Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05429

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05428 and MPMX19_05429 are separated by 142 nucleotidesMPMX19_05429 and MPMX19_05430 are separated by 62 nucleotides MPMX19_05428: MPMX19_05428 - PCP degradation transcriptional activation protein, at 119,463 to 120,377 _05428 MPMX19_05429: MPMX19_05429 - Riboflavin transporter RibZ, at 120,520 to 121,953 _05429 MPMX19_05430: MPMX19_05430 - HTH-type transcriptional regulator DmlR, at 122,016 to 122,933 _05430 Position (kb) 120 121 122Strain fitness (log2 ratio) -2 -1 0 1 2at 120.052 kb on + strand, within MPMX19_05428at 120.052 kb on + strand, within MPMX19_05428at 120.052 kb on + strand, within MPMX19_05428at 120.052 kb on + strand, within MPMX19_05428at 120.052 kb on + strand, within MPMX19_05428at 120.052 kb on + strand, within MPMX19_05428at 120.053 kb on - strand, within MPMX19_05428at 120.053 kb on - strand, within MPMX19_05428at 120.053 kb on - strand, within MPMX19_05428at 120.053 kb on - strand, within MPMX19_05428at 120.053 kb on - strand, within MPMX19_05428at 120.053 kb on - strand, within MPMX19_05428at 120.053 kb on - strand, within MPMX19_05428at 120.053 kb on - strand, within MPMX19_05428at 120.389 kb on + strandat 120.389 kb on + strandat 120.389 kb on + strandat 120.440 kb on + strandat 120.441 kb on - strandat 120.441 kb on - strandat 120.483 kb on + strandat 120.483 kb on + strandat 120.721 kb on + strand, within MPMX19_05429at 120.721 kb on + strand, within MPMX19_05429at 120.721 kb on + strand, within MPMX19_05429at 120.722 kb on - strand, within MPMX19_05429at 120.722 kb on - strand, within MPMX19_05429at 121.210 kb on + strand, within MPMX19_05429at 121.210 kb on + strand, within MPMX19_05429at 121.210 kb on + strand, within MPMX19_05429at 121.210 kb on + strand, within MPMX19_05429at 121.210 kb on + strand, within MPMX19_05429at 121.210 kb on + strand, within MPMX19_05429at 121.211 kb on - strand, within MPMX19_05429at 121.211 kb on - strand, within MPMX19_05429at 121.211 kb on - strand, within MPMX19_05429at 121.211 kb on - strand, within MPMX19_05429at 121.211 kb on - strand, within MPMX19_05429at 121.211 kb on - strand, within MPMX19_05429at 121.211 kb on - strand, within MPMX19_05429at 121.642 kb on + strand, within MPMX19_05429at 121.643 kb on - strand, within MPMX19_05429at 121.643 kb on - strand, within MPMX19_05429at 121.643 kb on - strand, within MPMX19_05429at 121.643 kb on - strand, within MPMX19_05429at 121.643 kb on - strand, within MPMX19_05429at 122.051 kb on + strandat 122.051 kb on + strandat 122.051 kb on + strandat 122.052 kb on - strandat 122.052 kb on - strandat 122.104 kb on + strandat 122.104 kb on + strandat 122.419 kb on + strand, within MPMX19_05430at 122.419 kb on + strand, within MPMX19_05430at 122.419 kb on + strand, within MPMX19_05430at 122.419 kb on + strand, within MPMX19_05430at 122.420 kb on - strand, within MPMX19_05430

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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120,052 + MPMX19_05428 0.64 -0.7
120,052 + MPMX19_05428 0.64 -0.5
120,052 + MPMX19_05428 0.64 -0.5
120,052 + MPMX19_05428 0.64 -0.3
120,052 + MPMX19_05428 0.64 -0.7
120,052 + MPMX19_05428 0.64 +0.0
120,053 - MPMX19_05428 0.64 -1.2
120,053 - MPMX19_05428 0.64 -1.7
120,053 - MPMX19_05428 0.64 -1.7
120,053 - MPMX19_05428 0.64 -0.8
120,053 - MPMX19_05428 0.64 -0.1
120,053 - MPMX19_05428 0.64 -0.1
120,053 - MPMX19_05428 0.64 -0.7
120,053 - MPMX19_05428 0.64 +0.1
120,389 + -0.2
120,389 + -1.0
120,389 + +0.2
120,440 + +0.2
120,441 - +1.4
120,441 - +1.8
120,483 + +0.4
120,483 + +0.6
120,721 + MPMX19_05429 0.14 -0.4
120,721 + MPMX19_05429 0.14 -1.5
120,721 + MPMX19_05429 0.14 -0.6
120,722 - MPMX19_05429 0.14 -0.2
120,722 - MPMX19_05429 0.14 -0.1
121,210 + MPMX19_05429 0.48 -1.0
121,210 + MPMX19_05429 0.48 -0.2
121,210 + MPMX19_05429 0.48 -1.0
121,210 + MPMX19_05429 0.48 -1.0
121,210 + MPMX19_05429 0.48 -0.7
121,210 + MPMX19_05429 0.48 -0.3
121,211 - MPMX19_05429 0.48 -0.2
121,211 - MPMX19_05429 0.48 +0.3
121,211 - MPMX19_05429 0.48 -1.1
121,211 - MPMX19_05429 0.48 -0.7
121,211 - MPMX19_05429 0.48 -1.7
121,211 - MPMX19_05429 0.48 -0.7
121,211 - MPMX19_05429 0.48 -1.7
121,642 + MPMX19_05429 0.78 +0.2
121,643 - MPMX19_05429 0.78 +0.3
121,643 - MPMX19_05429 0.78 -0.4
121,643 - MPMX19_05429 0.78 -0.5
121,643 - MPMX19_05429 0.78 -1.2
121,643 - MPMX19_05429 0.78 -0.3
122,051 + +0.3
122,051 + -0.3
122,051 + -0.7
122,052 - -2.1
122,052 - +0.2
122,104 + -0.0
122,104 + -1.0
122,419 + MPMX19_05430 0.44 -0.5
122,419 + MPMX19_05430 0.44 +0.0
122,419 + MPMX19_05430 0.44 -0.1
122,419 + MPMX19_05430 0.44 -1.0
122,420 - MPMX19_05430 0.44 -1.7

Or see this region's nucleotide sequence