Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02128

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02127 and MPMX19_02128 overlap by 4 nucleotidesMPMX19_02128 and MPMX19_02129 are separated by 131 nucleotides MPMX19_02127: MPMX19_02127 - hypothetical protein, at 2,225,108 to 2,226,874 _02127 MPMX19_02128: MPMX19_02128 - Lipopolysaccharide assembly protein B, at 2,226,871 to 2,228,220 _02128 MPMX19_02129: MPMX19_02129 - hypothetical protein, at 2,228,352 to 2,230,304 _02129 Position (kb) 2226 2227 2228 2229Strain fitness (log2 ratio) -2 -1 0 1 2at 2226.470 kb on + strand, within MPMX19_02127at 2226.470 kb on + strand, within MPMX19_02127at 2226.470 kb on + strand, within MPMX19_02127at 2226.470 kb on + strand, within MPMX19_02127at 2226.471 kb on - strand, within MPMX19_02127at 2226.974 kb on - strandat 2227.288 kb on + strand, within MPMX19_02128at 2227.289 kb on - strand, within MPMX19_02128at 2227.447 kb on + strand, within MPMX19_02128at 2227.447 kb on + strand, within MPMX19_02128at 2227.447 kb on + strand, within MPMX19_02128at 2227.447 kb on + strand, within MPMX19_02128at 2227.447 kb on + strand, within MPMX19_02128at 2227.447 kb on + strand, within MPMX19_02128at 2227.447 kb on + strand, within MPMX19_02128at 2227.447 kb on + strand, within MPMX19_02128at 2227.447 kb on + strand, within MPMX19_02128at 2227.447 kb on + strand, within MPMX19_02128at 2227.447 kb on + strand, within MPMX19_02128at 2227.447 kb on + strand, within MPMX19_02128at 2227.447 kb on + strand, within MPMX19_02128at 2227.447 kb on + strand, within MPMX19_02128at 2227.447 kb on + strand, within MPMX19_02128at 2227.448 kb on - strand, within MPMX19_02128at 2227.448 kb on - strand, within MPMX19_02128at 2227.448 kb on - strand, within MPMX19_02128at 2227.771 kb on + strand, within MPMX19_02128at 2227.772 kb on - strand, within MPMX19_02128at 2227.772 kb on - strand, within MPMX19_02128at 2227.792 kb on + strand, within MPMX19_02128at 2227.792 kb on + strand, within MPMX19_02128at 2227.792 kb on + strand, within MPMX19_02128at 2227.792 kb on + strand, within MPMX19_02128at 2227.792 kb on + strand, within MPMX19_02128at 2227.792 kb on + strand, within MPMX19_02128at 2227.792 kb on + strand, within MPMX19_02128at 2227.793 kb on - strand, within MPMX19_02128at 2227.793 kb on - strand, within MPMX19_02128at 2227.793 kb on - strand, within MPMX19_02128at 2227.793 kb on - strand, within MPMX19_02128at 2227.793 kb on - strand, within MPMX19_02128at 2227.793 kb on - strand, within MPMX19_02128at 2227.793 kb on - strand, within MPMX19_02128at 2227.793 kb on - strand, within MPMX19_02128at 2227.793 kb on - strand, within MPMX19_02128at 2227.960 kb on + strand, within MPMX19_02128at 2227.960 kb on + strand, within MPMX19_02128at 2227.961 kb on - strand, within MPMX19_02128at 2228.218 kb on + strandat 2228.218 kb on + strandat 2228.218 kb on + strandat 2228.218 kb on + strandat 2228.219 kb on - strandat 2228.219 kb on - strandat 2228.533 kb on + strandat 2228.533 kb on + strandat 2228.534 kb on - strandat 2228.803 kb on + strand, within MPMX19_02129at 2228.803 kb on + strand, within MPMX19_02129at 2228.803 kb on + strand, within MPMX19_02129at 2228.803 kb on + strand, within MPMX19_02129at 2228.803 kb on + strand, within MPMX19_02129at 2228.803 kb on + strand, within MPMX19_02129at 2228.803 kb on + strand, within MPMX19_02129at 2228.803 kb on + strand, within MPMX19_02129at 2228.803 kb on + strand, within MPMX19_02129at 2228.803 kb on + strand, within MPMX19_02129at 2228.803 kb on + strand, within MPMX19_02129at 2228.803 kb on + strand, within MPMX19_02129at 2228.803 kb on + strand, within MPMX19_02129at 2228.804 kb on - strand, within MPMX19_02129at 2228.804 kb on - strand, within MPMX19_02129at 2228.804 kb on - strand, within MPMX19_02129at 2228.804 kb on - strand, within MPMX19_02129at 2228.804 kb on - strand, within MPMX19_02129at 2228.804 kb on - strand, within MPMX19_02129at 2228.804 kb on - strand, within MPMX19_02129at 2228.804 kb on - strand, within MPMX19_02129at 2228.804 kb on - strand, within MPMX19_02129at 2228.804 kb on - strand, within MPMX19_02129at 2228.804 kb on - strand, within MPMX19_02129at 2228.821 kb on + strand, within MPMX19_02129at 2228.822 kb on - strand, within MPMX19_02129at 2228.822 kb on - strand, within MPMX19_02129at 2228.822 kb on - strand, within MPMX19_02129at 2228.822 kb on - strand, within MPMX19_02129at 2229.041 kb on - strand, within MPMX19_02129

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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2,226,470 + MPMX19_02127 0.77 +2.0
2,226,470 + MPMX19_02127 0.77 +0.8
2,226,470 + MPMX19_02127 0.77 +0.3
2,226,470 + MPMX19_02127 0.77 +0.8
2,226,471 - MPMX19_02127 0.77 -0.2
2,226,974 - -0.8
2,227,288 + MPMX19_02128 0.31 -1.0
2,227,289 - MPMX19_02128 0.31 -1.4
2,227,447 + MPMX19_02128 0.43 +0.3
2,227,447 + MPMX19_02128 0.43 -0.2
2,227,447 + MPMX19_02128 0.43 -0.2
2,227,447 + MPMX19_02128 0.43 -0.2
2,227,447 + MPMX19_02128 0.43 -0.0
2,227,447 + MPMX19_02128 0.43 +0.4
2,227,447 + MPMX19_02128 0.43 +0.8
2,227,447 + MPMX19_02128 0.43 -1.2
2,227,447 + MPMX19_02128 0.43 -0.2
2,227,447 + MPMX19_02128 0.43 +0.8
2,227,447 + MPMX19_02128 0.43 -0.2
2,227,447 + MPMX19_02128 0.43 -0.8
2,227,447 + MPMX19_02128 0.43 -0.2
2,227,447 + MPMX19_02128 0.43 -0.2
2,227,447 + MPMX19_02128 0.43 -0.8
2,227,448 - MPMX19_02128 0.43 -0.2
2,227,448 - MPMX19_02128 0.43 -0.5
2,227,448 - MPMX19_02128 0.43 +0.5
2,227,771 + MPMX19_02128 0.67 +0.4
2,227,772 - MPMX19_02128 0.67 +0.4
2,227,772 - MPMX19_02128 0.67 -1.2
2,227,792 + MPMX19_02128 0.68 +0.4
2,227,792 + MPMX19_02128 0.68 -0.6
2,227,792 + MPMX19_02128 0.68 -0.8
2,227,792 + MPMX19_02128 0.68 +0.8
2,227,792 + MPMX19_02128 0.68 -1.2
2,227,792 + MPMX19_02128 0.68 -1.2
2,227,792 + MPMX19_02128 0.68 -1.2
2,227,793 - MPMX19_02128 0.68 -1.2
2,227,793 - MPMX19_02128 0.68 -1.2
2,227,793 - MPMX19_02128 0.68 -1.4
2,227,793 - MPMX19_02128 0.68 -0.8
2,227,793 - MPMX19_02128 0.68 -1.2
2,227,793 - MPMX19_02128 0.68 +0.4
2,227,793 - MPMX19_02128 0.68 +0.8
2,227,793 - MPMX19_02128 0.68 -0.7
2,227,793 - MPMX19_02128 0.68 -1.5
2,227,960 + MPMX19_02128 0.81 -0.7
2,227,960 + MPMX19_02128 0.81 -1.2
2,227,961 - MPMX19_02128 0.81 +1.8
2,228,218 + +0.8
2,228,218 + +0.6
2,228,218 + -0.6
2,228,218 + +1.2
2,228,219 - -0.8
2,228,219 - +0.4
2,228,533 + +0.5
2,228,533 + +0.1
2,228,534 - -1.5
2,228,803 + MPMX19_02129 0.23 -0.2
2,228,803 + MPMX19_02129 0.23 -1.2
2,228,803 + MPMX19_02129 0.23 +0.9
2,228,803 + MPMX19_02129 0.23 +2.1
2,228,803 + MPMX19_02129 0.23 -1.2
2,228,803 + MPMX19_02129 0.23 +0.6
2,228,803 + MPMX19_02129 0.23 -1.5
2,228,803 + MPMX19_02129 0.23 +1.6
2,228,803 + MPMX19_02129 0.23 -0.4
2,228,803 + MPMX19_02129 0.23 +0.4
2,228,803 + MPMX19_02129 0.23 -1.5
2,228,803 + MPMX19_02129 0.23 +1.8
2,228,803 + MPMX19_02129 0.23 +1.4
2,228,804 - MPMX19_02129 0.23 +0.8
2,228,804 - MPMX19_02129 0.23 -1.0
2,228,804 - MPMX19_02129 0.23 -0.5
2,228,804 - MPMX19_02129 0.23 -1.0
2,228,804 - MPMX19_02129 0.23 +1.2
2,228,804 - MPMX19_02129 0.23 +0.5
2,228,804 - MPMX19_02129 0.23 -0.8
2,228,804 - MPMX19_02129 0.23 +0.8
2,228,804 - MPMX19_02129 0.23 +0.8
2,228,804 - MPMX19_02129 0.23 -0.2
2,228,804 - MPMX19_02129 0.23 -0.2
2,228,821 + MPMX19_02129 0.24 +0.8
2,228,822 - MPMX19_02129 0.24 -0.5
2,228,822 - MPMX19_02129 0.24 -1.4
2,228,822 - MPMX19_02129 0.24 +0.6
2,228,822 - MPMX19_02129 0.24 -2.0
2,229,041 - MPMX19_02129 0.35 -0.4

Or see this region's nucleotide sequence