Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06435 and MPMX19_06436 are separated by 622 nucleotides MPMX19_06436 and MPMX19_06437 are separated by 63 nucleotides MPMX19_06437 and MPMX19_06438 are separated by 140 nucleotides
MPMX19_06435: MPMX19_06435 - Tyrosine recombinase XerC, at 207,149 to 209,212
_06435
MPMX19_06436: MPMX19_06436 - hypothetical protein, at 209,835 to 211,703
_06436
MPMX19_06437: MPMX19_06437 - DNA-invertase hin, at 211,767 to 212,345
_06437
MPMX19_06438: MPMX19_06438 - DNA-invertase hin, at 212,486 to 213,052
_06438
Position (kb) 209
210
211
212 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 209.009 kb on + strand at 209.009 kb on + strand at 209.009 kb on + strand at 209.010 kb on - strand at 209.010 kb on - strand at 209.045 kb on + strand at 209.045 kb on + strand at 209.045 kb on + strand at 209.045 kb on + strand at 209.046 kb on - strand at 209.046 kb on - strand at 209.059 kb on - strand at 209.351 kb on + strand at 209.351 kb on + strand at 209.351 kb on + strand at 209.351 kb on + strand at 209.351 kb on + strand at 209.351 kb on + strand at 209.352 kb on - strand at 209.352 kb on - strand at 209.352 kb on - strand at 209.352 kb on - strand at 209.352 kb on - strand at 209.352 kb on - strand at 209.352 kb on - strand at 209.352 kb on - strand at 209.352 kb on - strand at 209.352 kb on - strand at 209.352 kb on - strand at 209.377 kb on + strand at 209.377 kb on + strand at 209.377 kb on + strand at 209.377 kb on + strand at 209.378 kb on - strand at 209.378 kb on - strand at 209.378 kb on - strand at 209.378 kb on - strand at 209.483 kb on - strand at 209.483 kb on - strand at 209.483 kb on - strand at 209.483 kb on - strand at 209.503 kb on + strand at 209.503 kb on + strand at 209.503 kb on + strand at 209.503 kb on + strand at 209.503 kb on + strand at 209.503 kb on + strand at 209.503 kb on + strand at 209.504 kb on - strand at 209.504 kb on - strand at 209.504 kb on - strand at 209.504 kb on - strand at 209.504 kb on - strand at 209.504 kb on - strand at 209.504 kb on - strand at 209.541 kb on + strand at 209.541 kb on + strand at 209.541 kb on + strand at 209.541 kb on + strand at 209.541 kb on + strand at 209.541 kb on + strand at 209.542 kb on - strand at 209.542 kb on - strand at 209.542 kb on - strand at 209.542 kb on - strand at 209.579 kb on - strand at 209.579 kb on - strand at 209.579 kb on - strand at 209.677 kb on + strand at 209.677 kb on + strand at 209.677 kb on + strand at 209.677 kb on + strand at 209.677 kb on + strand at 209.677 kb on + strand at 209.677 kb on + strand at 209.677 kb on + strand at 209.677 kb on + strand at 209.677 kb on + strand at 209.677 kb on + strand at 209.677 kb on + strand at 209.677 kb on + strand at 209.677 kb on + strand at 209.677 kb on + strand at 209.677 kb on + strand at 209.677 kb on + strand at 209.677 kb on + strand at 209.677 kb on + strand at 209.677 kb on + strand at 209.677 kb on + strand at 209.677 kb on + strand at 209.677 kb on + strand at 209.677 kb on + strand at 209.677 kb on + strand at 209.678 kb on - strand at 209.678 kb on - strand at 209.678 kb on - strand at 209.678 kb on - strand at 209.678 kb on - strand at 209.678 kb on - strand at 209.678 kb on - strand at 209.678 kb on - strand at 209.678 kb on - strand at 209.678 kb on - strand at 209.678 kb on - strand at 209.678 kb on - strand at 209.678 kb on - strand at 209.678 kb on - strand at 209.678 kb on - strand at 209.678 kb on - strand at 209.678 kb on - strand at 209.678 kb on - strand at 209.920 kb on + strand at 209.920 kb on + strand at 209.920 kb on + strand at 209.920 kb on + strand at 209.920 kb on + strand at 209.920 kb on + strand at 209.920 kb on + strand at 209.920 kb on + strand at 209.921 kb on - strand at 209.921 kb on - strand at 209.921 kb on - strand at 209.921 kb on - strand at 209.921 kb on - strand at 210.259 kb on + strand, within MPMX19_06436 at 210.347 kb on + strand, within MPMX19_06436 at 210.347 kb on + strand, within MPMX19_06436 at 210.348 kb on - strand, within MPMX19_06436 at 210.348 kb on - strand, within MPMX19_06436 at 210.348 kb on - strand, within MPMX19_06436 at 210.364 kb on + strand, within MPMX19_06436 at 210.364 kb on + strand, within MPMX19_06436 at 210.364 kb on + strand, within MPMX19_06436 at 210.365 kb on - strand, within MPMX19_06436 at 210.365 kb on - strand, within MPMX19_06436 at 210.365 kb on - strand, within MPMX19_06436 at 210.365 kb on - strand, within MPMX19_06436 at 210.365 kb on - strand, within MPMX19_06436 at 210.365 kb on - strand, within MPMX19_06436 at 210.365 kb on - strand, within MPMX19_06436 at 210.365 kb on - strand, within MPMX19_06436 at 210.472 kb on + strand, within MPMX19_06436 at 210.586 kb on + strand, within MPMX19_06436 at 210.586 kb on + strand, within MPMX19_06436 at 210.586 kb on + strand, within MPMX19_06436 at 210.587 kb on - strand, within MPMX19_06436 at 210.587 kb on - strand, within MPMX19_06436 at 210.587 kb on - strand, within MPMX19_06436 at 210.788 kb on + strand, within MPMX19_06436 at 210.789 kb on - strand, within MPMX19_06436 at 211.351 kb on + strand, within MPMX19_06436 at 211.351 kb on + strand, within MPMX19_06436 at 211.352 kb on - strand, within MPMX19_06436 at 211.459 kb on + strand, within MPMX19_06436 at 211.459 kb on + strand, within MPMX19_06436 at 211.459 kb on + strand, within MPMX19_06436 at 211.459 kb on + strand, within MPMX19_06436 at 211.459 kb on + strand, within MPMX19_06436 at 211.459 kb on + strand, within MPMX19_06436 at 211.459 kb on + strand, within MPMX19_06436 at 211.459 kb on + strand, within MPMX19_06436 at 211.459 kb on + strand, within MPMX19_06436 at 211.459 kb on + strand, within MPMX19_06436 at 211.459 kb on + strand, within MPMX19_06436 at 211.459 kb on + strand, within MPMX19_06436 at 211.460 kb on - strand, within MPMX19_06436 at 211.460 kb on - strand, within MPMX19_06436 at 211.460 kb on - strand, within MPMX19_06436 at 211.460 kb on - strand, within MPMX19_06436 at 211.460 kb on - strand, within MPMX19_06436 at 211.460 kb on - strand, within MPMX19_06436 at 211.460 kb on - strand, within MPMX19_06436 at 211.460 kb on - strand, within MPMX19_06436 at 211.460 kb on - strand, within MPMX19_06436 at 211.460 kb on - strand, within MPMX19_06436 at 211.460 kb on - strand, within MPMX19_06436 at 211.541 kb on + strand at 211.541 kb on + strand at 211.541 kb on + strand at 211.541 kb on + strand at 211.541 kb on + strand at 211.541 kb on + strand at 211.541 kb on + strand at 211.541 kb on + strand at 211.541 kb on + strand at 211.541 kb on + strand at 211.542 kb on - strand at 211.542 kb on - strand at 211.542 kb on - strand at 211.542 kb on - strand at 211.542 kb on - strand at 211.542 kb on - strand at 211.542 kb on - strand at 211.542 kb on - strand at 211.542 kb on - strand at 211.542 kb on - strand at 211.542 kb on - strand at 211.543 kb on + strand at 211.543 kb on + strand at 211.543 kb on + strand at 211.544 kb on - strand at 211.544 kb on - strand at 211.629 kb on - strand at 211.629 kb on - strand at 211.629 kb on - strand at 211.645 kb on + strand at 211.646 kb on - strand at 211.667 kb on - strand at 211.758 kb on + strand at 211.758 kb on + strand at 211.758 kb on + strand at 211.758 kb on + strand at 211.758 kb on + strand at 211.759 kb on - strand at 211.759 kb on - strand at 211.785 kb on - strand at 211.785 kb on - strand at 211.785 kb on - strand at 211.785 kb on - strand at 211.882 kb on - strand, within MPMX19_06437 at 211.882 kb on - strand, within MPMX19_06437 at 212.120 kb on + strand, within MPMX19_06437 at 212.121 kb on - strand, within MPMX19_06437 at 212.254 kb on + strand, within MPMX19_06437 at 212.254 kb on + strand, within MPMX19_06437 at 212.254 kb on + strand, within MPMX19_06437 at 212.280 kb on + strand, within MPMX19_06437 at 212.281 kb on - strand, within MPMX19_06437 at 212.332 kb on + strand at 212.333 kb on - strand at 212.333 kb on - strand at 212.442 kb on - strand at 212.442 kb on - strand at 212.442 kb on - strand at 212.442 kb on - strand at 212.465 kb on + strand at 212.465 kb on + strand at 212.465 kb on + strand at 212.465 kb on + strand at 212.465 kb on + strand at 212.465 kb on + strand at 212.465 kb on + strand at 212.466 kb on - strand at 212.466 kb on - strand at 212.483 kb on + strand at 212.483 kb on + strand at 212.483 kb on + strand at 212.483 kb on + strand at 212.483 kb on + strand at 212.483 kb on + strand at 212.483 kb on + strand at 212.483 kb on + strand at 212.484 kb on - strand at 212.484 kb on - strand at 212.484 kb on - strand at 212.484 kb on - strand at 212.484 kb on - strand at 212.484 kb on - strand at 212.484 kb on - strand at 212.484 kb on - strand at 212.484 kb on - strand at 212.484 kb on - strand at 212.484 kb on - strand at 212.484 kb on - strand at 212.484 kb on - strand at 212.556 kb on + strand, within MPMX19_06438 at 212.556 kb on + strand, within MPMX19_06438 at 212.575 kb on + strand, within MPMX19_06438 at 212.575 kb on + strand, within MPMX19_06438 at 212.576 kb on - strand, within MPMX19_06438 at 212.576 kb on - strand, within MPMX19_06438
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 209,009 + +0.7 209,009 + -1.3 209,009 + +1.4 209,010 - +0.2 209,010 - +1.1 209,045 + -1.1 209,045 + +0.8 209,045 + +0.3 209,045 + +0.7 209,046 - +0.1 209,046 - -2.3 209,059 - -0.3 209,351 + -0.5 209,351 + +1.1 209,351 + -0.3 209,351 + -0.4 209,351 + -0.2 209,351 + +0.8 209,352 - -0.5 209,352 - -1.6 209,352 - -0.3 209,352 - +0.9 209,352 - -0.3 209,352 - -0.1 209,352 - -0.2 209,352 - +1.6 209,352 - -0.3 209,352 - +0.7 209,352 - -0.4 209,377 + -2.3 209,377 + +0.2 209,377 + -0.6 209,377 + -0.0 209,378 - +0.3 209,378 - -1.6 209,378 - -0.2 209,378 - -1.1 209,483 - +0.4 209,483 - +0.9 209,483 - -0.3 209,483 - +0.7 209,503 + +0.9 209,503 + -0.4 209,503 + +0.3 209,503 + -0.2 209,503 + -1.6 209,503 + -0.2 209,503 + +0.4 209,504 - -0.6 209,504 - -0.2 209,504 - -0.3 209,504 - +0.8 209,504 - -0.4 209,504 - -0.9 209,504 - +1.3 209,541 + +0.1 209,541 + -0.5 209,541 + -0.9 209,541 + -0.4 209,541 + -0.9 209,541 + -1.2 209,542 - -0.1 209,542 - -0.6 209,542 - -1.2 209,542 - -1.5 209,579 - -1.2 209,579 - -1.8 209,579 - +0.1 209,677 + +0.1 209,677 + +1.0 209,677 + -1.5 209,677 + -0.1 209,677 + -1.2 209,677 + +1.0 209,677 + +0.1 209,677 + +0.4 209,677 + -0.3 209,677 + +1.9 209,677 + -0.9 209,677 + -0.7 209,677 + +1.3 209,677 + +0.4 209,677 + -0.6 209,677 + -0.1 209,677 + -0.7 209,677 + -0.5 209,677 + -1.3 209,677 + -0.3 209,677 + +1.7 209,677 + +0.2 209,677 + -1.2 209,677 + -0.6 209,677 + -0.3 209,678 - -0.0 209,678 - -1.2 209,678 - +0.4 209,678 - +0.5 209,678 - -0.2 209,678 - +0.1 209,678 - -0.2 209,678 - -1.6 209,678 - -0.9 209,678 - -0.2 209,678 - +0.7 209,678 - -0.6 209,678 - -1.3 209,678 - +1.0 209,678 - -1.2 209,678 - -1.0 209,678 - -1.4 209,678 - +0.1 209,920 + -1.3 209,920 + -0.4 209,920 + -1.1 209,920 + +0.9 209,920 + +2.5 209,920 + -0.3 209,920 + +0.7 209,920 + -0.1 209,921 - +0.2 209,921 - +0.8 209,921 - +0.3 209,921 - -0.6 209,921 - +0.3 210,259 + MPMX19_06436 0.23 -1.6 210,347 + MPMX19_06436 0.27 -1.6 210,347 + MPMX19_06436 0.27 +0.4 210,348 - MPMX19_06436 0.27 -0.1 210,348 - MPMX19_06436 0.27 +0.0 210,348 - MPMX19_06436 0.27 -0.1 210,364 + MPMX19_06436 0.28 -1.0 210,364 + MPMX19_06436 0.28 -0.6 210,364 + MPMX19_06436 0.28 -0.1 210,365 - MPMX19_06436 0.28 -1.1 210,365 - MPMX19_06436 0.28 -1.1 210,365 - MPMX19_06436 0.28 -1.1 210,365 - MPMX19_06436 0.28 -0.4 210,365 - MPMX19_06436 0.28 -1.0 210,365 - MPMX19_06436 0.28 +0.2 210,365 - MPMX19_06436 0.28 +0.7 210,365 - MPMX19_06436 0.28 -2.5 210,472 + MPMX19_06436 0.34 -0.0 210,586 + MPMX19_06436 0.40 +0.7 210,586 + MPMX19_06436 0.40 +0.5 210,586 + MPMX19_06436 0.40 -2.6 210,587 - MPMX19_06436 0.40 -1.6 210,587 - MPMX19_06436 0.40 -0.8 210,587 - MPMX19_06436 0.40 -1.1 210,788 + MPMX19_06436 0.51 -2.5 210,789 - MPMX19_06436 0.51 -1.9 211,351 + MPMX19_06436 0.81 -1.6 211,351 + MPMX19_06436 0.81 -0.1 211,352 - MPMX19_06436 0.81 -1.2 211,459 + MPMX19_06436 0.87 -0.0 211,459 + MPMX19_06436 0.87 +0.3 211,459 + MPMX19_06436 0.87 -1.1 211,459 + MPMX19_06436 0.87 +0.5 211,459 + MPMX19_06436 0.87 +0.2 211,459 + MPMX19_06436 0.87 +0.5 211,459 + MPMX19_06436 0.87 -0.7 211,459 + MPMX19_06436 0.87 -1.0 211,459 + MPMX19_06436 0.87 -0.8 211,459 + MPMX19_06436 0.87 -1.3 211,459 + MPMX19_06436 0.87 +1.1 211,459 + MPMX19_06436 0.87 +0.4 211,460 - MPMX19_06436 0.87 -1.1 211,460 - MPMX19_06436 0.87 -0.4 211,460 - MPMX19_06436 0.87 -0.6 211,460 - MPMX19_06436 0.87 -0.1 211,460 - MPMX19_06436 0.87 +1.7 211,460 - MPMX19_06436 0.87 -0.0 211,460 - MPMX19_06436 0.87 -0.9 211,460 - MPMX19_06436 0.87 -1.6 211,460 - MPMX19_06436 0.87 -0.1 211,460 - MPMX19_06436 0.87 -0.3 211,460 - MPMX19_06436 0.87 -1.6 211,541 + -2.1 211,541 + +0.4 211,541 + +0.9 211,541 + +0.7 211,541 + +0.2 211,541 + +1.2 211,541 + -0.0 211,541 + -0.9 211,541 + +0.1 211,541 + -1.1 211,542 - +2.0 211,542 - -1.9 211,542 - -2.1 211,542 - -0.6 211,542 - -0.5 211,542 - -0.4 211,542 - -0.3 211,542 - +0.3 211,542 - +0.2 211,542 - +0.5 211,542 - +2.1 211,543 + -0.6 211,543 + -0.3 211,543 + -1.3 211,544 - +0.7 211,544 - +0.7 211,629 - +0.3 211,629 - +0.1 211,629 - -0.1 211,645 + +0.7 211,646 - -0.3 211,667 - -2.1 211,758 + -1.3 211,758 + +1.0 211,758 + -0.6 211,758 + -0.1 211,758 + +0.4 211,759 - -1.1 211,759 - +0.9 211,785 - +0.8 211,785 - -2.3 211,785 - +1.7 211,785 - -0.3 211,882 - MPMX19_06437 0.20 -0.1 211,882 - MPMX19_06437 0.20 -2.5 212,120 + MPMX19_06437 0.61 +0.3 212,121 - MPMX19_06437 0.61 +1.4 212,254 + MPMX19_06437 0.84 -1.3 212,254 + MPMX19_06437 0.84 -0.3 212,254 + MPMX19_06437 0.84 -1.2 212,280 + MPMX19_06437 0.89 +0.4 212,281 - MPMX19_06437 0.89 -0.2 212,332 + -0.5 212,333 - +1.3 212,333 - -0.1 212,442 - -2.3 212,442 - -1.3 212,442 - +0.7 212,442 - -0.7 212,465 + +0.2 212,465 + -0.3 212,465 + -0.9 212,465 + -0.1 212,465 + +2.2 212,465 + -0.3 212,465 + -0.1 212,466 - -0.1 212,466 - -0.7 212,483 + +0.4 212,483 + -0.3 212,483 + +0.2 212,483 + +0.1 212,483 + -0.5 212,483 + +0.2 212,483 + -0.2 212,483 + -0.3 212,484 - -0.3 212,484 - -3.0 212,484 - +0.7 212,484 - +0.7 212,484 - -0.9 212,484 - -0.7 212,484 - -0.2 212,484 - -0.1 212,484 - -0.3 212,484 - +0.7 212,484 - -0.6 212,484 - +0.0 212,484 - -1.1 212,556 + MPMX19_06438 0.12 -2.3 212,556 + MPMX19_06438 0.12 +0.5 212,575 + MPMX19_06438 0.16 +1.7 212,575 + MPMX19_06438 0.16 +0.1 212,576 - MPMX19_06438 0.16 +0.4 212,576 - MPMX19_06438 0.16 -0.7
Or see this region's nucleotide sequence