Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05743

Experiment: NLN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05741 and MPMX19_05742 are separated by 236 nucleotidesMPMX19_05742 and MPMX19_05743 overlap by 4 nucleotidesMPMX19_05743 and MPMX19_05744 are separated by 17 nucleotides MPMX19_05741: MPMX19_05741 - hypothetical protein, at 457,316 to 458,698 _05741 MPMX19_05742: MPMX19_05742 - hypothetical protein, at 458,935 to 459,600 _05742 MPMX19_05743: MPMX19_05743 - Anti-sigma-E factor ChrR, at 459,597 to 460,325 _05743 MPMX19_05744: MPMX19_05744 - hypothetical protein, at 460,343 to 462,427 _05744 Position (kb) 459 460 461Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 458.730 kb on - strandat 458.781 kb on - strandat 458.794 kb on - strandat 458.794 kb on - strandat 458.815 kb on + strandat 458.997 kb on + strandat 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.154 kb on + strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.155 kb on - strand, within MPMX19_05742at 459.241 kb on + strand, within MPMX19_05742at 459.241 kb on + strand, within MPMX19_05742at 459.242 kb on - strand, within MPMX19_05742at 459.242 kb on - strand, within MPMX19_05742at 459.242 kb on - strand, within MPMX19_05742at 459.242 kb on - strand, within MPMX19_05742at 459.242 kb on - strand, within MPMX19_05742at 459.242 kb on - strand, within MPMX19_05742at 459.672 kb on + strand, within MPMX19_05743at 459.672 kb on + strand, within MPMX19_05743at 459.672 kb on + strand, within MPMX19_05743at 459.672 kb on + strand, within MPMX19_05743at 459.672 kb on + strand, within MPMX19_05743at 459.672 kb on + strand, within MPMX19_05743at 459.672 kb on + strand, within MPMX19_05743at 459.673 kb on - strand, within MPMX19_05743at 459.673 kb on - strand, within MPMX19_05743at 459.673 kb on - strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 460.044 kb on - strand, within MPMX19_05743at 460.170 kb on + strand, within MPMX19_05743at 460.171 kb on - strand, within MPMX19_05743at 460.323 kb on + strandat 460.324 kb on - strandat 460.324 kb on - strandat 460.324 kb on - strandat 461.277 kb on - strand, within MPMX19_05744at 461.277 kb on - strand, within MPMX19_05744at 461.277 kb on - strand, within MPMX19_05744

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NLN
remove
458,730 - +0.5
458,781 - -1.1
458,794 - -1.5
458,794 - +0.1
458,815 + +0.9
458,997 + -0.1
459,154 + MPMX19_05742 0.33 +0.3
459,154 + MPMX19_05742 0.33 -1.3
459,154 + MPMX19_05742 0.33 -0.3
459,154 + MPMX19_05742 0.33 -0.3
459,154 + MPMX19_05742 0.33 -2.5
459,154 + MPMX19_05742 0.33 -0.8
459,154 + MPMX19_05742 0.33 -2.6
459,154 + MPMX19_05742 0.33 +1.3
459,154 + MPMX19_05742 0.33 +1.0
459,154 + MPMX19_05742 0.33 -1.3
459,154 + MPMX19_05742 0.33 +0.4
459,154 + MPMX19_05742 0.33 -1.0
459,154 + MPMX19_05742 0.33 -0.3
459,154 + MPMX19_05742 0.33 -1.7
459,154 + MPMX19_05742 0.33 -0.5
459,154 + MPMX19_05742 0.33 -0.9
459,154 + MPMX19_05742 0.33 -0.8
459,154 + MPMX19_05742 0.33 +0.5
459,154 + MPMX19_05742 0.33 +0.5
459,154 + MPMX19_05742 0.33 -0.0
459,154 + MPMX19_05742 0.33 +0.1
459,154 + MPMX19_05742 0.33 +1.0
459,154 + MPMX19_05742 0.33 -0.7
459,155 - MPMX19_05742 0.33 +0.3
459,155 - MPMX19_05742 0.33 +0.5
459,155 - MPMX19_05742 0.33 +0.2
459,155 - MPMX19_05742 0.33 -2.0
459,155 - MPMX19_05742 0.33 +0.1
459,155 - MPMX19_05742 0.33 -0.8
459,155 - MPMX19_05742 0.33 +0.1
459,155 - MPMX19_05742 0.33 -1.5
459,155 - MPMX19_05742 0.33 +0.5
459,155 - MPMX19_05742 0.33 -0.5
459,155 - MPMX19_05742 0.33 +1.4
459,155 - MPMX19_05742 0.33 +0.8
459,155 - MPMX19_05742 0.33 -2.8
459,155 - MPMX19_05742 0.33 +0.5
459,155 - MPMX19_05742 0.33 -0.2
459,155 - MPMX19_05742 0.33 -0.4
459,155 - MPMX19_05742 0.33 +1.5
459,155 - MPMX19_05742 0.33 +1.3
459,155 - MPMX19_05742 0.33 -0.2
459,155 - MPMX19_05742 0.33 -2.0
459,155 - MPMX19_05742 0.33 -1.8
459,155 - MPMX19_05742 0.33 -1.2
459,155 - MPMX19_05742 0.33 +0.5
459,241 + MPMX19_05742 0.46 -0.5
459,241 + MPMX19_05742 0.46 +0.4
459,242 - MPMX19_05742 0.46 -0.0
459,242 - MPMX19_05742 0.46 -0.2
459,242 - MPMX19_05742 0.46 +0.8
459,242 - MPMX19_05742 0.46 +0.8
459,242 - MPMX19_05742 0.46 +1.0
459,242 - MPMX19_05742 0.46 -0.8
459,672 + MPMX19_05743 0.10 +0.3
459,672 + MPMX19_05743 0.10 -2.6
459,672 + MPMX19_05743 0.10 -2.3
459,672 + MPMX19_05743 0.10 -0.9
459,672 + MPMX19_05743 0.10 -0.5
459,672 + MPMX19_05743 0.10 +0.3
459,672 + MPMX19_05743 0.10 -0.1
459,673 - MPMX19_05743 0.10 -0.8
459,673 - MPMX19_05743 0.10 -0.5
459,673 - MPMX19_05743 0.10 +0.5
459,969 + MPMX19_05743 0.51 -1.5
459,969 + MPMX19_05743 0.51 -2.3
459,969 + MPMX19_05743 0.51 +0.4
459,969 + MPMX19_05743 0.51 -2.0
459,969 + MPMX19_05743 0.51 -0.5
459,969 + MPMX19_05743 0.51 +0.8
459,969 + MPMX19_05743 0.51 +0.2
459,969 + MPMX19_05743 0.51 +1.5
459,969 + MPMX19_05743 0.51 +1.2
459,969 + MPMX19_05743 0.51 +0.5
459,969 + MPMX19_05743 0.51 -0.8
459,969 + MPMX19_05743 0.51 +0.2
459,969 + MPMX19_05743 0.51 +1.3
459,969 + MPMX19_05743 0.51 +0.2
459,970 - MPMX19_05743 0.51 -0.0
459,970 - MPMX19_05743 0.51 -1.8
459,970 - MPMX19_05743 0.51 +0.2
459,970 - MPMX19_05743 0.51 -0.5
459,970 - MPMX19_05743 0.51 +1.7
459,970 - MPMX19_05743 0.51 -0.8
459,970 - MPMX19_05743 0.51 +0.5
459,970 - MPMX19_05743 0.51 -0.5
459,970 - MPMX19_05743 0.51 +1.3
459,970 - MPMX19_05743 0.51 +1.2
459,970 - MPMX19_05743 0.51 +0.5
459,970 - MPMX19_05743 0.51 -0.1
459,970 - MPMX19_05743 0.51 +1.5
459,970 - MPMX19_05743 0.51 -1.6
459,970 - MPMX19_05743 0.51 -0.8
459,970 - MPMX19_05743 0.51 +0.5
459,970 - MPMX19_05743 0.51 +0.4
459,970 - MPMX19_05743 0.51 +0.5
459,970 - MPMX19_05743 0.51 -1.3
460,044 - MPMX19_05743 0.61 -0.5
460,170 + MPMX19_05743 0.79 +0.9
460,171 - MPMX19_05743 0.79 +3.1
460,323 + +0.7
460,324 - -1.0
460,324 - -1.2
460,324 - -1.5
461,277 - MPMX19_05744 0.45 +0.2
461,277 - MPMX19_05744 0.45 +0.5
461,277 - MPMX19_05744 0.45 -1.0

Or see this region's nucleotide sequence