb on - strand, within MPMX19_02841 at 82.169 kb on + strand, within MPMX19_02841 at 82.169 kb on + strand, within MPMX19_02841 at 82.191 kb on + strand, within MPMX19_02841 at 82.191 kb on + strand, within MPMX19_02841 at 82.191 kb on + strand, within MPMX19_02841 at 82.192 kb on - strand, within MPMX19_02841 at 82.270 kb on + strand, within MPMX19_02841 at 82.296 kb on + strand at 82.296 kb on + strand at 82.296 kb on + strand at 82.297 kb on - strand at 82.557 kb on + strand at 82.621 kb on + strand at 82.621 kb on + strand at 82.621 kb on + strand at 82.621 kb on + strand at 82.622 kb on - strand at 82.713 kb on + strand at 82.743 kb on + strand at 82.744 kb on - strand at 83.082 kb on + strand, within MPMX19_02842 at 83.082 kb on + strand, within MPMX19_02842 at 83.082 kb on + strand, within MPMX19_02842 at 83.082 kb on + strand, within MPMX19_02842 at 83.083 kb on - strand, within MPMX19_02842 at 83.083 kb on - strand, within MPMX19_02842 at 83.083 kb on - strand, within MPMX19_02842 at 83.083 kb on - strand, within MPMX19_02842 at 83.169 kb on + strand, within MPMX19_02842 at 83.170 kb on - strand, within MPMX19_02842 at 83.170 kb on - strand, within MPMX19_02842 at 83.170 kb on - strand, within MPMX19_02842 at 83.170 kb on - strand, within MPMX19_02842 at 83.170 kb on - strand, within MPMX19_02842 at 83.205 kb on + strand, within MPMX19_02842 at 83.205 kb on + strand, within MPMX19_02842 at 83.205 kb on + strand, within MPMX19_02842 at 83.205 kb on + strand, within MPMX19_02842 at 83.205 kb on + strand, within MPMX19_02842 at 83.206 kb on - strand, within MPMX19_02842 at 83.206 kb on - strand, within MPMX19_02842 at 83.206 kb on - strand, within MPMX19_02842 at 83.213 kb on + strand, within MPMX19_02842 at 83.393 kb on + strand at 83.393 kb on + strand at 83.394 kb on - strand at 83.424 kb on + strand at 83.425 kb on - strand at 83.425 kb on - strand at 83.506 kb on + strand at 83.507 kb on - strand at 83.507 kb on - strand at 83.587 kb on + strand at 83.587 kb on + strand at 83.588 kb on - strand at 83.681 kb on - strand at 83.858 kb on + strand, within MPMX19_02843 at 84.107 kb on + strand, within MPMX19_02843 at 84.107 kb on + strand, within MPMX19_02843 at 84.107 kb on + strand, within MPMX19_02843 at 84.107 kb on + strand, within MPMX19_02843 at 84.107 kb on + strand, within MPMX19_02843 at 84.107 kb on + strand, within MPMX19_02843 at 84.107 kb on + strand, within MPMX19_02843 at 84.108 kb on - strand, within MPMX19_02843 at 84.108 kb on - strand, within MPMX19_02843 at 84.108 kb on - strand, within MPMX19_02843 at 84.108 kb on - strand, within MPMX19_02843 at 84.108 kb on - strand, within MPMX19_02843 at 84.108 kb on - strand, within MPMX19_02843 at 84.108 kb on - strand, within MPMX19_02843 at 84.108 kb on - strand, within MPMX19_02843 at 84.108 kb on - strand, within MPMX19_02843 at 84.108 kb on - strand, within MPMX19_02843 at 84.108 kb on - strand, within MPMX19_02843 at 84.209 kb on + strand, within MPMX19_02843 at 84.210 kb on - strand, within MPMX19_02843 at 84.242 kb on + strand, within MPMX19_02843 at 84.242 kb on + strand, within MPMX19_02843 at 84.242 kb on + strand, within MPMX19_02843 at 84.243 kb on - strand, within MPMX19_02843 at 84.243 kb on - strand, within MPMX19_02843 at 84.243 kb on - strand, within MPMX19_02843 at 84.243 kb on - strand, within MPMX19_02843 at 84.335 kb on + strand, within MPMX19_02843 at 84.335 kb on + strand, within MPMX19_02843 at 84.335 kb on + strand, within MPMX19_02843 at 84.336 kb on - strand, within MPMX19_02843
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 81,751 + MPMX19_02840 0.79 -2.2 81,751 + MPMX19_02840 0.79 -0.7 81,752 - MPMX19_02840 0.79 +2.1 81,752 - MPMX19_02840 0.79 -1.4 81,752 - MPMX19_02840 0.79 +0.2 81,927 + -1.2 81,928 - -0.8 82,122 + MPMX19_02841 0.48 -0.3 82,122 + MPMX19_02841 0.48 -1.0 82,122 + MPMX19_02841 0.48 +0.1 82,122 + MPMX19_02841 0.48 +0.0 82,122 + MPMX19_02841 0.48 -0.2 82,122 + MPMX19_02841 0.48 -1.0 82,122 + MPMX19_02841 0.48 +0.8 82,122 + MPMX19_02841 0.48 -2.0 82,122 + MPMX19_02841 0.48 +0.1 82,122 + MPMX19_02841 0.48 -1.0 82,122 + MPMX19_02841 0.48 +0.2 82,122 + MPMX19_02841 0.48 -1.6 82,122 + MPMX19_02841 0.48 -0.8 82,122 + MPMX19_02841 0.48 -1.6 82,122 + MPMX19_02841 0.48 +0.7 82,122 + MPMX19_02841 0.48 +0.6 82,123 - MPMX19_02841 0.48 -0.7 82,123 - MPMX19_02841 0.48 -0.5 82,123 - MPMX19_02841 0.48 +0.1 82,123 - MPMX19_02841 0.48 -1.5 82,123 - MPMX19_02841 0.48 -2.0 82,123 - MPMX19_02841 0.48 -0.2 82,123 - MPMX19_02841 0.48 -1.2 82,123 - MPMX19_02841 0.48 -0.6 82,123 - MPMX19_02841 0.48 -1.0 82,123 - MPMX19_02841 0.48 -0.4 82,123 - MPMX19_02841 0.48 +0.0 82,123 - MPMX19_02841 0.48 -0.6 82,142 - MPMX19_02841 0.53 +1.4 82,142 - MPMX19_02841 0.53 -1.2 82,142 - MPMX19_02841 0.53 +1.2 82,169 + MPMX19_02841 0.60 -0.2 82,169 + MPMX19_02841 0.60 -1.2 82,191 + MPMX19_02841 0.65 -1.2 82,191 + MPMX19_02841 0.65 +1.8 82,191 + MPMX19_02841 0.65 -0.2 82,192 - MPMX19_02841 0.65 +1.8 82,270 + MPMX19_02841 0.84 -0.0 82,296 + +0.1 82,296 + -0.8 82,296 + +1.4 82,297 - -1.2 82,557 + -0.2 82,621 + -0.9 82,621 + -0.7 82,621 + +0.8 82,621 + +0.4 82,622 - -1.2 82,713 + -1.5 82,743 + -0.4 82,744 - +0.3 83,082 + MPMX19_02842 0.48 -2.0 83,082 + MPMX19_02842 0.48 -0.9 83,082 + MPMX19_02842 0.48 -0.2 83,082 + MPMX19_02842 0.48 -1.3 83,083 - MPMX19_02842 0.48 -0.6 83,083 - MPMX19_02842 0.48 +0.8 83,083 - MPMX19_02842 0.48 +1.4 83,083 - MPMX19_02842 0.48 +0.8 83,169 + MPMX19_02842 0.60 -0.8 83,170 - MPMX19_02842 0.60 -0.2 83,170 - MPMX19_02842 0.60 -0.5 83,170 - MPMX19_02842 0.60 -1.9 83,170 - MPMX19_02842 0.60 -0.5 83,170 - MPMX19_02842 0.60 -2.3 83,205 + MPMX19_02842 0.65 -0.5 83,205 + MPMX19_02842 0.65 -1.8 83,205 + MPMX19_02842 0.65 -1.2 83,205 + MPMX19_02842 0.65 -0.8 83,205 + MPMX19_02842 0.65 -0.2 83,206 - MPMX19_02842 0.66 +0.7 83,206 - MPMX19_02842 0.66 -0.5 83,206 - MPMX19_02842 0.66 -1.0 83,213 + MPMX19_02842 0.67 -1.5 83,393 + +0.1 83,393 + +0.1 83,394 - +0.4 83,424 + -0.2 83,425 - -0.8 83,425 - +1.4 83,506 + +1.2 83,507 - -0.4 83,507 - -0.9 83,587 + -0.8 83,587 + -1.2 83,588 - -1.8 83,681 - -0.2 83,858 + MPMX19_02843 0.13 +0.2 84,107 + MPMX19_02843 0.28 +0.8 84,107 + MPMX19_02843 0.28 -1.3 84,107 + MPMX19_02843 0.28 +0.0 84,107 + MPMX19_02843 0.28 -0.2 84,107 + MPMX19_02843 0.28 -2.0 84,107 + MPMX19_02843 0.28 -1.2 84,107 + MPMX19_02843 0.28 +0.6 84,108 - MPMX19_02843 0.28 -0.0 84,108 - MPMX19_02843 0.28 -0.7 84,108 - MPMX19_02843 0.28 +1.4 84,108 - MPMX19_02843 0.28 -0.5 84,108 - MPMX19_02843 0.28 -0.2 84,108 - MPMX19_02843 0.28 +1.0 84,108 - MPMX19_02843 0.28 -0.8 84,108 - MPMX19_02843 0.28 -0.6 84,108 - MPMX19_02843 0.28 +0.8 84,108 - MPMX19_02843 0.28 -0.5 84,108 - MPMX19_02843 0.28 +0.4 84,209 + MPMX19_02843 0.34 -1.2 84,210 - MPMX19_02843 0.34 +0.4 84,242 + MPMX19_02843 0.36 -0.6 84,242 + MPMX19_02843 0.36 +0.1 84,242 + MPMX19_02843 0.36 +1.6 84,243 - MPMX19_02843 0.36 +0.4 84,243 - MPMX19_02843 0.36 +0.6 84,243 - MPMX19_02843 0.36 -0.6 84,243 - MPMX19_02843 0.36 -0.3 84,335 + MPMX19_02843 0.42 +0.2 84,335 + MPMX19_02843 0.42 +1.8 84,335 + MPMX19_02843 0.42 -0.3 84,336 - MPMX19_02843 0.42 -1.2
Or see this region's nucleotide sequence