Strain Fitness in Azospirillum sp. SherDot2

Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03861

Experiment: NLN

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	NLN
				remove
106,670	+	MPMX19_03860	0.11	+0.1
106,670	+	MPMX19_03860	0.11	+0.2
106,671	-	MPMX19_03860	0.12	+0.5
106,671	-	MPMX19_03860	0.12	-0.0
106,671	-	MPMX19_03860	0.12	-0.1
106,671	-	MPMX19_03860	0.12	+0.6
106,693	+	MPMX19_03860	0.15	-0.4
106,693	+	MPMX19_03860	0.15	-0.5
106,693	+	MPMX19_03860	0.15	+1.1
106,693	+	MPMX19_03860	0.15	-0.4
106,730	+	MPMX19_03860	0.21	-0.5
106,736	+	MPMX19_03860	0.22	-0.3
106,736	+	MPMX19_03860	0.22	-0.4
106,736	+	MPMX19_03860	0.22	+0.1
106,737	-	MPMX19_03860	0.22	+2.6
106,737	-	MPMX19_03860	0.22	-0.4
106,737	-	MPMX19_03860	0.22	+0.1
106,769	+	MPMX19_03860	0.27	+1.6
106,769	+	MPMX19_03860	0.27	-0.4
106,769	+	MPMX19_03860	0.27	-0.1
106,769	+	MPMX19_03860	0.27	-1.4
106,769	+	MPMX19_03860	0.27	-1.7
106,769	+	MPMX19_03860	0.27	+1.6
106,769	+	MPMX19_03860	0.27	-0.1
106,769	+	MPMX19_03860	0.27	-0.1
106,769	+	MPMX19_03860	0.27	-0.6
106,769	+	MPMX19_03860	0.27	+0.6
106,769	+	MPMX19_03860	0.27	-0.4
106,770	-	MPMX19_03860	0.27	-1.4
106,770	-	MPMX19_03860	0.27	+0.8
106,770	-	MPMX19_03860	0.27	-1.8
106,770	-	MPMX19_03860	0.27	-1.1
106,770	-	MPMX19_03860	0.27	-1.1
106,770	-	MPMX19_03860	0.27	-0.0
106,770	-	MPMX19_03860	0.27	-0.1
106,770	-	MPMX19_03860	0.27	-0.7
106,770	-	MPMX19_03860	0.27	-0.6
106,770	-	MPMX19_03860	0.27	-0.2
106,770	-	MPMX19_03860	0.27	-0.9
106,770	-	MPMX19_03860	0.27	-0.2
106,770	-	MPMX19_03860	0.27	-0.4
106,770	-	MPMX19_03860	0.27	-0.4
106,770	-	MPMX19_03860	0.27	-0.5
106,770	-	MPMX19_03860	0.27	-0.9
106,770	-	MPMX19_03860	0.27	-0.7
106,770	-	MPMX19_03860	0.27	-0.5
106,770	-	MPMX19_03860	0.27	+0.5
106,770	-	MPMX19_03860	0.27	+0.2
106,770	-	MPMX19_03860	0.27	+0.5
106,770	-	MPMX19_03860	0.27	-0.0
106,845	+	MPMX19_03860	0.39	-1.0
106,845	+	MPMX19_03860	0.39	+1.3
106,845	+	MPMX19_03860	0.39	-0.7
106,845	+	MPMX19_03860	0.39	+0.1
106,868	+	MPMX19_03860	0.43	-1.8
106,869	-	MPMX19_03860	0.43	-0.5
106,881	+	MPMX19_03860	0.45	-0.2
106,881	+	MPMX19_03860	0.45	-1.9
106,881	+	MPMX19_03860	0.45	+0.3
106,881	+	MPMX19_03860	0.45	-1.9
106,881	+	MPMX19_03860	0.45	+0.1
106,881	+	MPMX19_03860	0.45	-0.4
106,881	+	MPMX19_03860	0.45	+1.1
106,882	-	MPMX19_03860	0.45	+1.1
106,882	-	MPMX19_03860	0.45	-1.2
106,882	-	MPMX19_03860	0.45	-0.8
106,882	-	MPMX19_03860	0.45	+1.2
106,882	-	MPMX19_03860	0.45	+0.2
106,882	-	MPMX19_03860	0.45	+0.3
106,882	-	MPMX19_03860	0.45	+1.2
106,882	-	MPMX19_03860	0.45	-1.5
106,883	-	MPMX19_03860	0.45	-0.4
106,962	-	MPMX19_03860	0.58	-0.4
107,004	+	MPMX19_03860	0.64	-0.8
107,004	+	MPMX19_03860	0.64	+0.1
107,004	+	MPMX19_03860	0.64	+1.6
107,004	+	MPMX19_03860	0.64	+2.1
107,004	+	MPMX19_03860	0.64	-0.6
107,005	-	MPMX19_03860	0.64	+0.7
107,034	+	MPMX19_03860	0.69	-0.6
107,034	+	MPMX19_03860	0.69	-1.8
107,035	-	MPMX19_03860	0.69	-1.8
107,127	+	MPMX19_03860	0.84	-1.0
107,127	+	MPMX19_03860	0.84	-1.4
107,127	+	MPMX19_03860	0.84	-1.9
107,127	+	MPMX19_03860	0.84	-2.2
107,127	+	MPMX19_03860	0.84	-0.9
107,127	+	MPMX19_03860	0.84	+0.4
107,127	+	MPMX19_03860	0.84	+2.0
107,127	+	MPMX19_03860	0.84	+0.6
107,127	+	MPMX19_03860	0.84	-0.7
107,127	+	MPMX19_03860	0.84	-0.4
107,128	-	MPMX19_03860	0.84	-1.1
107,128	-	MPMX19_03860	0.84	-0.4
107,128	-	MPMX19_03860	0.84	-1.1
107,128	-	MPMX19_03860	0.84	-0.2
107,128	-	MPMX19_03860	0.84	-0.3
107,128	-	MPMX19_03860	0.84	-0.0
107,128	-	MPMX19_03860	0.84	+1.9
107,128	-	MPMX19_03860	0.84	+0.8
107,128	-	MPMX19_03860	0.84	+0.6
107,129	+	MPMX19_03860	0.84	+1.5
107,129	+	MPMX19_03860	0.84	+0.8
107,129	+	MPMX19_03860	0.84	-0.9
107,129	+	MPMX19_03860	0.84	-0.5
107,130	-	MPMX19_03860	0.84	+0.5
107,130	-	MPMX19_03860	0.84	-0.1
107,130	-	MPMX19_03860	0.84	-0.4
107,207	+			-0.1
107,208	-			+0.8
107,326	+			+0.6
107,327	-			-0.2
107,327	-			-0.2
107,327	-			+0.6
107,327	-			+0.4
107,327	-			-1.4
107,561	+			+0.2
107,562	-			-0.9
107,562	-			+1.0
107,562	-			-0.1
107,562	-			-2.4
107,562	-			-0.4
107,574	+			-0.5
107,574	+			+0.3
107,574	+			+1.1
107,574	+			-0.4
107,575	-			-1.9
107,575	-			-0.4
107,575	-			-0.4
107,575	-			+1.1
107,700	+			-0.1
107,700	+			+0.3
107,700	+			-1.5
107,700	+			-0.7
107,700	+			-0.8
107,701	-			+0.2
107,701	-			-0.4
107,701	-			-0.4
107,701	-			-0.0
107,703	+			+0.4
107,703	+			-0.8
107,703	+			-1.2
107,703	+			-0.6
107,703	+			-1.1
107,703	+			+0.1
107,703	+			-0.2
107,703	+			-1.6
107,703	+			+1.6
107,704	-			-0.9
107,704	-			+0.2
107,704	-			+0.6
107,704	-			+1.2
107,704	-			-0.4
107,704	-			+0.4
107,704	-			-2.2
107,704	-			+0.3
107,704	-			-0.0
107,704	-			-0.7
107,704	-			-1.5
107,704	-			+0.0
107,704	-			+0.1
107,705	-			-0.1
107,712	+			-0.0
107,772	+	MPMX19_03861	0.16	+1.4
107,772	+	MPMX19_03861	0.16	+0.3
107,772	+	MPMX19_03861	0.16	+0.1
107,772	+	MPMX19_03861	0.16	-1.4
107,772	+	MPMX19_03861	0.16	+0.3
107,772	+	MPMX19_03861	0.16	-0.1
107,772	+	MPMX19_03861	0.16	-0.9
107,772	+	MPMX19_03861	0.16	-0.2
107,772	+	MPMX19_03861	0.16	+0.4
107,772	+	MPMX19_03861	0.16	+0.5
107,772	+	MPMX19_03861	0.16	+0.6
107,772	+	MPMX19_03861	0.16	-0.8
107,773	-	MPMX19_03861	0.16	-0.7
107,773	-	MPMX19_03861	0.16	-0.9
107,773	-	MPMX19_03861	0.16	+0.3
107,773	-	MPMX19_03861	0.16	+0.4
107,773	-	MPMX19_03861	0.16	+0.6
107,773	-	MPMX19_03861	0.16	-0.6
107,773	-	MPMX19_03861	0.16	-0.5
107,773	-	MPMX19_03861	0.16	-0.6
107,773	-	MPMX19_03861	0.16	-0.0
107,773	-	MPMX19_03861	0.16	-0.4
107,773	-	MPMX19_03861	0.16	+0.1
107,799	+	MPMX19_03861	0.19	+0.1
107,799	+	MPMX19_03861	0.19	+0.3
107,799	+	MPMX19_03861	0.19	-0.1
107,799	+	MPMX19_03861	0.19	+0.6
107,799	+	MPMX19_03861	0.19	-0.7
107,799	+	MPMX19_03861	0.19	-0.6
107,799	+	MPMX19_03861	0.19	-0.1
107,799	+	MPMX19_03861	0.19	-1.5
107,799	+	MPMX19_03861	0.19	+1.3
107,800	-	MPMX19_03861	0.19	+0.9
107,800	-	MPMX19_03861	0.19	+0.3
107,800	-	MPMX19_03861	0.19	+0.5
107,800	-	MPMX19_03861	0.19	+0.5
107,800	-	MPMX19_03861	0.19	+0.4
107,800	-	MPMX19_03861	0.19	-1.2
107,800	-	MPMX19_03861	0.19	-0.5
107,800	-	MPMX19_03861	0.19	-0.7
107,800	-	MPMX19_03861	0.19	-1.7
107,800	-	MPMX19_03861	0.19	-1.4
107,800	-	MPMX19_03861	0.19	+0.2
107,800	-	MPMX19_03861	0.19	+0.3
107,916	+	MPMX19_03861	0.32	+1.0
107,916	+	MPMX19_03861	0.32	+1.1
107,916	+	MPMX19_03861	0.32	-2.4
107,917	-	MPMX19_03861	0.32	-1.3
108,006	+	MPMX19_03861	0.42	+0.3
108,006	+	MPMX19_03861	0.42	+0.4
108,006	+	MPMX19_03861	0.42	-0.5
108,006	+	MPMX19_03861	0.42	+0.6
108,007	-	MPMX19_03861	0.42	-1.7
108,052	+	MPMX19_03861	0.47	+0.1
108,052	+	MPMX19_03861	0.47	-0.2
108,136	-	MPMX19_03861	0.56	-0.4
108,136	-	MPMX19_03861	0.56	+0.2
108,168	+	MPMX19_03861	0.60	-0.4
108,169	-	MPMX19_03861	0.60	-0.4
108,219	+	MPMX19_03861	0.66	+0.2
108,219	+	MPMX19_03861	0.66	-1.9
108,219	+	MPMX19_03861	0.66	+0.6
108,219	+	MPMX19_03861	0.66	-1.1
108,219	+	MPMX19_03861	0.66	+0.3
108,219	+	MPMX19_03861	0.66	+0.6
108,219	+	MPMX19_03861	0.66	-1.7
108,219	+	MPMX19_03861	0.66	-0.6
108,220	-	MPMX19_03861	0.66	-0.6
108,220	-	MPMX19_03861	0.66	+0.1
108,220	-	MPMX19_03861	0.66	-0.0
108,220	-	MPMX19_03861	0.66	+0.4
108,220	-	MPMX19_03861	0.66	+0.4
108,292	+	MPMX19_03861	0.74	+0.9
108,293	+	MPMX19_03861	0.74	-0.4
108,293	+	MPMX19_03861	0.74	+1.4
108,293	+	MPMX19_03861	0.74	+1.3
108,293	+	MPMX19_03861	0.74	-0.9
108,293	+	MPMX19_03861	0.74	+0.8
108,293	+	MPMX19_03861	0.74	+0.9
108,294	-	MPMX19_03861	0.74	+0.4
108,294	-	MPMX19_03861	0.74	+0.7
108,294	-	MPMX19_03861	0.74	-0.4
108,294	-	MPMX19_03861	0.74	+0.9
108,294	-	MPMX19_03861	0.74	-1.7
108,294	-	MPMX19_03861	0.74	-0.7
108,545	-			-1.7
108,567	+			-0.4
108,567	+			+1.6
108,590	+			-1.4
108,590	+			-0.4
108,590	+			-0.9
108,590	+			-1.2
108,590	+			-1.4
108,590	+			+1.5
108,590	+			-0.4
108,590	+			-0.6
108,590	+			+1.1
108,590	+			+1.2
108,591	-			-0.0
108,591	-			+0.2
108,591	-			+0.6
108,591	-			-0.4
108,591	-			-0.4
108,591	-			-0.4
108,591	-			-1.2
108,591	-			+0.6
108,591	-			-1.2
108,592	+			+0.1
108,592	+			+0.2
108,593	-			-0.4
108,638	-			+0.6
108,790	+			+0.6
108,790	+			-0.0
108,790	+			-1.9
108,790	+			+0.4
108,790	+			-0.6
108,790	+			-0.4
108,790	+			+0.2
108,790	+			-0.9
108,791	-			-0.3
108,791	-			+1.4
108,791	-			-0.8
108,791	-			-0.2
108,791	-			-1.2
108,791	-			-1.2
108,791	-			-0.9
108,791	-			+0.6
108,791	-			+0.2
108,791	-			+0.3
108,791	-			-1.7
108,791	-			-1.7
108,791	-			+0.3
108,995	+			-0.9
108,995	+			+0.1
108,995	+			-0.3
108,996	-			-0.1
109,008	-			-0.7
109,124	+	MPMX19_03862	0.35	+0.4
109,125	-	MPMX19_03862	0.36	-0.4
109,142	+	MPMX19_03862	0.41	+0.2
109,142	+	MPMX19_03862	0.41	-0.5
109,142	+	MPMX19_03862	0.41	+0.1
109,143	-	MPMX19_03862	0.41	-1.7
109,143	-	MPMX19_03862	0.41	-0.9
109,148	+	MPMX19_03862	0.42	+1.6
109,148	+	MPMX19_03862	0.42	+0.3
109,148	+	MPMX19_03862	0.42	-0.0
109,149	-	MPMX19_03862	0.43	-0.1
109,149	-	MPMX19_03862	0.43	-1.8
109,149	-	MPMX19_03862	0.43	-0.5
109,149	-	MPMX19_03862	0.43	+0.1
109,149	-	MPMX19_03862	0.43	-0.4
109,149	-	MPMX19_03862	0.43	-1.4
109,149	-	MPMX19_03862	0.43	-1.1
109,149	-	MPMX19_03862	0.43	-0.6
109,149	-	MPMX19_03862	0.43	+0.6
109,346	+			+0.8
109,346	+			-0.9
109,346	+			-0.8
109,346	+			+0.2
109,346	+			-0.8
109,346	+			-0.2
109,346	+			+0.6
109,346	+			-0.3
109,346	+			-0.7
109,347	-			+1.0
109,347	-			+0.3
109,347	-			+0.6
109,465	+			+1.1
109,465	+			-0.7
109,465	+			+0.1
109,465	+			-1.1
109,465	+			-0.3
109,466	-			-0.5
109,466	-			-0.1
109,466	-			+0.6
109,466	-			-2.8

Or see this region's nucleotide sequence