Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06196

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06193 and MPMX19_06194 are separated by 11 nucleotidesMPMX19_06194 and MPMX19_06195 are separated by 24 nucleotidesMPMX19_06195 and MPMX19_06196 are separated by 116 nucleotidesMPMX19_06196 and MPMX19_06197 overlap by 4 nucleotidesMPMX19_06197 and MPMX19_06198 are separated by 72 nucleotides MPMX19_06193: MPMX19_06193 - Flagellar hook-basal body complex protein FliE, at 382,243 to 382,602 _06193 MPMX19_06194: MPMX19_06194 - Flagellar basal-body rod protein FlgC, at 382,614 to 383,033 _06194 MPMX19_06195: MPMX19_06195 - hypothetical protein, at 383,058 to 383,450 _06195 MPMX19_06196: MPMX19_06196 - Flagellum-specific ATP synthase, at 383,567 to 384,934 _06196 MPMX19_06197: MPMX19_06197 - hypothetical protein, at 384,931 to 385,536 _06197 MPMX19_06198: MPMX19_06198 - hypothetical protein, at 385,609 to 385,992 _06198 Position (kb) 383 384 385Strain fitness (log2 ratio) -2 -1 0 1 2at 382.753 kb on + strand, within MPMX19_06194at 382.753 kb on + strand, within MPMX19_06194at 382.753 kb on + strand, within MPMX19_06194at 382.753 kb on + strand, within MPMX19_06194at 382.753 kb on + strand, within MPMX19_06194at 382.753 kb on + strand, within MPMX19_06194at 382.753 kb on + strand, within MPMX19_06194at 382.753 kb on + strand, within MPMX19_06194at 382.754 kb on - strand, within MPMX19_06194at 382.754 kb on - strand, within MPMX19_06194at 382.754 kb on - strand, within MPMX19_06194at 382.754 kb on - strand, within MPMX19_06194at 382.754 kb on - strand, within MPMX19_06194at 382.754 kb on - strand, within MPMX19_06194at 382.754 kb on - strand, within MPMX19_06194at 382.754 kb on - strand, within MPMX19_06194at 382.754 kb on - strand, within MPMX19_06194at 382.789 kb on + strand, within MPMX19_06194at 382.789 kb on + strand, within MPMX19_06194at 382.789 kb on + strand, within MPMX19_06194at 382.789 kb on + strand, within MPMX19_06194at 382.790 kb on - strand, within MPMX19_06194at 382.898 kb on - strand, within MPMX19_06194at 382.925 kb on + strand, within MPMX19_06194at 382.925 kb on + strand, within MPMX19_06194at 382.926 kb on - strand, within MPMX19_06194at 383.050 kb on + strandat 383.050 kb on + strandat 383.051 kb on - strandat 383.051 kb on - strandat 383.051 kb on - strandat 383.051 kb on - strandat 383.051 kb on - strandat 383.051 kb on - strandat 383.339 kb on - strand, within MPMX19_06195at 383.398 kb on + strand, within MPMX19_06195at 383.398 kb on + strand, within MPMX19_06195at 383.398 kb on + strand, within MPMX19_06195at 383.399 kb on - strand, within MPMX19_06195at 383.524 kb on + strandat 383.524 kb on + strandat 384.434 kb on + strand, within MPMX19_06196at 384.434 kb on + strand, within MPMX19_06196at 384.434 kb on + strand, within MPMX19_06196at 384.434 kb on + strand, within MPMX19_06196at 384.435 kb on - strand, within MPMX19_06196at 384.743 kb on + strand, within MPMX19_06196at 384.743 kb on + strand, within MPMX19_06196at 384.743 kb on + strand, within MPMX19_06196at 384.743 kb on + strand, within MPMX19_06196at 384.743 kb on + strand, within MPMX19_06196at 384.743 kb on + strand, within MPMX19_06196at 384.743 kb on + strand, within MPMX19_06196at 384.743 kb on + strand, within MPMX19_06196at 384.744 kb on - strand, within MPMX19_06196at 384.744 kb on - strand, within MPMX19_06196at 384.744 kb on - strand, within MPMX19_06196at 384.744 kb on - strand, within MPMX19_06196at 384.744 kb on - strand, within MPMX19_06196at 384.744 kb on - strand, within MPMX19_06196at 384.744 kb on - strand, within MPMX19_06196at 384.744 kb on - strand, within MPMX19_06196at 384.744 kb on - strand, within MPMX19_06196at 384.779 kb on + strand, within MPMX19_06196at 384.779 kb on + strand, within MPMX19_06196at 384.780 kb on - strand, within MPMX19_06196at 384.780 kb on - strand, within MPMX19_06196at 384.780 kb on - strand, within MPMX19_06196at 384.942 kb on + strandat 384.943 kb on - strandat 384.943 kb on - strandat 385.100 kb on - strand, within MPMX19_06197at 385.100 kb on - strand, within MPMX19_06197at 385.477 kb on + strandat 385.477 kb on + strandat 385.477 kb on + strandat 385.477 kb on + strandat 385.477 kb on + strandat 385.477 kb on + strandat 385.477 kb on + strandat 385.477 kb on + strandat 385.478 kb on - strandat 385.478 kb on - strandat 385.478 kb on - strandat 385.478 kb on - strandat 385.478 kb on - strandat 385.478 kb on - strandat 385.750 kb on + strand, within MPMX19_06198at 385.750 kb on + strand, within MPMX19_06198at 385.750 kb on + strand, within MPMX19_06198at 385.750 kb on + strand, within MPMX19_06198at 385.750 kb on + strand, within MPMX19_06198at 385.750 kb on + strand, within MPMX19_06198at 385.750 kb on + strand, within MPMX19_06198at 385.750 kb on + strand, within MPMX19_06198at 385.750 kb on + strand, within MPMX19_06198at 385.750 kb on + strand, within MPMX19_06198at 385.751 kb on - strand, within MPMX19_06198at 385.751 kb on - strand, within MPMX19_06198at 385.751 kb on - strand, within MPMX19_06198at 385.751 kb on - strand, within MPMX19_06198at 385.751 kb on - strand, within MPMX19_06198

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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382,753 + MPMX19_06194 0.33 +0.0
382,753 + MPMX19_06194 0.33 -1.0
382,753 + MPMX19_06194 0.33 +0.3
382,753 + MPMX19_06194 0.33 +0.0
382,753 + MPMX19_06194 0.33 -1.4
382,753 + MPMX19_06194 0.33 +1.4
382,753 + MPMX19_06194 0.33 -1.2
382,753 + MPMX19_06194 0.33 -1.1
382,754 - MPMX19_06194 0.33 -1.0
382,754 - MPMX19_06194 0.33 -0.1
382,754 - MPMX19_06194 0.33 -2.2
382,754 - MPMX19_06194 0.33 -0.8
382,754 - MPMX19_06194 0.33 +0.6
382,754 - MPMX19_06194 0.33 +0.6
382,754 - MPMX19_06194 0.33 +0.6
382,754 - MPMX19_06194 0.33 +0.9
382,754 - MPMX19_06194 0.33 +0.6
382,789 + MPMX19_06194 0.42 +1.0
382,789 + MPMX19_06194 0.42 -1.7
382,789 + MPMX19_06194 0.42 +0.2
382,789 + MPMX19_06194 0.42 +0.1
382,790 - MPMX19_06194 0.42 -0.9
382,898 - MPMX19_06194 0.68 -0.1
382,925 + MPMX19_06194 0.74 +0.0
382,925 + MPMX19_06194 0.74 -0.1
382,926 - MPMX19_06194 0.74 -2.1
383,050 + +0.0
383,050 + -0.7
383,051 - +1.0
383,051 - +0.6
383,051 - -1.0
383,051 - +0.3
383,051 - +0.0
383,051 - +1.3
383,339 - MPMX19_06195 0.72 -0.4
383,398 + MPMX19_06195 0.87 +0.6
383,398 + MPMX19_06195 0.87 +0.6
383,398 + MPMX19_06195 0.87 -1.4
383,399 - MPMX19_06195 0.87 -0.3
383,524 + +0.2
383,524 + -1.8
384,434 + MPMX19_06196 0.63 +0.5
384,434 + MPMX19_06196 0.63 +0.0
384,434 + MPMX19_06196 0.63 -0.4
384,434 + MPMX19_06196 0.63 +0.4
384,435 - MPMX19_06196 0.63 +0.4
384,743 + MPMX19_06196 0.86 +1.2
384,743 + MPMX19_06196 0.86 -1.4
384,743 + MPMX19_06196 0.86 -0.4
384,743 + MPMX19_06196 0.86 -1.9
384,743 + MPMX19_06196 0.86 -0.8
384,743 + MPMX19_06196 0.86 +0.9
384,743 + MPMX19_06196 0.86 +0.8
384,743 + MPMX19_06196 0.86 +1.3
384,744 - MPMX19_06196 0.86 -1.0
384,744 - MPMX19_06196 0.86 +0.4
384,744 - MPMX19_06196 0.86 +2.4
384,744 - MPMX19_06196 0.86 +0.9
384,744 - MPMX19_06196 0.86 +0.2
384,744 - MPMX19_06196 0.86 -1.0
384,744 - MPMX19_06196 0.86 +1.2
384,744 - MPMX19_06196 0.86 +0.8
384,744 - MPMX19_06196 0.86 +1.9
384,779 + MPMX19_06196 0.89 -0.3
384,779 + MPMX19_06196 0.89 -0.6
384,780 - MPMX19_06196 0.89 +0.3
384,780 - MPMX19_06196 0.89 -1.0
384,780 - MPMX19_06196 0.89 -1.7
384,942 + -0.4
384,943 - -1.1
384,943 - +0.1
385,100 - MPMX19_06197 0.28 -0.3
385,100 - MPMX19_06197 0.28 -0.6
385,477 + -0.5
385,477 + -0.3
385,477 + -0.6
385,477 + +0.3
385,477 + -0.4
385,477 + -1.0
385,477 + +0.1
385,477 + -0.1
385,478 - -0.4
385,478 - -0.9
385,478 - -0.4
385,478 - +0.4
385,478 - +0.6
385,478 - -1.3
385,750 + MPMX19_06198 0.37 -1.2
385,750 + MPMX19_06198 0.37 -1.4
385,750 + MPMX19_06198 0.37 -0.7
385,750 + MPMX19_06198 0.37 +0.1
385,750 + MPMX19_06198 0.37 +0.2
385,750 + MPMX19_06198 0.37 -1.0
385,750 + MPMX19_06198 0.37 -0.3
385,750 + MPMX19_06198 0.37 -1.0
385,750 + MPMX19_06198 0.37 +0.2
385,750 + MPMX19_06198 0.37 -1.4
385,751 - MPMX19_06198 0.37 -1.4
385,751 - MPMX19_06198 0.37 -1.4
385,751 - MPMX19_06198 0.37 -0.2
385,751 - MPMX19_06198 0.37 +0.6
385,751 - MPMX19_06198 0.37 -0.4

Or see this region's nucleotide sequence