Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06853 and MPMX19_06854 are separated by 49 nucleotides MPMX19_06854 and MPMX19_06855 are separated by 306 nucleotides
MPMX19_06853: MPMX19_06853 - Glyoxylate/hydroxypyruvate reductase A, at 121,336 to 122,259
_06853
MPMX19_06854: MPMX19_06854 - Acetylornithine deacetylase, at 122,309 to 123,433
_06854
MPMX19_06855: MPMX19_06855 - hypothetical protein, at 123,740 to 124,699
_06855
Position (kb) 122
123
124 Strain fitness (log2 ratio) -2
-1
0
1
2 at 121.440 kb on + strand, within MPMX19_06853 at 121.440 kb on + strand, within MPMX19_06853 at 121.440 kb on + strand, within MPMX19_06853 at 121.440 kb on + strand, within MPMX19_06853 at 121.440 kb on + strand, within MPMX19_06853 at 121.441 kb on - strand, within MPMX19_06853 at 121.441 kb on - strand, within MPMX19_06853 at 121.970 kb on + strand, within MPMX19_06853 at 121.970 kb on + strand, within MPMX19_06853 at 121.971 kb on - strand, within MPMX19_06853 at 121.971 kb on - strand, within MPMX19_06853 at 121.971 kb on - strand, within MPMX19_06853 at 122.135 kb on + strand, within MPMX19_06853 at 122.472 kb on + strand, within MPMX19_06854 at 122.472 kb on + strand, within MPMX19_06854 at 122.472 kb on + strand, within MPMX19_06854 at 122.472 kb on + strand, within MPMX19_06854 at 122.473 kb on - strand, within MPMX19_06854 at 122.473 kb on - strand, within MPMX19_06854 at 122.559 kb on + strand, within MPMX19_06854 at 122.559 kb on + strand, within MPMX19_06854 at 122.751 kb on + strand, within MPMX19_06854 at 122.751 kb on + strand, within MPMX19_06854 at 122.752 kb on - strand, within MPMX19_06854 at 123.042 kb on + strand, within MPMX19_06854 at 123.043 kb on - strand, within MPMX19_06854 at 123.243 kb on + strand, within MPMX19_06854 at 123.243 kb on + strand, within MPMX19_06854 at 123.244 kb on - strand, within MPMX19_06854 at 123.244 kb on - strand, within MPMX19_06854 at 123.244 kb on - strand, within MPMX19_06854 at 123.244 kb on - strand, within MPMX19_06854 at 123.540 kb on + strand at 123.540 kb on + strand at 123.540 kb on + strand at 123.540 kb on + strand at 123.541 kb on - strand at 123.541 kb on - strand at 123.541 kb on - strand at 123.649 kb on + strand at 124.148 kb on + strand, within MPMX19_06855
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 121,440 + MPMX19_06853 0.11 -2.0 121,440 + MPMX19_06853 0.11 -0.0 121,440 + MPMX19_06853 0.11 -1.4 121,440 + MPMX19_06853 0.11 -0.1 121,440 + MPMX19_06853 0.11 +1.3 121,441 - MPMX19_06853 0.11 +0.1 121,441 - MPMX19_06853 0.11 +0.0 121,970 + MPMX19_06853 0.69 -0.4 121,970 + MPMX19_06853 0.69 -0.4 121,971 - MPMX19_06853 0.69 +0.1 121,971 - MPMX19_06853 0.69 -1.3 121,971 - MPMX19_06853 0.69 -0.2 122,135 + MPMX19_06853 0.86 -0.1 122,472 + MPMX19_06854 0.14 -0.7 122,472 + MPMX19_06854 0.14 -0.3 122,472 + MPMX19_06854 0.14 +1.1 122,472 + MPMX19_06854 0.14 +0.7 122,473 - MPMX19_06854 0.15 -1.1 122,473 - MPMX19_06854 0.15 -0.2 122,559 + MPMX19_06854 0.22 +0.6 122,559 + MPMX19_06854 0.22 +1.1 122,751 + MPMX19_06854 0.39 +0.9 122,751 + MPMX19_06854 0.39 +2.1 122,752 - MPMX19_06854 0.39 +0.7 123,042 + MPMX19_06854 0.65 -0.2 123,043 - MPMX19_06854 0.65 +0.6 123,243 + MPMX19_06854 0.83 +0.6 123,243 + MPMX19_06854 0.83 +0.3 123,244 - MPMX19_06854 0.83 +0.6 123,244 - MPMX19_06854 0.83 -0.6 123,244 - MPMX19_06854 0.83 -0.4 123,244 - MPMX19_06854 0.83 -0.4 123,540 + -0.0 123,540 + -0.4 123,540 + +2.1 123,540 + +0.6 123,541 - +2.0 123,541 - -0.8 123,541 - -1.0 123,649 + -1.0 124,148 + MPMX19_06855 0.42 +0.6
Or see this region's nucleotide sequence