Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04637

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04636 and MPMX19_04637 overlap by 4 nucleotidesMPMX19_04637 and MPMX19_04638 are separated by 10 nucleotides MPMX19_04636: MPMX19_04636 - D-inositol-3-phosphate glycosyltransferase, at 14,292 to 15,551 _04636 MPMX19_04637: MPMX19_04637 - hypothetical protein, at 15,548 to 17,251 _04637 MPMX19_04638: MPMX19_04638 - D-inositol-3-phosphate glycosyltransferase, at 17,262 to 18,464 _04638 Position (kb) 15 16 17 18Strain fitness (log2 ratio) -2 -1 0 1at 14.682 kb on + strand, within MPMX19_04636at 14.682 kb on + strand, within MPMX19_04636at 15.231 kb on + strand, within MPMX19_04636at 15.232 kb on - strand, within MPMX19_04636at 15.232 kb on - strand, within MPMX19_04636at 15.255 kb on + strand, within MPMX19_04636at 15.255 kb on + strand, within MPMX19_04636at 15.256 kb on - strand, within MPMX19_04636at 15.432 kb on + strandat 15.432 kb on + strandat 15.432 kb on + strandat 15.432 kb on + strandat 15.432 kb on + strandat 15.432 kb on + strandat 15.433 kb on - strandat 15.442 kb on - strandat 15.442 kb on - strandat 15.459 kb on - strandat 15.459 kb on - strandat 15.495 kb on + strandat 15.495 kb on + strandat 15.495 kb on + strandat 15.495 kb on + strandat 15.496 kb on - strandat 15.496 kb on - strandat 15.496 kb on - strandat 15.496 kb on - strandat 15.633 kb on + strandat 15.633 kb on + strandat 15.634 kb on - strandat 15.788 kb on + strand, within MPMX19_04637at 15.788 kb on + strand, within MPMX19_04637at 15.788 kb on + strand, within MPMX19_04637at 15.788 kb on + strand, within MPMX19_04637at 15.788 kb on + strand, within MPMX19_04637at 15.788 kb on + strand, within MPMX19_04637at 15.788 kb on + strand, within MPMX19_04637at 15.788 kb on + strand, within MPMX19_04637at 15.788 kb on + strand, within MPMX19_04637at 15.788 kb on + strand, within MPMX19_04637at 15.788 kb on + strand, within MPMX19_04637at 15.789 kb on - strand, within MPMX19_04637at 15.789 kb on - strand, within MPMX19_04637at 15.789 kb on - strand, within MPMX19_04637at 15.789 kb on - strand, within MPMX19_04637at 15.789 kb on - strand, within MPMX19_04637at 15.789 kb on - strand, within MPMX19_04637at 16.106 kb on - strand, within MPMX19_04637at 16.115 kb on + strand, within MPMX19_04637at 16.115 kb on + strand, within MPMX19_04637at 16.115 kb on + strand, within MPMX19_04637at 16.116 kb on - strand, within MPMX19_04637at 16.290 kb on + strand, within MPMX19_04637at 16.328 kb on + strand, within MPMX19_04637at 16.328 kb on + strand, within MPMX19_04637at 16.328 kb on + strand, within MPMX19_04637at 16.329 kb on - strand, within MPMX19_04637at 16.595 kb on + strand, within MPMX19_04637at 16.595 kb on + strand, within MPMX19_04637at 16.595 kb on + strand, within MPMX19_04637at 16.595 kb on + strand, within MPMX19_04637at 16.595 kb on + strand, within MPMX19_04637at 16.595 kb on + strand, within MPMX19_04637at 16.595 kb on + strand, within MPMX19_04637at 16.595 kb on + strand, within MPMX19_04637at 16.595 kb on + strand, within MPMX19_04637at 16.595 kb on + strand, within MPMX19_04637at 16.596 kb on - strand, within MPMX19_04637at 16.596 kb on - strand, within MPMX19_04637at 16.596 kb on - strand, within MPMX19_04637at 16.596 kb on - strand, within MPMX19_04637at 16.609 kb on - strand, within MPMX19_04637at 16.609 kb on - strand, within MPMX19_04637at 16.640 kb on + strand, within MPMX19_04637at 16.640 kb on + strand, within MPMX19_04637at 16.640 kb on + strand, within MPMX19_04637at 16.640 kb on + strand, within MPMX19_04637at 16.640 kb on + strand, within MPMX19_04637at 16.641 kb on - strand, within MPMX19_04637at 16.641 kb on - strand, within MPMX19_04637at 16.641 kb on - strand, within MPMX19_04637at 16.641 kb on - strand, within MPMX19_04637at 16.677 kb on + strand, within MPMX19_04637at 16.677 kb on + strand, within MPMX19_04637at 16.677 kb on + strand, within MPMX19_04637at 16.678 kb on - strand, within MPMX19_04637at 16.678 kb on - strand, within MPMX19_04637at 16.678 kb on - strand, within MPMX19_04637at 16.678 kb on - strand, within MPMX19_04637at 16.678 kb on - strand, within MPMX19_04637at 16.970 kb on + strand, within MPMX19_04637at 17.341 kb on + strandat 17.341 kb on + strandat 17.341 kb on + strandat 17.341 kb on + strandat 17.342 kb on - strandat 17.342 kb on - strandat 17.342 kb on - strandat 17.590 kb on + strand, within MPMX19_04638at 17.591 kb on - strand, within MPMX19_04638at 18.031 kb on + strand, within MPMX19_04638at 18.031 kb on + strand, within MPMX19_04638at 18.031 kb on + strand, within MPMX19_04638at 18.032 kb on - strand, within MPMX19_04638at 18.032 kb on - strand, within MPMX19_04638at 18.044 kb on - strand, within MPMX19_04638

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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14,682 + MPMX19_04636 0.31 -1.4
14,682 + MPMX19_04636 0.31 +0.1
15,231 + MPMX19_04636 0.75 -0.7
15,232 - MPMX19_04636 0.75 +0.8
15,232 - MPMX19_04636 0.75 -1.4
15,255 + MPMX19_04636 0.76 -1.8
15,255 + MPMX19_04636 0.76 -0.8
15,256 - MPMX19_04636 0.77 -1.0
15,432 + +0.1
15,432 + +0.1
15,432 + -0.1
15,432 + +0.2
15,432 + -1.0
15,432 + +0.9
15,433 - -0.7
15,442 - -0.4
15,442 - -0.3
15,459 - +0.3
15,459 - -0.0
15,495 + -2.2
15,495 + +0.1
15,495 + +0.3
15,495 + -2.2
15,496 - -0.7
15,496 - -1.7
15,496 - +0.6
15,496 - +0.1
15,633 + +0.6
15,633 + -0.0
15,634 - -2.0
15,788 + MPMX19_04637 0.14 -0.6
15,788 + MPMX19_04637 0.14 -0.2
15,788 + MPMX19_04637 0.14 +1.1
15,788 + MPMX19_04637 0.14 +1.0
15,788 + MPMX19_04637 0.14 +0.1
15,788 + MPMX19_04637 0.14 -0.0
15,788 + MPMX19_04637 0.14 +0.7
15,788 + MPMX19_04637 0.14 -0.2
15,788 + MPMX19_04637 0.14 -0.8
15,788 + MPMX19_04637 0.14 -1.2
15,788 + MPMX19_04637 0.14 -0.1
15,789 - MPMX19_04637 0.14 +0.1
15,789 - MPMX19_04637 0.14 -0.0
15,789 - MPMX19_04637 0.14 +0.3
15,789 - MPMX19_04637 0.14 -0.1
15,789 - MPMX19_04637 0.14 +0.2
15,789 - MPMX19_04637 0.14 +0.3
16,106 - MPMX19_04637 0.33 +0.9
16,115 + MPMX19_04637 0.33 -0.4
16,115 + MPMX19_04637 0.33 +0.8
16,115 + MPMX19_04637 0.33 +0.6
16,116 - MPMX19_04637 0.33 +0.2
16,290 + MPMX19_04637 0.44 -1.2
16,328 + MPMX19_04637 0.46 -1.0
16,328 + MPMX19_04637 0.46 -0.0
16,328 + MPMX19_04637 0.46 -0.2
16,329 - MPMX19_04637 0.46 +0.6
16,595 + MPMX19_04637 0.61 +1.0
16,595 + MPMX19_04637 0.61 +0.3
16,595 + MPMX19_04637 0.61 +0.6
16,595 + MPMX19_04637 0.61 -0.8
16,595 + MPMX19_04637 0.61 -1.6
16,595 + MPMX19_04637 0.61 +0.6
16,595 + MPMX19_04637 0.61 +1.7
16,595 + MPMX19_04637 0.61 +0.6
16,595 + MPMX19_04637 0.61 -2.2
16,595 + MPMX19_04637 0.61 +0.3
16,596 - MPMX19_04637 0.62 -0.8
16,596 - MPMX19_04637 0.62 -0.8
16,596 - MPMX19_04637 0.62 -0.1
16,596 - MPMX19_04637 0.62 +1.1
16,609 - MPMX19_04637 0.62 -2.2
16,609 - MPMX19_04637 0.62 +0.6
16,640 + MPMX19_04637 0.64 +0.9
16,640 + MPMX19_04637 0.64 +0.8
16,640 + MPMX19_04637 0.64 -1.7
16,640 + MPMX19_04637 0.64 -1.8
16,640 + MPMX19_04637 0.64 +0.6
16,641 - MPMX19_04637 0.64 -0.3
16,641 - MPMX19_04637 0.64 +1.7
16,641 - MPMX19_04637 0.64 +1.0
16,641 - MPMX19_04637 0.64 -0.1
16,677 + MPMX19_04637 0.66 -0.7
16,677 + MPMX19_04637 0.66 -1.8
16,677 + MPMX19_04637 0.66 -0.2
16,678 - MPMX19_04637 0.66 -0.2
16,678 - MPMX19_04637 0.66 +0.1
16,678 - MPMX19_04637 0.66 -1.4
16,678 - MPMX19_04637 0.66 +0.1
16,678 - MPMX19_04637 0.66 +0.6
16,970 + MPMX19_04637 0.83 +0.1
17,341 + -0.5
17,341 + +0.1
17,341 + +0.2
17,341 + -1.4
17,342 - +0.4
17,342 - -0.2
17,342 - +0.5
17,590 + MPMX19_04638 0.27 -0.0
17,591 - MPMX19_04638 0.27 -1.0
18,031 + MPMX19_04638 0.64 -0.2
18,031 + MPMX19_04638 0.64 +0.0
18,031 + MPMX19_04638 0.64 -0.4
18,032 - MPMX19_04638 0.64 +1.3
18,032 - MPMX19_04638 0.64 -2.4
18,044 - MPMX19_04638 0.65 +0.6

Or see this region's nucleotide sequence