Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02348

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02346 and MPMX19_02347 are separated by 4 nucleotidesMPMX19_02347 and MPMX19_02348 are separated by 13 nucleotidesMPMX19_02348 and MPMX19_02349 overlap by 8 nucleotidesMPMX19_02349 and MPMX19_02350 are separated by 8 nucleotidesMPMX19_02350 and MPMX19_02351 overlap by 4 nucleotidesMPMX19_02351 and MPMX19_02352 are separated by 2 nucleotides MPMX19_02346: MPMX19_02346 - hypothetical protein, at 2,473,181 to 2,475,517 _02346 MPMX19_02347: MPMX19_02347 - hypothetical protein, at 2,475,522 to 2,475,692 _02347 MPMX19_02348: MPMX19_02348 - hypothetical protein, at 2,475,706 to 2,475,888 _02348 MPMX19_02349: MPMX19_02349 - hypothetical protein, at 2,475,881 to 2,476,120 _02349 MPMX19_02350: MPMX19_02350 - hypothetical protein, at 2,476,129 to 2,476,404 _02350 MPMX19_02351: MPMX19_02351 - hypothetical protein, at 2,476,401 to 2,476,868 _02351 MPMX19_02352: MPMX19_02352 - hypothetical protein, at 2,476,871 to 2,477,155 _02352 Position (kb) 2475 2476Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2475.036 kb on + strand, within MPMX19_02346at 2475.036 kb on + strand, within MPMX19_02346at 2475.036 kb on + strand, within MPMX19_02346at 2475.036 kb on + strand, within MPMX19_02346at 2475.036 kb on + strand, within MPMX19_02346at 2475.036 kb on + strand, within MPMX19_02346at 2475.036 kb on + strand, within MPMX19_02346at 2475.036 kb on + strand, within MPMX19_02346at 2475.036 kb on + strand, within MPMX19_02346at 2475.036 kb on + strand, within MPMX19_02346at 2475.036 kb on + strand, within MPMX19_02346at 2475.036 kb on + strand, within MPMX19_02346at 2475.036 kb on + strand, within MPMX19_02346at 2475.036 kb on + strand, within MPMX19_02346at 2475.036 kb on + strand, within MPMX19_02346at 2475.036 kb on + strand, within MPMX19_02346at 2475.036 kb on + strand, within MPMX19_02346at 2475.036 kb on + strand, within MPMX19_02346at 2475.036 kb on + strand, within MPMX19_02346at 2475.036 kb on + strand, within MPMX19_02346at 2475.037 kb on - strand, within MPMX19_02346at 2475.037 kb on - strand, within MPMX19_02346at 2475.037 kb on - strand, within MPMX19_02346at 2475.037 kb on - strand, within MPMX19_02346at 2475.037 kb on - strand, within MPMX19_02346at 2475.037 kb on - strand, within MPMX19_02346at 2475.037 kb on - strand, within MPMX19_02346at 2475.037 kb on - strand, within MPMX19_02346at 2475.037 kb on - strand, within MPMX19_02346at 2475.037 kb on - strand, within MPMX19_02346at 2475.037 kb on - strand, within MPMX19_02346at 2475.037 kb on - strand, within MPMX19_02346at 2475.037 kb on - strand, within MPMX19_02346at 2475.037 kb on - strand, within MPMX19_02346at 2475.037 kb on - strand, within MPMX19_02346at 2475.037 kb on - strand, within MPMX19_02346at 2475.037 kb on - strand, within MPMX19_02346at 2475.037 kb on - strand, within MPMX19_02346at 2475.037 kb on - strand, within MPMX19_02346at 2475.037 kb on - strand, within MPMX19_02346at 2475.040 kb on + strand, within MPMX19_02346at 2475.041 kb on - strand, within MPMX19_02346at 2475.459 kb on + strandat 2475.459 kb on + strandat 2475.459 kb on + strandat 2475.459 kb on + strandat 2475.459 kb on + strandat 2475.459 kb on + strandat 2475.459 kb on + strandat 2475.459 kb on + strandat 2475.460 kb on - strandat 2475.460 kb on - strandat 2475.460 kb on - strandat 2475.460 kb on - strandat 2475.460 kb on - strandat 2475.460 kb on - strandat 2475.460 kb on - strandat 2475.460 kb on - strandat 2475.460 kb on - strandat 2475.460 kb on - strandat 2475.460 kb on - strandat 2475.523 kb on + strandat 2475.523 kb on + strandat 2475.523 kb on + strandat 2475.523 kb on + strandat 2475.523 kb on + strandat 2475.523 kb on + strandat 2475.523 kb on + strandat 2475.523 kb on + strandat 2475.524 kb on - strandat 2475.524 kb on - strandat 2475.524 kb on - strandat 2475.524 kb on - strandat 2475.524 kb on - strandat 2475.524 kb on - strandat 2475.524 kb on - strandat 2475.524 kb on - strandat 2475.524 kb on - strandat 2475.524 kb on - strandat 2475.524 kb on - strandat 2475.524 kb on - strandat 2475.524 kb on - strandat 2475.524 kb on - strandat 2475.524 kb on - strandat 2475.524 kb on - strandat 2475.683 kb on + strandat 2475.683 kb on + strandat 2475.683 kb on + strandat 2475.683 kb on + strandat 2475.683 kb on + strandat 2475.683 kb on + strandat 2475.683 kb on + strandat 2475.683 kb on + strandat 2475.683 kb on + strandat 2475.683 kb on + strandat 2475.683 kb on + strandat 2475.683 kb on + strandat 2475.683 kb on + strandat 2475.683 kb on + strandat 2475.683 kb on + strandat 2475.683 kb on + strandat 2475.683 kb on + strandat 2475.683 kb on + strandat 2475.683 kb on + strandat 2475.683 kb on + strandat 2475.683 kb on + strandat 2475.683 kb on + strandat 2475.683 kb on + strandat 2475.683 kb on + strandat 2475.684 kb on - strandat 2475.684 kb on - strandat 2475.684 kb on - strandat 2475.684 kb on - strandat 2475.684 kb on - strandat 2475.684 kb on - strandat 2475.684 kb on - strandat 2475.684 kb on - strandat 2475.684 kb on - strandat 2475.684 kb on - strandat 2475.684 kb on - strandat 2475.684 kb on - strandat 2475.684 kb on - strandat 2475.684 kb on - strandat 2475.684 kb on - strandat 2475.684 kb on - strandat 2475.684 kb on - strandat 2475.684 kb on - strandat 2475.707 kb on + strandat 2475.803 kb on + strand, within MPMX19_02348at 2475.803 kb on + strand, within MPMX19_02348at 2475.804 kb on - strand, within MPMX19_02348at 2475.804 kb on - strand, within MPMX19_02348at 2475.804 kb on - strand, within MPMX19_02348at 2476.099 kb on + strandat 2476.099 kb on + strandat 2476.099 kb on + strandat 2476.100 kb on - strandat 2476.100 kb on - strandat 2476.145 kb on + strandat 2476.145 kb on + strandat 2476.145 kb on + strandat 2476.145 kb on + strandat 2476.145 kb on + strandat 2476.146 kb on - strandat 2476.146 kb on - strandat 2476.146 kb on - strandat 2476.146 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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2,475,036 + MPMX19_02346 0.79 -0.7
2,475,036 + MPMX19_02346 0.79 -1.8
2,475,036 + MPMX19_02346 0.79 +0.2
2,475,036 + MPMX19_02346 0.79 -1.1
2,475,036 + MPMX19_02346 0.79 -1.8
2,475,036 + MPMX19_02346 0.79 -0.5
2,475,036 + MPMX19_02346 0.79 +0.7
2,475,036 + MPMX19_02346 0.79 +1.9
2,475,036 + MPMX19_02346 0.79 -0.5
2,475,036 + MPMX19_02346 0.79 -2.3
2,475,036 + MPMX19_02346 0.79 -0.3
2,475,036 + MPMX19_02346 0.79 -0.1
2,475,036 + MPMX19_02346 0.79 -0.1
2,475,036 + MPMX19_02346 0.79 -1.2
2,475,036 + MPMX19_02346 0.79 +0.9
2,475,036 + MPMX19_02346 0.79 -0.0
2,475,036 + MPMX19_02346 0.79 -1.1
2,475,036 + MPMX19_02346 0.79 -0.5
2,475,036 + MPMX19_02346 0.79 -1.9
2,475,036 + MPMX19_02346 0.79 -0.9
2,475,037 - MPMX19_02346 0.79 +0.2
2,475,037 - MPMX19_02346 0.79 -0.3
2,475,037 - MPMX19_02346 0.79 +0.9
2,475,037 - MPMX19_02346 0.79 +0.3
2,475,037 - MPMX19_02346 0.79 -2.5
2,475,037 - MPMX19_02346 0.79 -1.1
2,475,037 - MPMX19_02346 0.79 -0.7
2,475,037 - MPMX19_02346 0.79 -2.5
2,475,037 - MPMX19_02346 0.79 +0.3
2,475,037 - MPMX19_02346 0.79 -1.7
2,475,037 - MPMX19_02346 0.79 +0.9
2,475,037 - MPMX19_02346 0.79 -0.1
2,475,037 - MPMX19_02346 0.79 -0.5
2,475,037 - MPMX19_02346 0.79 +1.1
2,475,037 - MPMX19_02346 0.79 -1.1
2,475,037 - MPMX19_02346 0.79 -0.7
2,475,037 - MPMX19_02346 0.79 +0.9
2,475,037 - MPMX19_02346 0.79 -0.6
2,475,037 - MPMX19_02346 0.79 -0.7
2,475,037 - MPMX19_02346 0.79 +0.0
2,475,040 + MPMX19_02346 0.80 -2.3
2,475,041 - MPMX19_02346 0.80 +0.3
2,475,459 + -1.3
2,475,459 + -0.6
2,475,459 + -0.4
2,475,459 + +0.1
2,475,459 + -0.1
2,475,459 + -2.9
2,475,459 + -1.1
2,475,459 + +0.9
2,475,460 - -0.5
2,475,460 - -0.7
2,475,460 - -0.7
2,475,460 - -0.7
2,475,460 - +1.3
2,475,460 - -0.5
2,475,460 - +0.3
2,475,460 - +0.4
2,475,460 - +2.2
2,475,460 - -0.5
2,475,460 - +1.4
2,475,523 + +2.4
2,475,523 + -1.5
2,475,523 + -0.4
2,475,523 + +0.4
2,475,523 + -1.5
2,475,523 + -1.4
2,475,523 + -0.6
2,475,523 + -1.1
2,475,524 - -0.5
2,475,524 - -1.9
2,475,524 - -0.1
2,475,524 - +1.2
2,475,524 - +0.4
2,475,524 - +0.1
2,475,524 - +0.9
2,475,524 - +1.6
2,475,524 - +0.2
2,475,524 - +0.0
2,475,524 - -0.1
2,475,524 - +1.9
2,475,524 - -0.1
2,475,524 - +0.7
2,475,524 - +0.2
2,475,524 - +0.4
2,475,683 + +0.1
2,475,683 + +0.1
2,475,683 + +0.9
2,475,683 + -0.1
2,475,683 + -0.4
2,475,683 + -0.6
2,475,683 + -0.4
2,475,683 + -0.4
2,475,683 + +0.1
2,475,683 + -0.5
2,475,683 + -0.6
2,475,683 + -1.1
2,475,683 + -0.1
2,475,683 + -1.0
2,475,683 + -0.5
2,475,683 + -0.5
2,475,683 + -0.1
2,475,683 + -0.5
2,475,683 + -0.9
2,475,683 + -0.6
2,475,683 + +0.2
2,475,683 + +0.4
2,475,683 + +0.9
2,475,683 + +1.1
2,475,684 - -0.1
2,475,684 - -0.1
2,475,684 - -1.5
2,475,684 - +0.7
2,475,684 - -1.1
2,475,684 - +0.9
2,475,684 - +0.4
2,475,684 - -0.7
2,475,684 - -0.5
2,475,684 - -0.7
2,475,684 - -0.7
2,475,684 - -1.5
2,475,684 - -0.9
2,475,684 - +0.1
2,475,684 - -1.5
2,475,684 - -0.9
2,475,684 - +0.4
2,475,684 - +0.4
2,475,707 + +0.9
2,475,803 + MPMX19_02348 0.53 -0.8
2,475,803 + MPMX19_02348 0.53 -0.7
2,475,804 - MPMX19_02348 0.54 -1.0
2,475,804 - MPMX19_02348 0.54 +0.4
2,475,804 - MPMX19_02348 0.54 -1.9
2,476,099 + +0.9
2,476,099 + -1.1
2,476,099 + +0.9
2,476,100 - -0.5
2,476,100 - -0.7
2,476,145 + -0.6
2,476,145 + +0.1
2,476,145 + -1.8
2,476,145 + -1.0
2,476,145 + +0.9
2,476,146 - +0.3
2,476,146 - +0.9
2,476,146 - -1.1
2,476,146 - -0.1

Or see this region's nucleotide sequence